Wall clock time and date at job start Tue Mar 31 2020 23:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47061 * 2 1 4 4 C 1.52997 * 109.47401 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47063 * 54.99586 * 4 3 2 6 6 C 1.53006 * 109.46928 * 295.00404 * 4 3 2 7 7 C 1.50695 * 109.47491 * 174.99907 * 4 3 2 8 8 O 1.21283 * 120.00136 * 0.02562 * 7 4 3 9 9 N 1.34782 * 119.99940 * 179.97438 * 7 4 3 10 10 C 1.46505 * 119.99606 * 180.02562 * 9 7 4 11 11 H 1.08998 * 109.47133 * 35.00285 * 10 9 7 12 12 C 1.53003 * 109.46784 * 155.00303 * 10 9 7 13 13 C 1.52993 * 109.46905 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47293 * 299.99613 * 13 12 10 15 15 H 1.08997 * 109.46962 * 300.00545 * 14 13 12 16 16 N 1.46895 * 109.47390 * 179.97438 * 14 13 12 17 17 C 1.46904 * 111.00011 * 154.99967 * 16 14 13 18 18 C 1.50700 * 109.47192 * 180.02562 * 17 16 14 19 19 O 1.21293 * 119.99810 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99675 * 180.28082 * 18 17 16 21 21 C 1.37102 * 119.99634 * 179.72687 * 20 18 17 22 22 H 1.08002 * 119.99868 * 359.97438 * 21 20 18 23 23 C 1.38945 * 119.99860 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99894 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99956 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47024 * 90.00281 * 25 23 21 27 27 H 1.48499 * 109.47039 * 210.00444 * 25 23 21 28 28 H 1.48501 * 109.47275 * 330.00244 * 25 23 21 29 29 C 1.53006 * 109.46515 * 60.00148 * 14 13 12 30 30 C 1.52993 * 109.47219 * 299.99897 * 29 14 13 31 31 H 1.09000 * 109.46744 * 60.00397 * 1 2 3 32 32 H 1.09007 * 109.46627 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.46928 * 299.99794 * 1 2 3 34 34 H 1.09003 * 109.47284 * 239.99883 * 2 1 3 35 35 H 1.08997 * 109.46862 * 120.00120 * 2 1 3 36 36 H 1.09003 * 109.47167 * 59.99811 * 3 2 1 37 37 H 1.08997 * 109.47381 * 299.99803 * 3 2 1 38 38 H 1.09002 * 109.46900 * 179.97438 * 6 4 3 39 39 H 1.08992 * 109.46986 * 299.99300 * 6 4 3 40 40 H 1.09000 * 109.47429 * 59.99663 * 6 4 3 41 41 H 0.96994 * 120.00069 * 0.02562 * 9 7 4 42 42 H 1.09005 * 109.46893 * 59.99576 * 12 10 9 43 43 H 1.09001 * 109.47140 * 299.99818 * 12 10 9 44 44 H 1.08999 * 109.47274 * 179.97438 * 13 12 10 45 45 H 1.08997 * 109.47562 * 59.99791 * 13 12 10 46 46 H 1.00893 * 111.00470 * 278.95955 * 16 14 13 47 47 H 1.09009 * 109.46542 * 60.00300 * 17 16 14 48 48 H 1.08998 * 109.47050 * 300.00834 * 17 16 14 49 49 H 0.97001 * 120.00485 * 359.71840 * 20 18 17 50 50 H 0.97004 * 119.99542 * 179.97438 * 24 23 21 51 51 H 1.08997 * 109.47181 * 60.00531 * 29 14 13 52 52 H 1.09001 * 109.46825 * 180.02562 * 29 14 13 53 53 H 1.09005 * 109.47679 * 300.00120 * 30 29 14 54 54 H 1.09008 * 109.47103 * 180.02562 * 30 29 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0795 0.8330 1.3083 7 6 4.0724 2.8579 -0.1232 8 8 3.2843 3.7763 -0.2036 9 7 5.3975 3.1033 -0.1436 10 6 5.8859 4.4793 -0.2635 11 1 5.2129 5.1513 0.2690 12 6 7.2880 4.5773 0.3410 13 6 7.7983 6.0141 0.2153 14 6 7.8510 6.4093 -1.2619 15 1 8.5238 5.7368 -1.7941 16 7 8.3403 7.7890 -1.3826 17 6 8.9592 8.0152 -2.6956 18 6 9.4485 9.4379 -2.7819 19 8 9.2971 10.1894 -1.8420 20 7 10.0498 9.8767 -3.9055 21 6 10.4900 11.1726 -3.9861 22 1 10.3546 11.8419 -3.1494 23 6 11.1104 11.6248 -5.1442 24 7 11.2747 10.8105 -6.1625 25 14 11.7095 13.3907 -5.2544 26 1 13.1110 13.4689 -4.7700 27 1 11.6473 13.8474 -6.6660 28 1 10.8463 14.2596 -4.4146 29 6 6.4488 6.3112 -1.8663 30 6 5.9385 4.8744 -1.7406 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6768 1.9563 -0.8900 38 1 5.1695 0.8327 1.3086 39 1 3.7158 1.4226 2.1498 40 1 3.7161 -0.1907 1.3979 41 1 6.0278 2.3688 -0.0790 42 1 7.9610 3.9051 -0.1916 43 1 7.2506 4.2954 1.3932 44 1 8.7970 6.0841 0.6462 45 1 7.1254 6.6865 0.7474 46 1 7.5987 8.4519 -1.2134 47 1 8.2236 7.8354 -3.4797 48 1 9.8001 7.3336 -2.8231 49 1 10.1713 9.2756 -4.6571 50 1 11.7075 11.1263 -6.9711 51 1 5.7759 6.9837 -1.3342 52 1 6.4863 6.5923 -2.9188 53 1 6.6114 4.2019 -2.2728 54 1 4.9397 4.8045 -2.1716 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732305715.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:48 Heat of formation + Delta-G solvation = -138.187498 kcal Electronic energy + Delta-G solvation = -29188.002682 eV Core-core repulsion = 25156.766826 eV Total energy + Delta-G solvation = -4031.235856 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.28735 -40.29497 -39.44128 -37.01756 -36.42910 -35.86190 -34.17778 -33.26029 -32.67838 -31.75371 -29.85396 -27.64237 -27.45499 -25.77129 -24.73017 -23.70649 -22.61333 -21.76005 -21.44550 -21.02965 -20.45383 -19.88174 -18.09376 -17.77881 -17.34899 -16.92477 -16.57032 -16.35761 -16.09231 -15.93368 -15.60067 -15.30679 -15.21608 -15.09498 -14.83907 -14.62089 -14.14135 -14.01848 -13.91955 -13.62191 -13.48045 -13.43541 -13.20890 -13.13280 -13.05849 -12.82200 -12.73569 -12.43543 -12.33935 -12.19268 -12.12335 -12.09878 -12.08721 -11.84472 -11.71082 -11.51446 -11.47458 -11.40198 -11.32960 -10.66068 -10.34350 -10.02676 -10.01804 -9.26065 -8.47107 -5.95943 1.37802 1.41502 1.54273 1.67604 2.04912 2.19863 2.29247 2.93287 3.20131 3.50836 3.67132 3.72620 3.79463 3.82007 3.98004 4.03823 4.17099 4.26543 4.30616 4.33848 4.37330 4.40075 4.42368 4.47837 4.51486 4.54241 4.60354 4.65108 4.75899 4.80806 4.87295 4.91725 4.96966 5.00189 5.03920 5.07970 5.12975 5.16291 5.21509 5.25273 5.30598 5.37614 5.40390 5.40942 5.44887 5.50714 5.57977 5.92516 6.15480 6.40530 6.59949 6.61567 7.12233 7.32081 7.55797 8.11381 8.70246 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.030823 B = 0.001524 C = 0.001492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.203819 B =18363.318353 C =18767.565164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.100 4.100 4 C -0.105 4.105 5 H 0.119 0.881 6 C -0.142 4.142 7 C 0.509 3.491 8 O -0.590 6.590 9 N -0.712 5.712 10 C 0.147 3.853 11 H 0.059 0.941 12 C -0.110 4.110 13 C -0.100 4.100 14 C 0.091 3.909 15 H 0.091 0.909 16 N -0.677 5.677 17 C 0.066 3.934 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.274 1.274 29 C -0.143 4.143 30 C -0.113 4.113 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.087 0.913 41 H 0.416 0.584 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.053 0.947 46 H 0.341 0.659 47 H 0.063 0.937 48 H 0.106 0.894 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.053 0.947 52 H 0.059 0.941 53 H 0.082 0.918 54 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.536 -28.918 10.997 33.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.157 4.157 3 C -0.138 4.138 4 C -0.126 4.126 5 H 0.137 0.863 6 C -0.199 4.199 7 C 0.297 3.703 8 O -0.470 6.470 9 N -0.363 5.363 10 C 0.042 3.958 11 H 0.078 0.922 12 C -0.148 4.148 13 C -0.139 4.139 14 C -0.019 4.019 15 H 0.109 0.891 16 N -0.308 5.308 17 C -0.066 4.066 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.096 0.904 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.199 1.199 29 C -0.183 4.183 30 C -0.153 4.153 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.254 0.746 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.072 0.928 46 H 0.160 0.840 47 H 0.081 0.919 48 H 0.124 0.876 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.072 0.928 52 H 0.078 0.922 53 H 0.100 0.900 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.485 -27.864 11.690 33.090 hybrid contribution -0.372 0.957 -1.293 1.651 sum -13.857 -26.908 10.397 32.002 Atomic orbital electron populations 1.21794 0.96087 1.02034 1.01446 1.21572 0.95792 0.95172 1.03137 1.21398 0.93116 0.97677 1.01655 1.21383 0.97148 0.91536 1.02530 0.86313 1.21842 1.02153 1.01888 0.94026 1.21362 0.82317 0.92221 0.74361 1.90700 1.56645 1.48220 1.51410 1.45994 1.06936 1.09358 1.74060 1.20892 0.96034 0.83216 0.95633 0.92238 1.21702 0.93926 0.97052 1.02133 1.21388 1.01920 0.95734 0.94817 1.21737 0.93847 0.88924 0.97373 0.89117 1.60234 1.36676 1.04839 1.29006 1.21562 1.00225 0.92867 0.91976 1.20940 0.82758 0.90970 0.82960 1.90490 1.62189 1.59226 1.39182 1.41929 1.52329 1.11924 1.14809 1.19678 1.36703 0.88811 1.01377 0.90410 1.26025 0.96886 1.03904 0.94305 1.69673 1.43581 1.37533 1.05258 0.84933 0.78611 0.77052 0.77770 1.19553 1.19477 1.19879 1.22196 0.97665 0.97384 1.01040 1.21736 1.00751 0.96133 0.96653 0.93473 0.91661 0.93188 0.91017 0.90350 0.93085 0.93394 0.90423 0.93360 0.89457 0.74645 0.89108 0.89831 0.90702 0.92830 0.84036 0.91945 0.87590 0.76960 0.91286 0.92829 0.92205 0.89986 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.91 71.98 0.71 -0.82 16 2 C -0.12 -1.03 5.69 30.59 0.17 -0.86 16 3 C -0.10 -1.38 4.03 30.59 0.12 -1.26 16 4 C -0.10 -1.11 2.72 -11.54 -0.03 -1.14 16 5 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 6 C -0.14 -0.86 8.84 71.98 0.64 -0.23 16 7 C 0.51 9.17 7.12 87.65 0.62 9.79 16 8 O -0.59 -16.85 15.58 -3.04 -0.05 -16.90 16 9 N -0.71 -9.24 4.97 -442.52 -2.20 -11.44 16 10 C 0.15 2.50 2.46 44.99 0.11 2.61 16 11 H 0.06 1.39 7.58 -2.39 -0.02 1.37 16 12 C -0.11 -1.44 5.39 30.59 0.16 -1.27 16 13 C -0.10 -1.94 5.53 30.59 0.17 -1.77 16 14 C 0.09 2.04 2.47 44.92 0.11 2.15 16 15 H 0.09 1.83 7.80 -2.39 -0.02 1.81 16 16 N -0.68 -21.48 5.87 -495.55 -2.91 -24.39 16 17 C 0.07 2.28 5.97 85.56 0.51 2.79 16 18 C 0.44 21.13 7.82 87.66 0.69 21.82 16 19 O -0.62 -35.37 15.78 -3.07 -0.05 -35.42 16 20 N -0.57 -29.80 5.29 -306.98 -1.62 -31.42 16 21 C -0.34 -19.38 9.68 84.04 0.81 -18.57 16 22 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 23 C -0.01 -0.61 5.50 84.92 0.47 -0.15 16 24 N -0.92 -49.88 13.05 21.66 0.28 -49.60 16 25 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 29 C -0.14 -3.17 5.17 30.59 0.16 -3.01 16 30 C -0.11 -2.14 5.49 30.59 0.17 -1.97 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.08 0.48 6.56 -2.39 -0.02 0.46 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.05 0.87 7.96 -2.39 -0.02 0.85 16 38 H 0.08 0.21 7.56 -2.39 -0.02 0.20 16 39 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.09 0.27 6.56 -2.39 -0.02 0.26 16 41 H 0.42 2.45 8.02 -92.71 -0.74 1.71 16 42 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.34 11.82 8.17 -89.70 -0.73 11.09 16 47 H 0.06 1.93 7.44 -2.38 -0.02 1.92 16 48 H 0.11 3.24 8.06 -2.39 -0.02 3.22 16 49 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 50 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 51 H 0.05 1.33 8.13 -2.39 -0.02 1.31 16 52 H 0.06 1.39 7.45 -2.39 -0.02 1.38 16 53 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 54 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -74.88 425.71 -0.23 -75.11 By element: Atomic # 1 Polarization: 41.88 SS G_CDS: -1.31 Total: 40.57 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 5.60 Total: 8.12 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -6.45 Total: -116.85 kcal Atomic # 8 Polarization: -52.22 SS G_CDS: -0.10 Total: -52.32 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -74.88 -0.23 -75.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732305715.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.078 kcal (2) G-P(sol) polarization free energy of solvation -74.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds