Wall clock time and date at job start Tue Mar 31 2020 22:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52988 * 109.47569 * 2 1 4 4 C 1.53007 * 109.47268 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46882 * 54.99776 * 4 3 2 6 6 C 1.53005 * 109.46553 * 294.99783 * 4 3 2 7 7 C 1.52999 * 109.47340 * 175.00157 * 4 3 2 8 8 C 1.50699 * 109.47204 * 184.99722 * 7 4 3 9 9 O 1.21279 * 119.99997 * 359.97438 * 8 7 4 10 10 N 1.34777 * 120.00179 * 179.97438 * 8 7 4 11 11 C 1.46497 * 120.00376 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46725 * 35.00314 * 11 10 8 13 13 C 1.52997 * 109.47188 * 275.00479 * 11 10 8 14 14 C 1.52992 * 109.47081 * 155.00022 * 11 10 8 15 15 C 1.53940 * 113.73755 * 278.76602 * 14 11 10 16 16 N 1.48187 * 86.10134 * 221.95864 * 15 14 11 17 17 C 1.46909 * 111.06717 * 137.52429 * 16 15 14 18 18 C 1.50693 * 109.47055 * 90.56219 * 17 16 15 19 19 O 1.21292 * 120.00669 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99770 * 179.97438 * 18 17 16 21 21 C 1.37092 * 120.00058 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00142 * 0.02562 * 21 20 18 23 23 C 1.38955 * 120.00028 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99855 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00060 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46646 * 90.00212 * 25 23 21 27 27 H 1.48500 * 109.47157 * 210.00151 * 25 23 21 28 28 H 1.48491 * 109.47140 * 330.00526 * 25 23 21 29 29 C 1.47951 * 90.79933 * 24.60178 * 16 15 14 30 30 H 1.08999 * 109.46580 * 59.99882 * 1 2 3 31 31 H 1.08996 * 109.47264 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46619 * 300.00426 * 1 2 3 33 33 H 1.09000 * 109.46619 * 239.99574 * 2 1 3 34 34 H 1.09000 * 109.46736 * 120.00649 * 2 1 3 35 35 H 1.09000 * 109.47498 * 60.00112 * 3 2 1 36 36 H 1.08999 * 109.47266 * 299.99698 * 3 2 1 37 37 H 1.09000 * 109.46482 * 180.02562 * 6 4 3 38 38 H 1.08993 * 109.47052 * 299.99446 * 6 4 3 39 39 H 1.09001 * 109.47189 * 60.00313 * 6 4 3 40 40 H 1.08995 * 109.47484 * 64.99375 * 7 4 3 41 41 H 1.09009 * 109.47204 * 304.99897 * 7 4 3 42 42 H 0.97006 * 119.99702 * 0.02562 * 10 8 7 43 43 H 1.09002 * 109.47153 * 299.99573 * 13 11 10 44 44 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 45 45 H 1.09004 * 109.47261 * 59.99745 * 13 11 10 46 46 H 1.08997 * 112.94423 * 50.33745 * 14 11 10 47 47 H 1.09002 * 113.75640 * 336.24285 * 15 14 11 48 48 H 1.09003 * 113.75405 * 107.60436 * 15 14 11 49 49 H 1.08994 * 109.47018 * 210.56817 * 17 16 15 50 50 H 1.09000 * 109.46792 * 330.56144 * 17 16 15 51 51 H 0.97001 * 120.00239 * 0.02562 * 20 18 17 52 52 H 0.97003 * 119.99718 * 179.97438 * 24 23 21 53 53 H 1.09004 * 113.75858 * 221.08298 * 29 16 15 54 54 H 1.09001 * 113.76044 * 89.72283 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4423 0.0000 4 6 3.5702 1.4423 -0.0006 5 1 3.9331 0.8529 -0.8427 6 6 4.0806 0.8324 1.3065 7 6 4.0803 2.8792 -0.1263 8 6 5.5821 2.8701 -0.2504 9 8 6.1851 1.8180 -0.2389 10 7 6.2551 4.0313 -0.3741 11 6 7.7151 4.0225 -0.4942 12 1 8.0278 3.1456 -1.0611 13 6 8.3413 3.9778 0.9011 14 6 8.1748 5.2889 -1.2192 15 6 8.0524 5.2048 -2.7514 16 7 9.3773 5.8673 -2.7924 17 6 10.2448 5.2510 -3.8053 18 6 10.0646 5.9629 -5.1212 19 8 9.2902 6.8925 -5.2069 20 7 10.7648 5.5672 -6.2027 21 6 10.6014 6.2151 -7.3998 22 1 9.9119 7.0428 -7.4761 23 6 11.3228 5.8069 -8.5150 24 7 12.1615 4.7994 -8.4223 25 14 11.0996 6.6893 -10.1463 26 1 12.0682 7.8112 -10.2387 27 1 11.3372 5.7371 -11.2607 28 1 9.7161 7.2212 -10.2360 29 6 9.6966 5.3585 -1.4403 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6769 1.9563 0.8900 36 1 1.6769 1.9562 -0.8900 37 1 5.1706 0.8328 1.3062 38 1 3.7177 1.4218 2.1484 39 1 3.7172 -0.1913 1.3961 40 1 3.7923 3.4458 0.7591 41 1 3.6453 3.3431 -1.0117 42 1 5.7728 4.8729 -0.3829 43 1 8.0287 4.8547 1.4679 44 1 9.4277 3.9708 0.8116 45 1 8.0138 3.0755 1.4176 46 1 7.7512 6.1990 -0.7946 47 1 8.0590 4.1853 -3.1371 48 1 7.2443 5.8107 -3.1612 49 1 11.2849 5.3293 -3.4891 50 1 9.9784 4.2004 -3.9210 51 1 11.3844 4.8240 -6.1342 52 1 12.6648 4.5142 -9.2009 53 1 10.1999 6.0869 -0.8045 54 1 10.1852 4.3841 -1.4418 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734111521.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:25 Heat of formation + Delta-G solvation = -92.795451 kcal Electronic energy + Delta-G solvation = -29316.814048 eV Core-core repulsion = 25287.546539 eV Total energy + Delta-G solvation = -4029.267509 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.56922 -40.66827 -39.60120 -37.74464 -36.26996 -35.88339 -33.63110 -33.32016 -32.52053 -30.69100 -28.66308 -27.56590 -27.43216 -26.88673 -25.59706 -23.60227 -22.46062 -21.46933 -21.00846 -20.90993 -20.34727 -19.89008 -18.01493 -17.79541 -17.53833 -16.64302 -16.62792 -16.49259 -16.20024 -16.08721 -15.79992 -15.50019 -15.07192 -14.98457 -14.82124 -14.36464 -14.25832 -14.12832 -13.97848 -13.68843 -13.53527 -13.45789 -13.15134 -12.99211 -12.82231 -12.69864 -12.67439 -12.56399 -12.43818 -12.33806 -12.14319 -11.83624 -11.82345 -11.76350 -11.66563 -11.61615 -11.50863 -11.47180 -11.26672 -10.59240 -10.38872 -10.05907 -10.02454 -9.61006 -8.47812 -5.96892 1.36798 1.39961 1.53110 1.74401 2.04237 2.23786 2.27968 2.77339 3.18107 3.31067 3.46241 3.64274 3.80940 3.82371 3.99073 4.12701 4.17465 4.22369 4.26698 4.29431 4.34463 4.42879 4.45321 4.47303 4.50974 4.53075 4.60769 4.73727 4.76196 4.76266 4.80867 4.83173 4.84261 4.95160 4.99888 5.01289 5.07052 5.19040 5.22525 5.27356 5.30572 5.34974 5.38893 5.42724 5.44002 5.53979 5.58384 5.65961 5.89136 6.07835 6.59288 6.65242 7.11601 7.37254 7.54997 8.11353 8.69667 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012844 B = 0.001852 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.475659 B =15116.549987 C =16583.264233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.109 4.109 4 C -0.075 4.075 5 H 0.052 0.948 6 C -0.149 4.149 7 C -0.133 4.133 8 C 0.508 3.492 9 O -0.580 6.580 10 N -0.717 5.717 11 C 0.156 3.844 12 H 0.063 0.937 13 C -0.153 4.153 14 C -0.097 4.097 15 C 0.011 3.989 16 N -0.483 5.483 17 C 0.023 3.977 18 C 0.441 3.559 19 O -0.618 6.618 20 N -0.576 5.576 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.273 1.273 29 C 0.015 3.985 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.414 0.586 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.044 0.956 46 H 0.120 0.880 47 H 0.061 0.939 48 H 0.072 0.928 49 H 0.108 0.892 50 H 0.073 0.927 51 H 0.395 0.605 52 H 0.278 0.722 53 H 0.108 0.892 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.908 -6.841 23.287 29.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.146 4.146 4 C -0.094 4.094 5 H 0.070 0.930 6 C -0.206 4.206 7 C -0.173 4.173 8 C 0.296 3.704 9 O -0.460 6.460 10 N -0.369 5.369 11 C 0.050 3.950 12 H 0.081 0.919 13 C -0.211 4.211 14 C -0.116 4.116 15 C -0.118 4.118 16 N -0.205 5.205 17 C -0.108 4.108 18 C 0.229 3.771 19 O -0.504 6.504 20 N -0.214 5.214 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.818 3.182 26 H -0.195 1.195 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.113 4.113 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.136 0.864 41 H 0.127 0.873 42 H 0.251 0.749 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.063 0.937 46 H 0.138 0.862 47 H 0.079 0.921 48 H 0.091 0.909 49 H 0.126 0.874 50 H 0.091 0.909 51 H 0.229 0.771 52 H 0.087 0.913 53 H 0.126 0.874 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.800 -6.354 22.933 29.130 hybrid contribution 0.432 -0.691 -1.195 1.447 sum -16.368 -7.045 21.737 28.108 Atomic orbital electron populations 1.21769 0.95281 1.01764 1.02060 1.21583 0.96243 0.97074 1.01735 1.21630 0.93181 0.97023 1.02799 1.20866 0.95615 0.94425 0.98530 0.92954 1.21923 1.01251 1.00689 0.96718 1.21814 0.89695 0.99647 1.06098 1.21273 0.91351 0.83152 0.74620 1.90664 1.71479 1.32386 1.51425 1.46060 1.07268 1.09453 1.74145 1.20858 0.80324 0.96842 0.96945 0.91900 1.22063 1.01571 1.02134 0.95378 1.23121 0.96389 0.98850 0.93226 1.24015 0.93539 0.97411 0.96849 1.68374 1.02711 1.47707 1.01727 1.22344 1.00618 0.96727 0.91156 1.20809 0.83508 0.86524 0.86280 1.90473 1.41093 1.32965 1.85839 1.41966 1.39050 1.31920 1.08482 1.19665 1.24341 1.14973 0.87436 0.90413 1.26063 0.95344 0.97252 1.02699 1.69679 1.26613 1.27183 1.32733 0.84914 0.78639 0.77968 0.76724 1.19519 1.19470 1.19802 1.24069 0.96102 1.00850 0.90313 0.92695 0.92777 0.92200 0.93034 0.91916 0.90690 0.91434 0.93369 0.92106 0.92779 0.86442 0.87277 0.74936 0.90767 0.90592 0.93684 0.86176 0.92087 0.90906 0.87413 0.90890 0.77116 0.91306 0.87393 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 71.98 0.71 -0.80 16 2 C -0.13 -1.54 5.69 30.59 0.17 -1.36 16 3 C -0.11 -1.18 4.68 30.59 0.14 -1.04 16 4 C -0.08 -1.12 2.04 -10.79 -0.02 -1.14 16 5 H 0.05 1.05 7.96 -2.39 -0.02 1.03 16 6 C -0.15 -2.40 8.69 71.98 0.63 -1.77 16 7 C -0.13 -1.60 5.17 29.85 0.15 -1.45 16 8 C 0.51 9.63 7.51 87.66 0.66 10.29 16 9 O -0.58 -16.02 13.63 -3.03 -0.04 -16.06 16 10 N -0.72 -10.99 5.08 -442.56 -2.25 -13.24 16 11 C 0.16 2.77 2.38 44.99 0.11 2.88 16 12 H 0.06 1.48 7.42 -2.39 -0.02 1.46 16 13 C -0.15 -2.31 9.31 71.98 0.67 -1.64 16 14 C -0.10 -1.82 3.46 -10.15 -0.04 -1.86 16 15 C 0.01 0.30 7.53 86.37 0.65 0.95 16 16 N -0.48 -15.44 5.65 -911.68 -5.15 -20.59 16 17 C 0.02 0.83 5.28 85.55 0.45 1.29 16 18 C 0.44 21.91 7.83 87.65 0.69 22.59 16 19 O -0.62 -35.63 16.01 -3.07 -0.05 -35.68 16 20 N -0.58 -30.62 5.29 -306.99 -1.62 -32.24 16 21 C -0.33 -19.52 9.68 84.04 0.81 -18.71 16 22 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 23 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 24 N -0.92 -50.67 13.05 21.66 0.28 -50.39 16 25 Si 0.99 43.70 29.55 68.60 2.03 45.73 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 29 C 0.02 0.32 6.65 86.41 0.57 0.90 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.76 6.57 -2.39 -0.02 0.75 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.05 1.05 5.95 -2.39 -0.01 1.03 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.05 0.84 6.57 -2.39 -0.02 0.82 16 40 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.11 1.00 8.14 -2.38 -0.02 0.99 16 42 H 0.41 4.06 8.60 -92.70 -0.80 3.26 16 43 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.08 1.02 7.52 -2.39 -0.02 1.00 16 45 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 46 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.06 1.77 7.33 -2.39 -0.02 1.76 16 48 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 49 H 0.11 3.39 8.08 -2.39 -0.02 3.37 16 50 H 0.07 2.37 7.39 -2.39 -0.02 2.35 16 51 H 0.40 19.93 7.90 -92.71 -0.73 19.20 16 52 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 53 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 54 H 0.08 1.56 7.88 -2.39 -0.02 1.54 16 Total: -1.00 -75.93 429.49 -0.61 -76.54 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: -0.65 Total: 37.08 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 6.83 Total: 8.85 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -8.74 Total: -116.46 kcal Atomic # 8 Polarization: -51.65 SS G_CDS: -0.09 Total: -51.74 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -75.93 -0.61 -76.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734111521.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.251 kcal (2) G-P(sol) polarization free energy of solvation -75.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds