Wall clock time and date at job start Tue Mar 31 2020 23:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47650 * 2 1 4 4 C 1.53004 * 109.46892 * 240.00365 * 2 1 3 5 5 N 1.46903 * 109.47331 * 89.80095 * 4 2 1 6 6 C 1.47007 * 110.99706 * 288.07935 * 5 4 2 7 7 C 1.53104 * 109.25499 * 177.60711 * 6 5 4 8 8 O 1.43012 * 109.26012 * 56.84929 * 7 6 5 9 9 C 1.43019 * 113.73512 * 301.32974 * 8 7 6 10 10 C 1.47006 * 110.99988 * 164.44362 * 5 4 2 11 11 C 1.50694 * 109.47242 * 120.00569 * 2 1 3 12 12 O 1.21279 * 120.00531 * 133.70036 * 11 2 1 13 13 N 1.34779 * 119.99890 * 313.70534 * 11 2 1 14 14 C 1.47432 * 125.64544 * 355.21901 * 13 11 2 15 15 C 1.54913 * 104.82988 * 204.09268 * 14 13 11 16 16 C 1.55156 * 101.58331 * 322.99238 * 15 14 13 17 17 C 1.47315 * 125.61855 * 174.99538 * 13 11 2 18 18 H 1.09007 * 109.84678 * 59.58117 * 17 13 11 19 19 C 1.52992 * 110.06546 * 298.31929 * 17 13 11 20 20 N 1.46504 * 109.47367 * 75.57957 * 19 17 13 21 21 C 1.36933 * 120.00295 * 184.50143 * 20 19 17 22 22 H 1.08000 * 119.99948 * 359.97438 * 21 20 19 23 23 C 1.38809 * 119.99856 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00322 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99920 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47092 * 59.99829 * 25 23 21 27 27 H 1.48500 * 109.47171 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.46979 * 299.99980 * 25 23 21 29 29 H 1.08995 * 109.47281 * 308.65278 * 1 2 3 30 30 H 1.09005 * 109.47423 * 68.64760 * 1 2 3 31 31 H 1.08993 * 109.47580 * 188.64852 * 1 2 3 32 32 H 1.08993 * 109.47566 * 181.02845 * 3 2 1 33 33 H 1.09001 * 109.47451 * 301.04195 * 3 2 1 34 34 H 1.09006 * 109.46787 * 61.02915 * 3 2 1 35 35 H 1.09002 * 109.47080 * 209.80038 * 4 2 1 36 36 H 1.09001 * 109.47552 * 329.79736 * 4 2 1 37 37 H 1.09000 * 109.50811 * 297.54009 * 6 5 4 38 38 H 1.09001 * 109.50828 * 57.67318 * 6 5 4 39 39 H 1.08998 * 109.50473 * 296.90864 * 7 6 5 40 40 H 1.08999 * 109.54026 * 176.80156 * 7 6 5 41 41 H 1.08995 * 109.50506 * 298.73534 * 9 8 7 42 42 H 1.09007 * 109.53774 * 178.62352 * 9 8 7 43 43 H 1.09005 * 109.51130 * 302.32453 * 10 5 4 44 44 H 1.09000 * 109.50945 * 62.45471 * 10 5 4 45 45 H 1.09000 * 110.36630 * 85.25585 * 14 13 11 46 46 H 1.09000 * 110.45534 * 322.97721 * 14 13 11 47 47 H 1.08996 * 111.00380 * 204.91365 * 15 14 13 48 48 H 1.09002 * 111.03307 * 81.08068 * 15 14 13 49 49 H 1.09000 * 110.71916 * 153.86732 * 16 15 14 50 50 H 1.08998 * 110.71497 * 276.96144 * 16 15 14 51 51 H 1.09004 * 109.47640 * 195.57614 * 19 17 13 52 52 H 1.08997 * 109.47210 * 315.57923 * 19 17 13 53 53 H 0.97003 * 119.99943 * 4.49184 * 20 19 17 54 54 H 0.96998 * 120.00181 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.1986 0.2466 -2.3430 6 6 0.8911 0.6845 -2.8528 7 6 1.1017 1.7341 -3.9473 8 8 1.9272 1.1830 -4.9769 9 6 3.2087 0.7467 -4.5154 10 6 3.0194 -0.3129 -3.4267 11 6 2.0323 -0.7105 1.2303 12 8 2.9186 -1.5330 1.1363 13 7 1.4966 -0.4320 2.4353 14 6 0.4896 0.6098 2.7078 15 6 0.6662 0.9490 4.2090 16 6 0.9862 -0.4460 4.8080 17 6 1.8173 -1.1216 3.6969 18 1 2.8804 -1.0189 3.9149 19 6 1.4445 -2.6019 3.5955 20 7 2.4396 -3.3012 2.7787 21 6 2.2651 -4.6240 2.4704 22 1 1.3941 -5.1518 2.8298 23 6 3.2076 -5.2864 1.6961 24 7 4.2688 -4.6429 1.2576 25 14 2.9699 -7.0910 1.2762 26 1 1.7022 -7.2609 0.5216 27 1 4.1079 -7.5600 0.4453 28 1 2.9110 -7.8869 2.5284 29 1 -0.3633 0.6418 0.8025 30 1 -0.3634 0.3742 -0.9571 31 1 -0.3634 -1.0159 0.1545 32 1 3.1299 1.4425 -0.0184 33 1 1.6616 1.9617 -0.8805 34 1 1.6919 1.9509 0.8991 35 1 3.0018 -1.1862 -1.0333 36 1 1.3237 -1.4882 -1.5440 37 1 0.3568 -0.1707 -3.2666 38 1 0.3100 1.1186 -2.0391 39 1 1.5881 2.6116 -3.5213 40 1 0.1378 2.0206 -4.3680 41 1 3.7564 1.5955 -4.1060 42 1 3.7691 0.3185 -5.3466 43 1 3.9921 -0.6069 -3.0320 44 1 2.5192 -1.1840 -3.8496 45 1 -0.5134 0.2260 2.5210 46 1 0.6780 1.4913 2.0949 47 1 -0.2549 1.3528 4.6293 48 1 1.4969 1.6386 4.3591 49 1 1.5717 -0.3480 5.7222 50 1 0.0691 -1.0040 4.9970 51 1 1.4210 -3.0400 4.5933 52 1 0.4622 -2.6984 3.1331 53 1 3.2220 -2.8272 2.4560 54 1 4.9273 -5.1057 0.7162 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733343251.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:42 Heat of formation + Delta-G solvation = -53.865913 kcal Electronic energy + Delta-G solvation = -32743.866401 eV Core-core repulsion = 28716.287003 eV Total energy + Delta-G solvation = -4027.579398 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.75002 -40.51008 -38.70523 -37.49828 -36.27357 -34.97575 -33.20796 -32.30626 -32.02329 -30.36071 -29.14460 -28.28854 -26.79499 -25.85631 -24.89133 -24.82875 -23.86468 -22.20319 -21.48857 -21.13617 -19.72943 -19.00674 -17.70992 -17.50359 -17.29090 -17.02025 -16.71455 -16.40505 -16.21274 -15.96518 -15.75273 -15.29452 -15.24538 -14.96421 -14.83478 -14.75697 -14.33699 -14.17223 -13.87609 -13.78977 -13.51632 -13.21696 -13.17762 -13.06061 -12.86528 -12.83718 -12.61479 -12.49196 -12.33978 -12.31633 -12.23397 -12.12924 -11.95709 -11.83462 -11.60236 -11.48573 -11.45666 -11.28459 -10.92192 -10.65479 -10.23439 -9.48594 -9.42294 -8.83631 -7.83261 -5.11802 1.37397 1.42214 1.48252 1.89944 2.14170 2.55339 2.73107 2.96844 3.43456 3.52429 3.61974 3.73139 3.80514 3.90718 3.94624 4.01428 4.07975 4.12634 4.20359 4.24969 4.29030 4.33942 4.41782 4.43033 4.48426 4.55992 4.61604 4.69390 4.71014 4.76906 4.79112 4.82384 4.83826 4.86671 4.91730 4.97928 5.00658 5.01663 5.05498 5.18290 5.19514 5.20430 5.31505 5.42768 5.45427 5.47151 5.67406 5.81665 5.95400 6.17901 6.33375 6.78941 7.37160 7.55791 8.31817 8.60562 9.37709 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008880 B = 0.004505 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3152.244451 B = 6213.602553 C = 8764.512432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.059 4.059 3 C -0.111 4.111 4 C 0.079 3.921 5 N -0.519 5.519 6 C 0.001 3.999 7 C 0.064 3.936 8 O -0.404 6.404 9 C 0.074 3.926 10 C 0.013 3.987 11 C 0.510 3.490 12 O -0.539 6.539 13 N -0.614 5.614 14 C 0.084 3.916 15 C -0.119 4.119 16 C -0.115 4.115 17 C 0.131 3.869 18 H 0.042 0.958 19 C 0.144 3.856 20 N -0.739 5.739 21 C -0.249 4.249 22 H 0.063 0.937 23 C -0.073 4.073 24 N -0.952 5.952 25 Si 0.966 3.034 26 H -0.283 1.283 27 H -0.295 1.295 28 H -0.275 1.275 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.031 0.969 32 H 0.037 0.963 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.015 0.985 37 H 0.028 0.972 38 H 0.119 0.881 39 H 0.072 0.928 40 H 0.119 0.881 41 H 0.069 0.931 42 H 0.110 0.890 43 H 0.076 0.924 44 H 0.025 0.975 45 H 0.079 0.921 46 H 0.103 0.897 47 H 0.117 0.883 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.085 0.915 51 H 0.022 0.978 52 H 0.008 0.992 53 H 0.390 0.610 54 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.971 22.568 -3.124 25.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.063 4.063 3 C -0.168 4.168 4 C -0.049 4.049 5 N -0.244 5.244 6 C -0.127 4.127 7 C -0.013 4.013 8 O -0.323 6.323 9 C -0.003 4.003 10 C -0.116 4.116 11 C 0.298 3.702 12 O -0.413 6.413 13 N -0.349 5.349 14 C -0.036 4.036 15 C -0.157 4.157 16 C -0.154 4.154 17 C 0.026 3.974 18 H 0.060 0.940 19 C 0.016 3.984 20 N -0.389 5.389 21 C -0.381 4.381 22 H 0.081 0.919 23 C -0.266 4.266 24 N -0.603 5.603 25 Si 0.795 3.205 26 H -0.210 1.210 27 H -0.221 1.221 28 H -0.201 1.201 29 H 0.120 0.880 30 H 0.108 0.892 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.046 0.954 38 H 0.136 0.864 39 H 0.090 0.910 40 H 0.137 0.863 41 H 0.088 0.912 42 H 0.128 0.872 43 H 0.095 0.905 44 H 0.043 0.957 45 H 0.097 0.903 46 H 0.120 0.880 47 H 0.135 0.865 48 H 0.099 0.901 49 H 0.111 0.889 50 H 0.104 0.896 51 H 0.040 0.960 52 H 0.026 0.974 53 H 0.230 0.770 54 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.321 22.366 -3.284 25.283 hybrid contribution 0.447 -2.795 -0.426 2.863 sum -10.873 19.571 -3.710 22.694 Atomic orbital electron populations 1.22488 0.91402 1.02152 1.05264 1.20550 0.97863 0.97823 0.90045 1.21671 1.00516 0.91158 1.03436 1.21820 1.00203 0.92072 0.90816 1.62325 1.15560 1.38160 1.08348 1.23326 0.90668 0.99002 0.99681 1.22871 0.96231 0.94674 0.87517 1.87948 1.27865 1.81149 1.35365 1.22664 0.85181 0.96172 0.96273 1.22835 0.98572 0.97182 0.92994 1.20930 0.82250 0.82321 0.84711 1.90786 1.31409 1.34051 1.85099 1.48554 1.43268 1.36902 1.06215 1.22963 0.91760 0.90809 0.98112 1.22823 1.04241 0.95639 0.93003 1.22610 1.00039 0.96650 0.96075 1.21837 0.98790 0.91303 0.85430 0.93954 1.21185 0.91903 0.91720 0.93592 1.43138 1.26113 1.08454 1.61159 1.19533 1.04428 0.88512 1.25667 0.91896 1.25529 0.97517 1.01937 1.01646 1.69969 1.12754 1.36440 1.41087 0.85332 0.76422 0.80887 0.77821 1.20983 1.22118 1.20088 0.88030 0.89155 0.94957 0.94397 0.88762 0.90805 0.92767 0.96630 0.95410 0.86374 0.90984 0.86272 0.91236 0.87181 0.90533 0.95654 0.90311 0.87963 0.86495 0.90073 0.88902 0.89645 0.96044 0.97366 0.77008 0.94842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 7.39 71.98 0.53 -2.90 16 2 C -0.06 -1.70 0.49 -52.93 -0.03 -1.73 16 3 C -0.11 -2.42 7.59 71.98 0.55 -1.87 16 4 C 0.08 2.73 4.45 86.30 0.38 3.12 16 5 N -0.52 -13.57 3.35 -895.21 -3.00 -16.57 16 6 C 0.00 0.01 4.20 86.32 0.36 0.37 16 7 C 0.06 1.05 7.01 72.02 0.50 1.55 16 8 O -0.40 -8.93 10.83 -148.98 -1.61 -10.54 16 9 C 0.07 1.54 7.01 72.02 0.50 2.04 16 10 C 0.01 0.34 5.62 86.32 0.49 0.82 16 11 C 0.51 19.93 6.32 87.65 0.55 20.48 16 12 O -0.54 -28.72 11.90 -3.03 -0.04 -28.75 16 13 N -0.61 -19.51 3.04 -787.34 -2.40 -21.90 16 14 C 0.08 1.56 4.81 86.85 0.42 1.98 16 15 C -0.12 -1.70 7.09 31.99 0.23 -1.48 16 16 C -0.12 -2.46 6.43 31.78 0.20 -2.25 16 17 C 0.13 4.54 3.04 45.28 0.14 4.67 16 18 H 0.04 1.72 8.13 -2.38 -0.02 1.70 16 19 C 0.14 6.46 5.62 86.38 0.49 6.95 16 20 N -0.74 -43.19 4.51 -343.46 -1.55 -44.73 16 21 C -0.25 -15.69 9.99 84.03 0.84 -14.85 16 22 H 0.06 3.81 7.83 -2.91 -0.02 3.78 16 23 C -0.07 -4.70 5.50 84.86 0.47 -4.23 16 24 N -0.95 -65.22 13.06 21.65 0.28 -64.94 16 25 Si 0.97 50.75 29.55 68.60 2.03 52.78 16 26 H -0.28 -14.41 7.11 99.48 0.71 -13.70 16 27 H -0.29 -15.47 7.11 99.48 0.71 -14.76 16 28 H -0.27 -13.70 7.11 99.48 0.71 -12.99 16 29 H 0.10 1.59 4.37 -2.39 -0.01 1.58 16 30 H 0.09 1.55 4.70 -2.38 -0.01 1.54 16 31 H 0.03 0.90 8.12 -2.39 -0.02 0.88 16 32 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 33 H 0.09 1.64 5.72 -2.39 -0.01 1.63 16 34 H 0.07 1.24 5.45 -2.38 -0.01 1.23 16 35 H 0.05 2.42 6.58 -2.39 -0.02 2.40 16 36 H 0.02 0.59 7.75 -2.39 -0.02 0.57 16 37 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.12 1.84 3.96 -2.39 -0.01 1.83 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 40 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 43 H 0.08 2.22 8.04 -2.38 -0.02 2.20 16 44 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.08 1.30 7.08 -2.39 -0.02 1.28 16 46 H 0.10 1.42 4.56 -2.39 -0.01 1.41 16 47 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.08 1.70 7.85 -2.39 -0.02 1.68 16 51 H 0.02 0.95 8.09 -2.39 -0.02 0.93 16 52 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 53 H 0.39 24.79 4.85 -92.71 -0.45 24.34 16 54 H 0.24 16.14 8.31 -92.71 -0.77 15.37 16 Total: -1.00 -87.88 391.07 0.80 -87.09 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: 0.45 Total: 34.90 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 6.63 Total: 12.68 kcal Atomic # 7 Polarization: -141.49 SS G_CDS: -6.66 Total: -148.15 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -1.65 Total: -39.30 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 2.03 Total: 52.78 kcal Total: -87.88 0.80 -87.09 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733343251.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.220 kcal (2) G-P(sol) polarization free energy of solvation -87.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds