Wall clock time and date at job start Tue Mar 31 2020 23:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47234 * 2 1 4 4 C 1.53002 * 109.46899 * 120.00730 * 2 1 3 5 5 N 1.46897 * 109.47291 * 175.52457 * 4 2 1 6 6 C 1.48559 * 110.99981 * 288.27657 * 5 4 2 7 7 C 1.54379 * 104.59308 * 200.95611 * 6 5 4 8 8 C 1.54256 * 105.06010 * 23.85523 * 7 6 5 9 9 C 1.48561 * 110.99862 * 172.85625 * 5 4 2 10 10 H 1.08992 * 110.51287 * 40.21394 * 9 5 4 11 11 C 1.50703 * 110.41129 * 277.81533 * 9 5 4 12 12 O 1.21277 * 120.00320 * 3.37832 * 11 9 5 13 13 N 1.34774 * 119.99795 * 183.37387 * 11 9 5 14 14 C 1.46498 * 120.00046 * 174.95543 * 13 11 9 15 15 C 1.53006 * 113.41242 * 307.64536 * 14 13 11 16 16 C 1.53005 * 109.46828 * 292.24397 * 15 14 13 17 17 O 1.42898 * 109.46623 * 184.40339 * 16 15 14 18 18 C 1.53502 * 114.20867 * 174.44671 * 14 13 11 19 19 N 1.47061 * 87.98294 * 220.33967 * 18 14 13 20 20 C 1.36939 * 136.05571 * 207.07925 * 19 18 14 21 21 H 1.08004 * 120.00003 * 0.02562 * 20 19 18 22 22 C 1.38810 * 120.00067 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00022 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00257 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47555 * 180.02562 * 24 22 20 26 26 H 1.48508 * 109.47324 * 300.00089 * 24 22 20 27 27 H 1.48498 * 109.47092 * 60.00115 * 24 22 20 28 28 C 1.47064 * 87.88479 * 27.34403 * 19 18 14 29 29 H 1.09004 * 109.46707 * 64.88781 * 1 2 3 30 30 H 1.09001 * 109.47276 * 184.88025 * 1 2 3 31 31 H 1.08991 * 109.46924 * 304.89173 * 1 2 3 32 32 H 1.09002 * 109.46966 * 239.99877 * 2 1 3 33 33 H 1.09003 * 109.46924 * 179.97438 * 3 2 1 34 34 H 1.08990 * 109.47271 * 299.99848 * 3 2 1 35 35 H 1.09003 * 109.46763 * 60.00268 * 3 2 1 36 36 H 1.08997 * 109.47668 * 55.51726 * 4 2 1 37 37 H 1.09007 * 109.46259 * 295.52267 * 4 2 1 38 38 H 1.09003 * 110.41086 * 82.17967 * 6 5 4 39 39 H 1.08993 * 110.40811 * 319.73825 * 6 5 4 40 40 H 1.09000 * 110.32681 * 264.95766 * 7 6 5 41 41 H 1.09005 * 110.40768 * 142.78954 * 7 6 5 42 42 H 1.09000 * 110.32317 * 241.09976 * 8 7 6 43 43 H 1.09005 * 110.41287 * 118.93930 * 8 7 6 44 44 H 0.97000 * 120.00476 * 354.95171 * 13 11 9 45 45 H 1.08998 * 109.46955 * 52.23940 * 15 14 13 46 46 H 1.08997 * 109.47060 * 172.24341 * 15 14 13 47 47 H 1.09001 * 109.47251 * 304.40004 * 16 15 14 48 48 H 1.08999 * 109.47294 * 64.40068 * 16 15 14 49 49 H 0.96707 * 113.99800 * 180.02562 * 17 16 15 50 50 H 1.09007 * 113.46391 * 105.56014 * 18 14 13 51 51 H 1.09002 * 113.51778 * 335.13541 * 18 14 13 52 52 H 0.96995 * 120.00321 * 180.02562 * 23 22 20 53 53 H 1.08996 * 113.47056 * 87.44042 * 28 19 18 54 54 H 1.09007 * 113.46170 * 217.87545 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5050 -0.8158 1.1964 6 6 3.9386 -1.7964 0.1682 7 6 5.3743 -2.1847 0.5820 8 6 5.4475 -1.8949 2.0954 9 6 4.0498 -1.3558 2.4687 10 1 3.4188 -2.1620 2.8426 11 6 4.1664 -0.2607 3.4973 12 8 3.7758 0.8581 3.2391 13 7 4.7047 -0.5245 4.7044 14 6 4.9199 0.5615 5.6637 15 6 5.7033 1.7401 5.0822 16 6 7.1420 1.3049 4.7965 17 8 7.9004 2.4307 4.3501 18 6 5.4129 0.0964 7.0410 19 7 4.5141 1.0933 7.6418 20 6 4.4821 1.8195 8.8023 21 1 5.2707 1.7071 9.5316 22 6 3.4360 2.7000 9.0415 23 7 2.4745 2.8365 8.1529 24 14 3.3918 3.6900 10.6248 25 1 2.1806 4.5490 10.6380 26 1 3.3548 2.7652 11.7862 27 1 4.6047 4.5426 10.7095 28 6 3.6613 0.9621 6.4508 29 1 -0.3633 0.4362 -0.9306 30 1 -0.3634 -1.0239 0.0874 31 1 -0.3633 0.5878 0.8429 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 1.6126 -1.7233 1.2902 37 1 1.7435 -0.1633 2.1374 38 1 3.9392 -1.3360 -0.8198 39 1 3.2895 -2.6719 0.1803 40 1 6.1011 -1.5757 0.0444 41 1 5.5521 -3.2429 0.3903 42 1 6.2102 -1.1437 2.3005 43 1 5.6602 -2.8101 2.6479 44 1 4.9497 -1.4335 4.9380 45 1 5.2320 2.0678 4.1555 46 1 5.7077 2.5621 5.7980 47 1 7.5880 0.9042 5.7068 48 1 7.1425 0.5367 4.0232 49 1 8.8245 2.2279 4.1495 50 1 6.4689 0.3024 7.2163 51 1 5.1397 -0.9323 7.2762 52 1 1.7437 3.4521 8.3198 53 1 2.9256 0.1617 6.5297 54 1 3.2249 1.9058 6.1235 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725200546.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:36 Heat of formation + Delta-G solvation = -53.605793 kcal Electronic energy + Delta-G solvation = -31980.459987 eV Core-core repulsion = 27952.891868 eV Total energy + Delta-G solvation = -4027.568118 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.67733 -40.38227 -38.64845 -37.69724 -36.55920 -35.21288 -33.83316 -32.08624 -31.96839 -30.20979 -28.98456 -27.95953 -26.66834 -26.35069 -25.24764 -23.67909 -23.18197 -22.21044 -20.94435 -20.54317 -20.13266 -18.77016 -18.43570 -18.16382 -17.37820 -17.02661 -16.81346 -16.31456 -15.91262 -15.80307 -15.61774 -15.30029 -15.25033 -14.98511 -14.54768 -14.46323 -14.37093 -13.97085 -13.73506 -13.59919 -13.22641 -13.16668 -13.10444 -12.97209 -12.78449 -12.73368 -12.68037 -12.61182 -12.37919 -12.32410 -12.07803 -12.06689 -11.81691 -11.76542 -11.61084 -11.43910 -11.41156 -11.23818 -10.94127 -10.87855 -10.34926 -9.92754 -9.33531 -8.98517 -7.92555 -5.28963 1.42783 1.47763 1.53682 1.80687 2.08302 2.47639 3.07649 3.14900 3.30597 3.38134 3.62538 3.65278 3.75688 3.93225 4.02278 4.09213 4.17060 4.20006 4.28317 4.30808 4.33563 4.38044 4.47582 4.56157 4.59490 4.63862 4.72065 4.74089 4.77564 4.82777 4.84573 4.92102 4.97794 5.05594 5.06260 5.07402 5.11531 5.17133 5.20668 5.23555 5.25851 5.30415 5.33379 5.45713 5.47592 5.54593 5.77789 5.86937 5.91115 6.12312 6.78053 6.84144 6.95992 7.50355 7.56392 8.53800 9.24177 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012002 B = 0.003349 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.309022 B = 8358.373607 C = 9563.513497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C -0.129 4.129 4 C 0.055 3.945 5 N -0.505 5.505 6 C 0.031 3.969 7 C -0.116 4.116 8 C -0.108 4.108 9 C 0.047 3.953 10 H 0.091 0.909 11 C 0.515 3.485 12 O -0.556 6.556 13 N -0.702 5.702 14 C 0.156 3.844 15 C -0.090 4.090 16 C 0.097 3.903 17 O -0.595 6.595 18 C 0.127 3.873 19 N -0.630 5.630 20 C -0.229 4.229 21 H 0.095 0.905 22 C -0.069 4.069 23 N -0.955 5.955 24 Si 0.983 3.017 25 H -0.298 1.298 26 H -0.271 1.271 27 H -0.274 1.274 28 C 0.156 3.844 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.024 0.976 36 H 0.047 0.953 37 H 0.043 0.957 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.064 0.936 43 H 0.107 0.893 44 H 0.415 0.585 45 H 0.061 0.939 46 H 0.042 0.958 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.397 0.603 50 H 0.068 0.932 51 H 0.065 0.935 52 H 0.247 0.753 53 H 0.012 0.988 54 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.360 -16.971 -18.355 26.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.100 4.100 3 C -0.186 4.186 4 C -0.073 4.073 5 N -0.229 5.229 6 C -0.096 4.096 7 C -0.154 4.154 8 C -0.146 4.146 9 C -0.065 4.065 10 H 0.108 0.892 11 C 0.302 3.698 12 O -0.432 6.432 13 N -0.357 5.357 14 C 0.068 3.932 15 C -0.129 4.129 16 C 0.019 3.981 17 O -0.404 6.404 18 C 0.001 3.999 19 N -0.357 5.357 20 C -0.357 4.357 21 H 0.112 0.888 22 C -0.262 4.262 23 N -0.604 5.604 24 Si 0.810 3.190 25 H -0.225 1.225 26 H -0.196 1.196 27 H -0.200 1.200 28 C 0.029 3.971 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.083 0.917 43 H 0.126 0.874 44 H 0.252 0.748 45 H 0.079 0.921 46 H 0.061 0.939 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.246 0.754 50 H 0.086 0.914 51 H 0.083 0.917 52 H 0.055 0.945 53 H 0.029 0.971 54 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 6.601 -15.093 -18.325 24.641 hybrid contribution -0.661 -0.232 1.434 1.596 sum 5.940 -15.325 -16.891 23.568 Atomic orbital electron populations 1.21814 0.94500 1.02085 1.01881 1.21005 0.95580 0.96065 0.97301 1.21598 1.01118 0.96006 0.99903 1.22291 0.87450 0.98866 0.98717 1.64991 1.10262 1.44927 1.02751 1.23239 0.96532 0.93706 0.96094 1.22283 0.95891 1.02760 0.94471 1.22305 0.92717 1.01892 0.97710 1.22647 0.99933 0.93438 0.90510 0.89189 1.20994 0.76380 0.89963 0.82493 1.90705 1.47735 1.25444 1.79317 1.45724 1.64506 1.10927 1.14520 1.21854 0.96427 0.87971 0.86946 1.21127 0.94838 0.96402 1.00560 1.21978 0.90065 0.87612 0.98422 1.86483 1.27729 1.36902 1.89285 1.22824 0.95706 0.93617 0.87739 1.45524 1.25614 1.45288 1.19231 1.19314 1.06473 1.15514 0.94357 0.88765 1.25745 0.96883 1.01602 1.01980 1.70085 1.13160 1.40285 1.36840 0.85095 0.76769 0.78256 0.78885 1.22450 1.19623 1.19986 1.22331 0.92618 0.96887 0.85257 0.91370 0.91680 0.94184 0.89862 0.93124 0.92451 0.95703 0.93461 0.93861 0.89670 0.92410 0.91103 0.88504 0.91690 0.87410 0.74774 0.92057 0.93923 0.92213 0.92184 0.75360 0.91433 0.91719 0.94469 0.97051 0.95897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.19 71.98 0.66 -2.11 16 2 C -0.08 -1.74 2.94 -10.79 -0.03 -1.77 16 3 C -0.13 -3.43 9.08 71.98 0.65 -2.77 16 4 C 0.06 1.33 4.01 86.30 0.35 1.68 16 5 N -0.50 -11.62 4.07 -861.03 -3.50 -15.13 16 6 C 0.03 0.47 5.80 86.45 0.50 0.98 16 7 C -0.12 -1.37 7.00 31.49 0.22 -1.15 16 8 C -0.11 -1.53 6.49 31.49 0.20 -1.33 16 9 C 0.05 1.00 2.68 44.32 0.12 1.12 16 10 H 0.09 1.63 8.00 -2.39 -0.02 1.62 16 11 C 0.52 16.13 6.59 87.66 0.58 16.70 16 12 O -0.56 -23.69 13.71 -3.02 -0.04 -23.73 16 13 N -0.70 -20.11 5.17 -421.96 -2.18 -22.29 16 14 C 0.16 6.00 0.78 4.17 0.00 6.00 16 15 C -0.09 -3.74 4.89 30.60 0.15 -3.59 16 16 C 0.10 2.91 6.88 71.98 0.50 3.41 16 17 O -0.60 -18.32 13.66 -148.98 -2.03 -20.35 16 18 C 0.13 4.79 7.81 83.18 0.65 5.44 16 19 N -0.63 -33.02 3.55 -737.95 -2.62 -35.64 16 20 C -0.23 -13.08 10.75 84.03 0.90 -12.18 16 21 H 0.09 5.00 7.83 -2.91 -0.02 4.98 16 22 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 23 N -0.96 -61.59 11.50 21.65 0.25 -61.34 16 24 Si 0.98 47.26 29.55 68.60 2.03 49.29 16 25 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 27 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 28 C 0.16 8.10 6.79 83.26 0.57 8.67 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 1.49 7.16 -2.39 -0.02 1.47 16 33 H 0.05 1.50 7.74 -2.39 -0.02 1.48 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.02 0.78 8.14 -2.39 -0.02 0.77 16 36 H 0.05 0.95 7.84 -2.39 -0.02 0.93 16 37 H 0.04 1.39 7.30 -2.38 -0.02 1.38 16 38 H 0.08 1.25 7.68 -2.39 -0.02 1.23 16 39 H 0.06 0.72 7.79 -2.39 -0.02 0.70 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.06 1.11 7.85 -2.39 -0.02 1.09 16 43 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 44 H 0.41 8.24 8.68 -92.71 -0.80 7.43 16 45 H 0.06 2.87 5.98 -2.39 -0.01 2.85 16 46 H 0.04 2.14 7.94 -2.39 -0.02 2.12 16 47 H 0.06 1.61 6.65 -2.39 -0.02 1.59 16 48 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 49 H 0.40 7.20 9.12 -74.05 -0.68 6.52 16 50 H 0.07 2.31 6.71 -2.38 -0.02 2.29 16 51 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 52 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 53 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 54 H 0.02 1.42 7.09 -2.38 -0.02 1.40 16 Total: -1.00 -83.40 418.97 -2.22 -85.62 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: -0.59 Total: 28.10 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 6.49 Total: 15.47 kcal Atomic # 7 Polarization: -126.33 SS G_CDS: -8.06 Total: -134.40 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -2.08 Total: -44.08 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -83.40 -2.22 -85.62 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725200546.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.013 kcal (2) G-P(sol) polarization free energy of solvation -83.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds