Wall clock time and date at job start Tue Mar 31 2020 22:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21287 * 120.00049 * 2 1 4 4 N 1.34783 * 120.00232 * 179.97438 * 2 1 3 5 5 C 1.48117 * 127.03075 * 359.95907 * 4 2 1 6 6 C 1.54945 * 103.25112 * 140.74019 * 5 4 2 7 7 C 1.54611 * 102.84033 * 37.38116 * 6 5 4 8 8 C 1.52999 * 110.41787 * 97.08175 * 7 6 5 9 9 C 1.50705 * 110.32594 * 219.25830 * 7 6 5 10 10 O 1.21274 * 119.99700 * 357.07170 * 9 7 6 11 11 N 1.34773 * 119.99941 * 177.07124 * 9 7 6 12 12 C 1.46498 * 120.00043 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.47272 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.47269 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.46953 * 305.00936 * 14 13 12 16 16 N 1.46505 * 109.46807 * 65.00478 * 14 13 12 17 17 C 1.36931 * 119.99788 * 205.00000 * 16 14 13 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 14 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 14 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48498 * 109.47174 * 90.00121 * 21 19 17 23 23 H 1.48501 * 109.47062 * 210.00072 * 21 19 17 24 24 H 1.48504 * 109.46913 * 329.99871 * 21 19 17 25 25 C 1.52996 * 109.47332 * 185.00423 * 14 13 12 26 26 C 1.52998 * 109.46903 * 305.00350 * 25 14 13 27 27 C 1.52993 * 109.46923 * 65.00088 * 25 14 13 28 28 C 1.47480 * 127.03325 * 180.02562 * 4 2 1 29 29 H 1.09000 * 109.47164 * 269.99990 * 1 2 3 30 30 H 1.08996 * 109.47278 * 30.00217 * 1 2 3 31 31 H 1.09004 * 109.47166 * 150.00611 * 1 2 3 32 32 H 1.08994 * 110.66065 * 259.18410 * 5 4 2 33 33 H 1.08998 * 110.66132 * 22.13860 * 5 4 2 34 34 H 1.08996 * 110.74168 * 279.03662 * 6 5 4 35 35 H 1.09009 * 110.73328 * 155.71487 * 6 5 4 36 36 H 1.08999 * 109.47297 * 181.49167 * 8 7 6 37 37 H 1.08999 * 109.47227 * 301.49322 * 8 7 6 38 38 H 1.08998 * 109.46607 * 61.49184 * 8 7 6 39 39 H 0.97004 * 120.00109 * 359.97438 * 11 9 7 40 40 H 1.09000 * 109.46784 * 60.00269 * 12 11 9 41 41 H 1.08992 * 109.47427 * 300.00334 * 12 11 9 42 42 H 1.09000 * 109.46766 * 60.00541 * 13 12 11 43 43 H 1.08992 * 109.47398 * 300.00634 * 13 12 11 44 44 H 0.97000 * 119.99792 * 24.99795 * 16 14 13 45 45 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 46 46 H 1.08990 * 109.47060 * 185.00303 * 25 14 13 47 47 H 1.09003 * 109.47634 * 60.00178 * 26 25 14 48 48 H 1.09004 * 109.47209 * 179.97438 * 26 25 14 49 49 H 1.08998 * 109.47363 * 299.99597 * 26 25 14 50 50 H 1.09004 * 109.47296 * 60.00553 * 27 25 14 51 51 H 1.09006 * 109.47144 * 179.97438 * 27 25 14 52 52 H 1.08998 * 109.47742 * 299.99844 * 27 25 14 53 53 H 1.08995 * 109.91847 * 86.05433 * 28 4 2 54 54 H 1.09000 * 110.07371 * 324.85729 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.6029 -2.5310 0.0020 6 6 2.5390 -3.3144 -0.9524 7 6 3.9308 -2.7232 -0.6305 8 6 4.6747 -3.6189 0.3620 9 6 4.7360 -2.5619 -1.8942 10 8 4.2802 -2.9327 -2.9551 11 7 5.9626 -2.0055 -1.8453 12 6 6.7456 -1.8492 -3.0735 13 6 8.0887 -1.1954 -2.7425 14 6 8.9062 -1.0316 -4.0254 15 1 9.0032 -1.9979 -4.5202 16 7 8.2274 -0.0908 -4.9201 17 6 8.4438 -0.1531 -6.2708 18 1 9.1146 -0.8959 -6.6766 19 6 7.7962 0.7346 -7.1191 20 7 6.9784 1.6395 -6.6246 21 14 8.0855 0.6447 -8.9624 22 1 7.0945 -0.2763 -9.5747 23 1 7.9344 1.9985 -9.5538 24 1 9.4576 0.1405 -9.2241 25 6 10.2961 -0.4938 -3.6794 26 6 10.1565 0.8004 -2.8754 27 6 11.0519 -1.5319 -2.8476 28 6 3.6446 -1.3477 0.0011 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3634 -0.8901 -0.5138 32 1 1.6297 -2.9589 1.0040 33 1 0.5828 -2.5168 -0.3817 34 1 2.2721 -3.1293 -1.9929 35 1 2.5119 -4.3812 -0.7298 36 1 5.6417 -3.1748 0.5982 37 1 4.0870 -3.7163 1.2747 38 1 4.8255 -4.6038 -0.0800 39 1 6.3270 -1.7085 -0.9967 40 1 6.1986 -1.2196 -3.7753 41 1 6.9180 -2.8277 -3.5215 42 1 8.6358 -1.8247 -2.0405 43 1 7.9159 -0.2169 -2.2947 44 1 7.6246 0.5761 -4.5557 45 1 6.5261 2.2601 -7.2174 46 1 10.8471 -0.2932 -4.5981 47 1 9.6054 0.5998 -1.9566 48 1 11.1467 1.1833 -2.6284 49 1 9.6180 1.5400 -3.4680 50 1 11.1514 -2.4539 -3.4204 51 1 12.0424 -1.1489 -2.6014 52 1 10.5009 -1.7325 -1.9288 53 1 4.0214 -1.3230 1.0236 54 1 4.1186 -0.5628 -0.5882 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725445964.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:57 Heat of formation + Delta-G solvation = -102.136274 kcal Electronic energy + Delta-G solvation = -30878.183692 eV Core-core repulsion = 26848.511134 eV Total energy + Delta-G solvation = -4029.672558 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.82936 -40.40930 -39.16436 -38.27418 -36.02790 -35.08168 -34.28427 -32.55470 -31.23837 -30.89094 -30.17992 -27.90183 -27.28989 -26.82106 -25.17614 -24.65299 -23.52189 -22.70826 -20.66202 -20.43024 -19.70600 -19.23303 -18.46579 -17.57838 -17.28051 -17.02588 -16.82325 -16.45650 -16.31748 -15.90959 -15.62988 -15.39681 -15.09833 -14.88942 -14.68861 -14.58682 -14.37847 -13.85163 -13.66633 -13.60789 -13.55685 -13.21068 -13.16739 -13.06183 -12.92847 -12.91352 -12.81385 -12.67479 -12.56034 -12.49890 -12.21845 -12.11071 -12.04852 -11.88762 -11.79376 -11.68112 -11.43470 -11.23068 -11.05060 -10.88985 -10.74672 -10.14287 -9.80540 -8.94765 -7.93331 -5.19401 1.42654 1.44773 1.49589 1.52338 1.58854 1.93036 2.16404 2.55421 3.23852 3.40255 3.44367 3.69485 3.81378 3.89341 3.94190 4.00588 4.08470 4.17825 4.28916 4.32132 4.37929 4.40059 4.48087 4.53311 4.56228 4.59328 4.68408 4.73143 4.76337 4.81147 4.81844 4.90517 4.94094 4.97588 4.97969 5.05251 5.11031 5.17153 5.18686 5.21774 5.28865 5.33754 5.36062 5.42030 5.45565 5.50464 5.64969 5.72705 6.29191 6.46835 6.51927 7.06873 7.21533 7.35088 8.14269 8.34886 9.30209 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010244 B = 0.002904 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.766357 B = 9639.563015 C =10803.950334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.514 3.486 3 O -0.607 6.607 4 N -0.626 5.626 5 C 0.102 3.898 6 C -0.120 4.120 7 C -0.084 4.084 8 C -0.130 4.130 9 C 0.512 3.488 10 O -0.586 6.586 11 N -0.712 5.712 12 C 0.134 3.866 13 C -0.119 4.119 14 C 0.179 3.821 15 H 0.039 0.961 16 N -0.730 5.730 17 C -0.229 4.229 18 H 0.073 0.927 19 C -0.078 4.078 20 N -0.971 5.971 21 Si 0.964 3.036 22 H -0.293 1.293 23 H -0.298 1.298 24 H -0.268 1.268 25 C -0.109 4.109 26 C -0.132 4.132 27 C -0.136 4.136 28 C 0.112 3.888 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.057 0.943 35 H 0.116 0.884 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.414 0.586 40 H 0.028 0.972 41 H 0.053 0.947 42 H 0.109 0.891 43 H 0.069 0.931 44 H 0.370 0.630 45 H 0.247 0.753 46 H 0.038 0.962 47 H 0.067 0.933 48 H 0.054 0.946 49 H 0.024 0.976 50 H 0.051 0.949 51 H 0.058 0.942 52 H 0.073 0.927 53 H 0.107 0.893 54 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.704 -14.459 24.188 29.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.306 3.694 3 O -0.489 6.489 4 N -0.359 5.359 5 C -0.019 4.019 6 C -0.159 4.159 7 C -0.088 4.088 8 C -0.187 4.187 9 C 0.299 3.701 10 O -0.466 6.466 11 N -0.363 5.363 12 C 0.010 3.990 13 C -0.157 4.157 14 C 0.070 3.930 15 H 0.057 0.943 16 N -0.369 5.369 17 C -0.361 4.361 18 H 0.091 0.909 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.794 3.206 22 H -0.220 1.220 23 H -0.225 1.225 24 H -0.192 1.192 25 C -0.131 4.131 26 C -0.190 4.190 27 C -0.194 4.194 28 C -0.012 4.012 29 H 0.139 0.861 30 H 0.106 0.894 31 H 0.124 0.876 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.087 0.913 39 H 0.251 0.749 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.127 0.873 43 H 0.088 0.912 44 H 0.202 0.798 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.086 0.914 48 H 0.073 0.927 49 H 0.043 0.957 50 H 0.070 0.930 51 H 0.077 0.923 52 H 0.092 0.908 53 H 0.125 0.875 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.679 -14.152 23.262 28.291 hybrid contribution 0.178 1.107 -1.631 1.979 sum -7.501 -13.045 21.631 26.351 Atomic orbital electron populations 1.21916 0.87423 1.05934 1.06632 1.21466 0.92297 0.81305 0.74345 1.90732 1.72250 1.32889 1.53014 1.49027 1.07268 1.07221 1.72402 1.22956 0.98585 0.78872 1.01443 1.22818 0.91160 1.01750 1.00146 1.21749 0.97049 0.97173 0.92864 1.21903 1.00680 0.98268 0.97833 1.21130 0.81643 0.76184 0.91123 1.90699 1.70930 1.51449 1.33525 1.45928 1.17102 1.61904 1.11398 1.21083 0.92253 0.99554 0.86149 1.22014 0.93721 1.01411 0.98540 1.20430 0.91038 0.91987 0.89519 0.94281 1.42602 1.53133 1.38465 1.02720 1.19573 1.19951 1.11838 0.84720 0.90903 1.25462 1.00567 0.99080 1.01875 1.69822 1.34637 1.22964 1.34803 0.85261 0.77932 0.76152 0.81220 1.22017 1.22453 1.19237 1.21630 0.97089 0.96391 0.97953 1.21687 1.00882 0.96941 0.99442 1.21813 0.99899 0.97809 0.99888 1.22130 0.82380 0.94752 1.01935 0.86093 0.89436 0.87595 0.86670 0.87488 0.92457 0.86540 0.90614 0.88060 0.91260 0.74905 0.95379 0.92834 0.87304 0.91200 0.79844 0.94438 0.94365 0.91378 0.92677 0.95698 0.92972 0.92276 0.90809 0.87547 0.93790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.94 71.23 0.71 -1.39 16 2 C 0.51 12.46 8.00 87.65 0.70 13.16 16 3 O -0.61 -21.89 17.44 -3.05 -0.05 -21.94 16 4 N -0.63 -12.14 3.29 -809.35 -2.66 -14.80 16 5 C 0.10 1.03 6.94 86.73 0.60 1.63 16 6 C -0.12 -1.88 5.96 31.81 0.19 -1.69 16 7 C -0.08 -1.50 0.80 -52.03 -0.04 -1.54 16 8 C -0.13 -1.17 8.13 71.98 0.59 -0.59 16 9 C 0.51 14.91 6.32 87.66 0.55 15.46 16 10 O -0.59 -23.48 15.45 -3.01 -0.05 -23.52 16 11 N -0.71 -18.97 5.30 -463.08 -2.46 -21.42 16 12 C 0.13 4.61 5.56 86.38 0.48 5.09 16 13 C -0.12 -3.50 4.07 30.60 0.12 -3.38 16 14 C 0.18 6.77 2.06 44.99 0.09 6.86 16 15 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 16 N -0.73 -36.87 4.03 -322.93 -1.30 -38.17 16 17 C -0.23 -13.00 9.93 84.04 0.83 -12.17 16 18 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 19 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 20 N -0.97 -62.45 13.06 21.65 0.28 -62.17 16 21 Si 0.96 48.55 29.55 68.60 2.03 50.58 16 22 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 23 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 24 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 25 C -0.11 -3.63 2.88 -10.80 -0.03 -3.66 16 26 C -0.13 -4.23 8.59 71.98 0.62 -3.61 16 27 C -0.14 -3.23 8.95 71.98 0.64 -2.59 16 28 C 0.11 2.22 6.21 86.54 0.54 2.76 16 29 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.11 0.84 6.46 -2.39 -0.02 0.82 16 32 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.11 0.67 6.45 -2.39 -0.02 0.66 16 34 H 0.06 1.38 6.91 -2.39 -0.02 1.36 16 35 H 0.12 1.16 7.86 -2.38 -0.02 1.14 16 36 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 37 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.41 7.80 7.96 -92.71 -0.74 7.06 16 40 H 0.03 1.28 7.75 -2.39 -0.02 1.27 16 41 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.11 2.31 6.35 -2.39 -0.02 2.30 16 43 H 0.07 2.10 6.65 -2.39 -0.02 2.08 16 44 H 0.37 20.56 7.80 -92.71 -0.72 19.84 16 45 H 0.25 15.57 8.31 -92.70 -0.77 14.80 16 46 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.07 1.83 6.46 -2.39 -0.02 1.82 16 48 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.02 0.98 7.75 -2.39 -0.02 0.96 16 50 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 51 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 52 H 0.07 1.41 6.46 -2.39 -0.02 1.39 16 53 H 0.11 1.49 7.68 -2.39 -0.02 1.47 16 54 H 0.04 1.23 7.51 -2.39 -0.02 1.21 16 Total: -1.00 -88.77 422.61 2.29 -86.48 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: -0.57 Total: 34.82 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 7.07 Total: 10.14 kcal Atomic # 7 Polarization: -130.42 SS G_CDS: -6.14 Total: -136.56 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -0.10 Total: -45.47 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.58 kcal Total: -88.77 2.29 -86.48 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725445964.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.655 kcal (2) G-P(sol) polarization free energy of solvation -88.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds