Wall clock time and date at job start Tue Mar 31 2020 23:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47275 * 2 1 4 4 C 1.52999 * 109.47592 * 120.00306 * 2 1 3 5 5 N 1.46905 * 109.47015 * 64.99607 * 4 2 1 6 6 C 1.47444 * 110.99628 * 69.16077 * 5 4 2 7 7 C 1.54363 * 107.25025 * 123.29095 * 6 5 4 8 8 C 1.55141 * 102.99664 * 22.22794 * 7 6 5 9 9 C 1.47843 * 110.99952 * 190.00276 * 5 4 2 10 10 H 1.09004 * 110.37192 * 332.46993 * 9 5 4 11 11 C 1.50698 * 110.46539 * 94.76291 * 9 5 4 12 12 O 1.21280 * 120.00367 * 356.87907 * 11 9 5 13 13 N 1.34780 * 119.99426 * 176.88533 * 11 9 5 14 14 C 1.46504 * 119.99559 * 174.80112 * 13 11 9 15 15 C 1.53002 * 112.94153 * 295.30611 * 14 13 11 16 16 C 1.52995 * 109.47046 * 304.23062 * 15 14 13 17 17 O 1.42905 * 109.47019 * 178.36866 * 16 15 14 18 18 C 1.53941 * 113.74185 * 163.71792 * 14 13 11 19 19 N 1.47818 * 86.03859 * 222.08260 * 18 14 13 20 20 C 1.36926 * 134.45800 * 204.64491 * 19 18 14 21 21 H 1.08004 * 119.99947 * 179.86374 * 20 19 18 22 22 C 1.38818 * 120.00158 * 359.86410 * 20 19 18 23 23 N 1.31618 * 119.99758 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99920 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47370 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47153 * 120.00126 * 24 22 20 27 27 H 1.48508 * 109.46751 * 239.99834 * 24 22 20 28 28 C 1.47579 * 91.04752 * 24.54607 * 19 18 14 29 29 H 1.09005 * 109.47732 * 59.99544 * 1 2 3 30 30 H 1.09002 * 109.47393 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47014 * 299.99694 * 1 2 3 32 32 H 1.09002 * 109.47014 * 240.00306 * 2 1 3 33 33 H 1.09000 * 109.47226 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47113 * 300.00835 * 3 2 1 35 35 H 1.09002 * 109.46849 * 60.00206 * 3 2 1 36 36 H 1.09005 * 109.46510 * 305.00292 * 4 2 1 37 37 H 1.08995 * 109.47045 * 185.00072 * 4 2 1 38 38 H 1.09001 * 109.88785 * 242.65977 * 6 5 4 39 39 H 1.08998 * 109.89185 * 3.84910 * 6 5 4 40 40 H 1.08997 * 110.68820 * 263.86653 * 7 6 5 41 41 H 1.08993 * 110.74497 * 140.61607 * 7 6 5 42 42 H 1.09004 * 110.98789 * 206.28942 * 8 7 6 43 43 H 1.08998 * 110.99250 * 82.50650 * 8 7 6 44 44 H 0.96994 * 120.00563 * 354.79149 * 13 11 9 45 45 H 1.08992 * 109.47050 * 64.23678 * 15 14 13 46 46 H 1.09005 * 109.46813 * 184.23491 * 15 14 13 47 47 H 1.09001 * 109.47807 * 298.36849 * 16 15 14 48 48 H 1.09000 * 109.47304 * 58.37467 * 16 15 14 49 49 H 0.96706 * 114.00121 * 180.02562 * 17 16 15 50 50 H 1.09007 * 113.76909 * 336.34203 * 18 14 13 51 51 H 1.08995 * 113.77440 * 107.74577 * 18 14 13 52 52 H 0.96998 * 119.99688 * 180.02562 * 23 22 20 53 53 H 1.08999 * 113.77155 * 221.15309 * 28 19 18 54 54 H 1.09004 * 113.87071 * 89.76706 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6514 -2.1368 1.1903 6 6 2.3918 -2.8443 0.1296 7 6 3.1260 -4.0278 0.7952 8 6 2.3086 -4.2599 2.0932 9 6 1.9142 -2.8124 2.4788 10 1 2.7344 -2.3226 3.0037 11 6 0.6734 -2.8168 3.3341 12 8 -0.3314 -2.2583 2.9479 13 7 0.6806 -3.4414 4.5284 14 6 -0.4860 -3.3499 5.4098 15 6 -0.7500 -1.9261 5.9039 16 6 0.5034 -1.3856 6.5951 17 8 0.2696 -0.0423 7.0229 18 6 -0.5020 -4.4071 6.5287 19 7 -1.9432 -4.5498 6.2328 20 6 -3.0323 -4.9695 6.9488 21 1 -4.0098 -4.9782 6.4896 22 6 -2.8800 -5.3839 8.2649 23 7 -1.6886 -5.3739 8.8243 24 14 -4.3656 -5.9572 9.2414 25 1 -5.5796 -5.8740 8.3903 26 1 -4.1604 -7.3623 9.6757 27 1 -4.5380 -5.0903 10.4349 28 6 -1.7374 -4.0562 4.8573 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6765 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -0.2618 2.1369 37 1 3.1263 -0.6443 1.2950 38 1 1.6966 -3.2161 -0.6231 39 1 3.1146 -2.1707 -0.3307 40 1 4.1556 -3.7587 1.0311 41 1 3.0939 -4.9104 0.1565 42 1 2.9261 -4.7156 2.8673 43 1 1.4245 -4.8658 1.8948 44 1 1.4580 -3.9517 4.8043 45 1 -1.0014 -1.2883 5.0566 46 1 -1.5796 -1.9348 6.6109 47 1 0.7381 -2.0066 7.4596 48 1 1.3400 -1.4039 5.8966 49 1 1.0241 0.3651 7.4701 50 1 0.0837 -5.2976 6.3001 51 1 -0.2937 -4.0021 7.5189 52 1 -1.5822 -5.6638 9.7438 53 1 -2.5134 -3.3714 4.5155 54 1 -1.5154 -4.8420 4.1352 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725200547.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:40 Heat of formation + Delta-G solvation = -56.973762 kcal Electronic energy + Delta-G solvation = -31865.739646 eV Core-core repulsion = 27838.025482 eV Total energy + Delta-G solvation = -4027.714164 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.59500 -40.32891 -38.61562 -37.71491 -36.49855 -35.19691 -33.76736 -32.09243 -31.85042 -30.23630 -28.91059 -27.92301 -26.83980 -26.33406 -25.23161 -23.72970 -23.01787 -22.41275 -20.91618 -20.38142 -20.03200 -18.78109 -18.45219 -18.25960 -17.41313 -17.01651 -16.67826 -16.29845 -15.89386 -15.77057 -15.66888 -15.46217 -15.22721 -14.94588 -14.52258 -14.39133 -14.19019 -13.95469 -13.75541 -13.65922 -13.33016 -13.19499 -13.10928 -12.92264 -12.81234 -12.73759 -12.62072 -12.57621 -12.45007 -12.24391 -12.04468 -11.99779 -11.78144 -11.72982 -11.60424 -11.56015 -11.40511 -11.36739 -10.97153 -10.87267 -10.47993 -9.94903 -9.14799 -8.95840 -7.93668 -5.26306 1.45168 1.46187 1.56293 1.84083 2.08581 2.48016 3.07212 3.15138 3.26756 3.39930 3.61259 3.62494 3.71898 3.96417 4.01583 4.09186 4.13048 4.17066 4.26607 4.30810 4.32813 4.34199 4.48390 4.58682 4.60682 4.72112 4.73151 4.74303 4.79927 4.85480 4.86532 4.87687 4.97418 5.01217 5.04788 5.08790 5.12414 5.12923 5.15308 5.19108 5.23734 5.28821 5.36441 5.47423 5.48563 5.57459 5.77160 5.89673 6.00387 6.21311 6.78819 6.90355 6.90590 7.50606 7.56134 8.50091 9.23324 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015418 B = 0.002965 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.643778 B = 9442.763233 C =10041.671513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 C -0.143 4.143 4 C 0.064 3.936 5 N -0.527 5.527 6 C 0.043 3.957 7 C -0.130 4.130 8 C -0.118 4.118 9 C 0.060 3.940 10 H 0.098 0.902 11 C 0.517 3.483 12 O -0.553 6.553 13 N -0.709 5.709 14 C 0.160 3.840 15 C -0.087 4.087 16 C 0.095 3.905 17 O -0.593 6.593 18 C 0.174 3.826 19 N -0.632 5.632 20 C -0.236 4.236 21 H 0.077 0.923 22 C -0.058 4.058 23 N -0.946 5.946 24 Si 0.977 3.023 25 H -0.271 1.271 26 H -0.288 1.288 27 H -0.290 1.290 28 C 0.128 3.872 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.031 0.969 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.062 0.938 44 H 0.412 0.588 45 H 0.058 0.942 46 H 0.049 0.951 47 H 0.048 0.952 48 H 0.061 0.939 49 H 0.396 0.604 50 H 0.035 0.965 51 H 0.058 0.942 52 H 0.251 0.749 53 H 0.033 0.967 54 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.312 7.952 -16.225 25.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.103 4.103 3 C -0.201 4.201 4 C -0.064 4.064 5 N -0.252 5.252 6 C -0.084 4.084 7 C -0.169 4.169 8 C -0.156 4.156 9 C -0.052 4.052 10 H 0.116 0.884 11 C 0.304 3.696 12 O -0.429 6.429 13 N -0.363 5.363 14 C 0.072 3.928 15 C -0.126 4.126 16 C 0.017 3.983 17 O -0.401 6.401 18 C 0.048 3.952 19 N -0.359 5.359 20 C -0.365 4.365 21 H 0.094 0.906 22 C -0.251 4.251 23 N -0.594 5.594 24 Si 0.805 3.195 25 H -0.196 1.196 26 H -0.215 1.215 27 H -0.217 1.217 28 C 0.002 3.998 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.123 0.877 43 H 0.081 0.919 44 H 0.248 0.752 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.246 0.754 50 H 0.053 0.947 51 H 0.077 0.923 52 H 0.060 0.940 53 H 0.052 0.948 54 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 16.300 8.142 -16.632 24.670 hybrid contribution 0.291 -0.621 1.375 1.537 sum 16.592 7.521 -15.256 23.761 Atomic orbital electron populations 1.21600 0.95832 1.01216 1.00032 1.21068 0.95604 0.96227 0.97447 1.21795 1.01341 0.95022 1.01919 1.22293 0.97812 0.87730 0.98554 1.62922 1.57145 1.02304 1.02819 1.22902 0.95937 0.95549 0.94041 1.22773 0.99310 0.98864 0.95917 1.22723 1.00613 0.92903 0.99407 1.22474 0.93393 0.97821 0.91464 0.88406 1.21025 0.90280 0.77464 0.80878 1.90680 1.35434 1.44969 1.71787 1.45939 1.18866 1.53789 1.17688 1.22085 0.85730 0.94171 0.90777 1.21159 0.98277 0.93830 0.99378 1.21930 0.96347 0.82515 0.97500 1.86446 1.45052 1.28395 1.80240 1.22446 0.84391 0.92791 0.95530 1.46020 1.04108 1.76869 1.08908 1.19330 0.86948 1.36315 0.93880 0.90557 1.25530 0.99702 1.02207 0.97690 1.69939 1.22193 1.53901 1.13364 0.85038 0.78867 0.77252 0.78323 1.19592 1.21456 1.21680 1.22824 0.95105 0.94352 0.87560 0.92814 0.93571 0.95017 0.90488 0.91558 0.91865 0.93461 0.93160 0.93082 0.91357 0.90954 0.89396 0.89407 0.87654 0.91946 0.75174 0.92309 0.93223 0.93410 0.92059 0.75386 0.94709 0.92349 0.93966 0.94832 0.94375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.08 71.98 0.65 -2.40 16 2 C -0.08 -1.54 2.88 -10.80 -0.03 -1.57 16 3 C -0.14 -2.10 9.19 71.98 0.66 -1.44 16 4 C 0.06 1.25 3.92 86.30 0.34 1.59 16 5 N -0.53 -11.27 3.81 -864.88 -3.29 -14.56 16 6 C 0.04 0.66 6.13 86.66 0.53 1.19 16 7 C -0.13 -1.52 6.95 31.79 0.22 -1.30 16 8 C -0.12 -1.85 6.35 31.98 0.20 -1.65 16 9 C 0.06 1.23 2.81 44.64 0.13 1.35 16 10 H 0.10 1.58 7.81 -2.38 -0.02 1.56 16 11 C 0.52 15.26 6.87 87.66 0.60 15.86 16 12 O -0.55 -21.54 14.89 -3.03 -0.05 -21.59 16 13 N -0.71 -20.34 4.48 -427.54 -1.92 -22.26 16 14 C 0.16 6.17 0.67 5.36 0.00 6.17 16 15 C -0.09 -3.50 4.81 30.59 0.15 -3.35 16 16 C 0.09 3.00 6.83 71.98 0.49 3.50 16 17 O -0.59 -18.38 13.66 -148.98 -2.04 -20.42 16 18 C 0.17 7.93 6.69 86.44 0.58 8.51 16 19 N -0.63 -33.45 3.55 -715.44 -2.54 -35.99 16 20 C -0.24 -13.69 10.70 84.04 0.90 -12.79 16 21 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 22 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 23 N -0.95 -55.62 11.39 21.65 0.25 -55.37 16 24 Si 0.98 46.30 29.55 68.60 2.03 48.33 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 26 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 27 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 28 C 0.13 5.86 7.55 86.49 0.65 6.52 16 29 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.05 1.31 7.75 -2.39 -0.02 1.29 16 31 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 1.25 6.99 -2.39 -0.02 1.23 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 34 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.05 1.24 8.08 -2.38 -0.02 1.22 16 37 H 0.05 0.78 7.98 -2.39 -0.02 0.76 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 0.89 6.91 -2.39 -0.02 0.87 16 40 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.06 1.26 8.05 -2.39 -0.02 1.24 16 44 H 0.41 9.04 8.62 -92.71 -0.80 8.24 16 45 H 0.06 2.51 7.09 -2.39 -0.02 2.49 16 46 H 0.05 2.36 8.02 -2.38 -0.02 2.34 16 47 H 0.05 1.54 7.54 -2.39 -0.02 1.52 16 48 H 0.06 1.62 7.62 -2.39 -0.02 1.60 16 49 H 0.40 7.57 9.12 -74.05 -0.68 6.90 16 50 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 51 H 0.06 2.93 6.56 -2.39 -0.02 2.92 16 52 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 53 H 0.03 1.63 8.10 -2.39 -0.02 1.61 16 54 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -75.26 421.54 -1.60 -76.86 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: -0.60 Total: 27.64 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 6.55 Total: 17.35 kcal Atomic # 7 Polarization: -120.68 SS G_CDS: -7.50 Total: -128.18 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -2.08 Total: -42.00 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -75.26 -1.60 -76.86 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725200547.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.884 kcal (2) G-P(sol) polarization free energy of solvation -75.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds