Wall clock time and date at job start Tue Mar 31 2020 23:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 119.99859 * 2 1 4 4 C 1.52998 * 109.47235 * 269.99863 * 3 2 1 5 5 C 1.52998 * 109.47249 * 300.00072 * 4 3 2 6 6 C 1.53003 * 109.47193 * 60.00351 * 4 3 2 7 7 C 1.53004 * 109.46786 * 180.02562 * 4 3 2 8 8 N 1.46906 * 109.46870 * 180.02562 * 7 4 3 9 9 C 1.46894 * 111.00096 * 179.97438 * 8 7 4 10 10 C 1.50700 * 109.47516 * 180.02562 * 9 8 7 11 11 O 1.21298 * 119.99519 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00340 * 179.97438 * 10 9 8 13 13 C 1.37100 * 119.99832 * 179.97438 * 12 10 9 14 14 H 1.07994 * 120.00366 * 0.02562 * 13 12 10 15 15 C 1.38949 * 119.99634 * 179.97438 * 13 12 10 16 16 N 1.31408 * 120.00317 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00081 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46585 * 60.00005 * 17 15 13 19 19 H 1.48491 * 109.47359 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46894 * 300.00498 * 17 15 13 21 21 C 1.34778 * 120.00141 * 180.02562 * 2 1 3 22 22 O 1.21278 * 119.99842 * 180.02562 * 21 2 1 23 23 C 1.50703 * 119.99651 * 359.97438 * 21 2 1 24 24 C 1.53003 * 109.46728 * 180.02562 * 23 21 2 25 25 C 1.53786 * 113.61503 * 85.86370 * 24 23 21 26 26 C 1.54049 * 86.98426 * 140.01654 * 25 24 23 27 27 C 1.53781 * 113.61337 * 183.47164 * 24 23 21 28 28 H 1.08994 * 109.47149 * 269.99713 * 1 2 3 29 29 H 1.09000 * 109.46954 * 30.00192 * 1 2 3 30 30 H 1.09009 * 109.46848 * 149.99700 * 1 2 3 31 31 H 1.09004 * 109.47297 * 30.00435 * 3 2 1 32 32 H 1.08998 * 109.47083 * 149.99660 * 3 2 1 33 33 H 1.08999 * 109.47371 * 59.99887 * 5 4 3 34 34 H 1.08998 * 109.47055 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.47142 * 299.99645 * 5 4 3 36 36 H 1.09004 * 109.46819 * 59.99747 * 6 4 3 37 37 H 1.08998 * 109.46951 * 179.97438 * 6 4 3 38 38 H 1.08999 * 109.46642 * 299.99632 * 6 4 3 39 39 H 1.09000 * 109.47066 * 299.99931 * 7 4 3 40 40 H 1.08994 * 109.47435 * 60.00594 * 7 4 3 41 41 H 1.00902 * 110.99663 * 56.04405 * 8 7 4 42 42 H 1.09004 * 109.47531 * 300.00541 * 9 8 7 43 43 H 1.08999 * 109.47176 * 59.99929 * 9 8 7 44 44 H 0.96997 * 120.00110 * 0.02562 * 12 10 9 45 45 H 0.97000 * 120.00513 * 179.97438 * 16 15 13 46 46 H 1.09000 * 109.47223 * 60.00290 * 23 21 2 47 47 H 1.08997 * 109.47305 * 299.99950 * 23 21 2 48 48 H 1.09002 * 112.85017 * 314.66753 * 24 23 21 49 49 H 1.08992 * 113.61675 * 254.61398 * 25 24 23 50 50 H 1.09000 * 113.60973 * 25.51686 * 25 24 23 51 51 H 1.09005 * 113.62125 * 220.02158 * 26 25 24 52 52 H 1.09003 * 113.61268 * 89.11946 * 26 25 24 53 53 H 1.08999 * 113.61567 * 334.48261 * 27 24 23 54 54 H 1.09000 * 113.61379 * 105.30384 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2794 0.6442 -2.1637 6 6 1.1156 1.8934 -2.1638 7 6 3.2180 3.0352 -1.4424 8 7 3.4624 3.4596 -2.8274 9 6 4.1966 4.7313 -2.8665 10 6 4.4277 5.1341 -4.3002 11 8 4.0203 4.4310 -5.2008 12 7 5.0860 6.2759 -4.5817 13 6 5.2966 6.6420 -5.8860 14 1 4.9347 6.0156 -6.6879 15 6 5.9749 7.8194 -6.1762 16 7 6.4149 8.5819 -5.2005 17 14 6.2613 8.3187 -7.9534 18 1 4.9540 8.4793 -8.6391 19 1 7.0030 9.6046 -7.9929 20 1 7.0551 7.2686 -8.6407 21 6 2.1389 -1.1672 -0.0005 22 8 3.3517 -1.1671 -0.0001 23 6 1.3854 -2.4723 -0.0005 24 6 2.3797 -3.6352 -0.0005 25 6 2.8573 -4.0374 1.4049 26 6 2.7587 -5.4999 0.9312 27 6 1.7110 -5.0174 -0.0858 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0284 0.5139 32 1 3.1498 1.1384 0.5139 33 1 2.7345 -0.2998 -2.1638 34 1 3.4614 0.9591 -3.1912 35 1 4.2318 0.5139 -1.6499 36 1 0.5266 2.6531 -1.6499 37 1 1.2973 2.2085 -3.1913 38 1 0.5707 0.9494 -2.1638 39 1 2.6293 3.7950 -0.9284 40 1 4.1704 2.9044 -0.9287 41 1 2.5977 3.5255 -3.3432 42 1 3.6145 5.5026 -2.3621 43 1 5.1559 4.6126 -2.3630 44 1 5.4114 6.8383 -3.8615 45 1 6.8887 9.4037 -5.4031 46 1 0.7584 -2.5298 -0.8903 47 1 0.7591 -2.5302 0.8897 48 1 3.1914 -3.4980 -0.7149 49 1 3.8747 -3.7170 1.6286 50 1 2.1498 -3.7858 2.1950 51 1 2.3563 -6.1769 1.6848 52 1 3.6741 -5.8726 0.4715 53 1 0.6907 -5.0333 0.2975 54 1 1.8025 -5.4870 -1.0652 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725140560.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:03 Heat of formation + Delta-G solvation = -81.654701 kcal Electronic energy + Delta-G solvation = -29961.277170 eV Core-core repulsion = 25932.492760 eV Total energy + Delta-G solvation = -4028.784410 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.38802 -40.21643 -39.56585 -38.43182 -36.44877 -35.89478 -34.34654 -33.24608 -31.45130 -28.93393 -28.81578 -28.02546 -26.86259 -26.51842 -26.39910 -24.86522 -23.69974 -21.15768 -20.48854 -20.16083 -19.95101 -19.53173 -17.90615 -17.78874 -17.28648 -17.11395 -16.84298 -16.46845 -16.28116 -15.89338 -15.51512 -15.42643 -15.23559 -14.98350 -14.64776 -14.37289 -14.18576 -14.08531 -13.79602 -13.65228 -13.44776 -13.33602 -13.26765 -13.17454 -12.94972 -12.80893 -12.68983 -12.49803 -12.44328 -12.41926 -12.26944 -12.13128 -11.93001 -11.66993 -11.58794 -11.51070 -11.44017 -11.19195 -11.04067 -10.59021 -10.34980 -10.02651 -9.50512 -9.26366 -8.47206 -5.96313 1.39098 1.40831 1.52017 1.77044 2.04301 2.13284 2.29014 2.96236 3.19797 3.53013 3.58248 3.76808 3.81599 3.83829 3.90532 3.98758 4.00480 4.08477 4.32074 4.37866 4.42289 4.45802 4.48777 4.52753 4.55885 4.60520 4.65919 4.72628 4.75084 4.83986 4.87270 4.87979 4.89220 4.92180 4.99897 5.04195 5.10560 5.11199 5.12119 5.19088 5.20304 5.39660 5.41529 5.47816 5.49569 5.63550 5.66287 5.89657 6.11890 6.44569 6.52020 6.59422 7.11481 7.34000 7.55122 8.10603 8.69911 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024971 B = 0.001732 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.011983 B =16161.942662 C =16543.540031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.612 5.612 3 C 0.130 3.870 4 C -0.068 4.068 5 C -0.107 4.107 6 C -0.142 4.142 7 C 0.073 3.927 8 N -0.681 5.681 9 C 0.065 3.935 10 C 0.437 3.563 11 O -0.624 6.624 12 N -0.573 5.573 13 C -0.337 4.337 14 H 0.078 0.922 15 C -0.012 4.012 16 N -0.920 5.920 17 Si 0.994 3.006 18 H -0.270 1.270 19 H -0.269 1.269 20 H -0.274 1.274 21 C 0.503 3.497 22 O -0.576 6.576 23 C -0.123 4.123 24 C -0.103 4.103 25 C -0.137 4.137 26 C -0.143 4.143 27 C -0.127 4.127 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.032 0.968 36 H 0.071 0.929 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.345 0.655 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.111 0.889 47 H 0.116 0.884 48 H 0.068 0.932 49 H 0.044 0.956 50 H 0.090 0.910 51 H 0.079 0.921 52 H 0.071 0.929 53 H 0.101 0.899 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.753 -21.215 18.342 32.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.344 5.344 3 C 0.006 3.994 4 C -0.070 4.070 5 C -0.164 4.164 6 C -0.199 4.199 7 C -0.056 4.056 8 N -0.314 5.314 9 C -0.067 4.067 10 C 0.225 3.775 11 O -0.510 6.510 12 N -0.210 5.210 13 C -0.466 4.466 14 H 0.096 0.904 15 C -0.212 4.212 16 N -0.560 5.560 17 Si 0.817 3.183 18 H -0.196 1.196 19 H -0.194 1.194 20 H -0.199 1.199 21 C 0.293 3.707 22 O -0.456 6.456 23 C -0.162 4.162 24 C -0.121 4.121 25 C -0.174 4.174 26 C -0.180 4.180 27 C -0.164 4.164 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.165 0.835 42 H 0.086 0.914 43 H 0.116 0.884 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.129 0.871 47 H 0.135 0.865 48 H 0.086 0.914 49 H 0.063 0.937 50 H 0.108 0.892 51 H 0.097 0.903 52 H 0.090 0.910 53 H 0.119 0.881 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.740 -21.868 17.691 32.232 hybrid contribution 0.320 1.467 -0.480 1.576 sum -15.420 -20.401 17.211 30.825 Atomic orbital electron populations 1.22215 0.77313 1.04867 1.03331 1.47897 1.08232 1.05227 1.73082 1.21383 0.97633 0.85567 0.94808 1.20876 0.95818 0.94161 0.96120 1.21507 0.98512 0.96954 0.99453 1.21965 0.95631 1.02505 0.99802 1.21968 0.99766 0.95591 0.88310 1.60052 1.27448 1.29783 1.14157 1.21517 1.00885 0.91962 0.92360 1.20887 0.82474 0.82104 0.92053 1.90485 1.56211 1.54596 1.49721 1.41923 1.50308 1.20631 1.08126 1.19641 1.35739 1.06453 0.84775 0.90369 1.26050 0.95903 0.95395 1.03883 1.69665 1.38283 1.14467 1.33621 0.84978 0.78577 0.77681 0.77023 1.19557 1.19356 1.19913 1.21289 0.87914 0.86577 0.74961 1.90706 1.16069 1.87903 1.50892 1.21762 0.98735 0.89827 1.05877 1.22300 0.97820 0.93843 0.98185 1.23005 1.00935 0.96762 0.96743 1.22848 0.99574 0.96175 0.99420 1.22951 0.99296 0.94394 0.99743 0.90877 0.89710 0.89379 0.88076 0.91860 0.94137 0.94230 0.94872 0.90995 0.93946 0.91065 0.93175 0.91475 0.83507 0.91357 0.88363 0.76973 0.91267 0.87132 0.86545 0.91403 0.93713 0.89189 0.90255 0.91016 0.88074 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.43 9.15 127.77 1.17 1.60 16 2 N -0.61 -9.20 2.40 -846.75 -2.03 -11.23 16 3 C 0.13 2.30 4.60 86.38 0.40 2.70 16 4 C -0.07 -1.49 0.67 -52.18 -0.03 -1.52 16 5 C -0.11 -3.09 6.98 71.98 0.50 -2.59 16 6 C -0.14 -2.64 6.90 71.98 0.50 -2.15 16 7 C 0.07 1.79 4.65 86.30 0.40 2.19 16 8 N -0.68 -22.50 5.34 -517.93 -2.76 -25.27 16 9 C 0.07 2.33 6.17 85.56 0.53 2.86 16 10 C 0.44 21.53 7.82 87.66 0.69 22.21 16 11 O -0.62 -35.66 15.78 -3.09 -0.05 -35.71 16 12 N -0.57 -30.19 5.29 -306.98 -1.62 -31.82 16 13 C -0.34 -19.55 9.68 84.04 0.81 -18.74 16 14 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 15 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 16 N -0.92 -50.32 13.05 21.66 0.28 -50.03 16 17 Si 0.99 43.62 29.55 68.60 2.03 45.65 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 19 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 C 0.50 9.77 6.08 87.66 0.53 10.30 16 22 O -0.58 -16.69 13.56 -3.02 -0.04 -16.73 16 23 C -0.12 -1.45 4.08 29.85 0.12 -1.33 16 24 C -0.10 -1.58 3.11 -10.26 -0.03 -1.61 16 25 C -0.14 -2.07 7.65 31.21 0.24 -1.83 16 26 C -0.14 -1.73 8.09 31.21 0.25 -1.48 16 27 C -0.13 -1.32 7.64 31.12 0.24 -1.08 16 28 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.08 0.50 6.05 -2.39 -0.01 0.48 16 30 H 0.09 0.31 6.44 -2.38 -0.02 0.30 16 31 H 0.10 1.25 8.07 -2.38 -0.02 1.23 16 32 H 0.06 1.42 7.42 -2.39 -0.02 1.41 16 33 H 0.04 1.13 6.15 -2.39 -0.01 1.11 16 34 H 0.04 1.34 7.60 -2.39 -0.02 1.32 16 35 H 0.03 1.09 7.73 -2.39 -0.02 1.07 16 36 H 0.07 1.04 8.08 -2.38 -0.02 1.02 16 37 H 0.04 1.01 6.57 -2.39 -0.02 0.99 16 38 H 0.07 1.12 5.99 -2.39 -0.01 1.10 16 39 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.34 11.77 6.47 -89.69 -0.58 11.19 16 42 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.10 3.28 8.14 -2.39 -0.02 3.27 16 44 H 0.40 19.80 7.90 -92.71 -0.73 19.07 16 45 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 46 H 0.11 0.91 7.40 -2.39 -0.02 0.90 16 47 H 0.12 0.79 7.84 -2.39 -0.02 0.77 16 48 H 0.07 1.48 7.73 -2.39 -0.02 1.46 16 49 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.09 1.08 7.92 -2.39 -0.02 1.06 16 51 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 52 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 53 H 0.10 0.65 8.10 -2.39 -0.02 0.63 16 54 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -75.62 417.24 2.16 -73.46 By element: Atomic # 1 Polarization: 42.77 SS G_CDS: -0.42 Total: 42.35 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 6.78 Total: 9.33 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -6.14 Total: -118.35 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -0.09 Total: -52.44 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -75.62 2.16 -73.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725140560.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.193 kcal (2) G-P(sol) polarization free energy of solvation -75.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds