Wall clock time and date at job start Tue Mar 31 2020 22:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46879 * 2 1 4 4 C 1.53001 * 109.46897 * 184.61262 * 3 2 1 5 5 H 1.09006 * 109.46931 * 54.83047 * 4 3 2 6 6 C 1.53001 * 109.47063 * 294.83153 * 4 3 2 7 7 C 1.53003 * 109.47112 * 296.93084 * 6 4 3 8 8 C 1.50695 * 109.47093 * 174.82895 * 4 3 2 9 9 O 1.21287 * 120.00226 * 23.09802 * 8 4 3 10 10 N 1.34779 * 119.99954 * 203.09522 * 8 4 3 11 11 C 1.46494 * 120.00115 * 4.86411 * 10 8 4 12 12 C 1.46504 * 119.99639 * 184.86958 * 10 8 4 13 13 C 1.53787 * 113.60898 * 214.44983 * 12 10 8 14 14 C 1.54055 * 86.98350 * 270.83926 * 13 12 10 15 15 N 1.46900 * 113.69196 * 220.01114 * 14 13 12 16 16 C 1.46892 * 111.00065 * 252.53359 * 15 14 13 17 17 C 1.50704 * 109.47194 * 180.02562 * 16 15 14 18 18 O 1.21291 * 119.99734 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99890 * 179.97438 * 17 16 15 20 20 C 1.37105 * 120.00066 * 180.02562 * 19 17 16 21 21 H 1.07997 * 119.99537 * 359.97438 * 20 19 17 22 22 C 1.38941 * 120.00170 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00081 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99928 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47365 * 60.00013 * 24 22 20 26 26 H 1.48510 * 109.47263 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47376 * 299.99820 * 24 22 20 28 28 C 1.53778 * 87.07896 * 334.56794 * 14 13 12 29 29 H 1.09006 * 109.47060 * 60.00264 * 1 2 3 30 30 H 1.09000 * 109.47254 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47568 * 300.00260 * 1 2 3 32 32 H 1.08991 * 109.47113 * 239.99486 * 2 1 3 33 33 H 1.08997 * 109.46667 * 119.99300 * 2 1 3 34 34 H 1.08994 * 109.47184 * 64.61100 * 3 2 1 35 35 H 1.09000 * 109.47032 * 304.60944 * 3 2 1 36 36 H 1.08998 * 109.47075 * 176.92661 * 6 4 3 37 37 H 1.09002 * 109.46884 * 56.92742 * 6 4 3 38 38 H 1.09001 * 109.46849 * 182.62196 * 7 6 4 39 39 H 1.08996 * 109.47252 * 62.61097 * 7 6 4 40 40 H 1.09007 * 109.46599 * 302.61862 * 7 6 4 41 41 H 1.09004 * 109.47138 * 28.65499 * 11 10 8 42 42 H 1.09000 * 109.46903 * 148.65374 * 11 10 8 43 43 H 1.08994 * 109.47682 * 268.65501 * 11 10 8 44 44 H 1.09000 * 112.85353 * 345.64361 * 12 10 8 45 45 H 1.08997 * 113.61744 * 25.43254 * 13 12 10 46 46 H 1.09001 * 113.61313 * 156.33504 * 13 12 10 47 47 H 1.08991 * 113.61366 * 89.12192 * 14 13 12 48 48 H 1.00907 * 111.00224 * 128.57738 * 15 14 13 49 49 H 1.09004 * 109.46994 * 299.99960 * 16 15 14 50 50 H 1.09004 * 109.47476 * 60.00097 * 16 15 14 51 51 H 0.97001 * 120.00207 * 359.97438 * 19 17 16 52 52 H 0.97004 * 119.99960 * 179.97438 * 23 22 20 53 53 H 1.08998 * 113.61652 * 270.88689 * 28 14 13 54 54 H 1.08999 * 113.61298 * 139.97608 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5656 1.4441 -0.1160 5 1 3.8636 0.8752 -0.9968 6 6 4.1728 0.8039 1.1340 7 6 3.8180 1.6455 2.3616 8 6 4.0582 2.8625 -0.2438 9 8 3.3774 3.7799 0.1635 10 7 5.2553 3.1116 -0.8107 11 6 6.0298 2.0158 -1.3984 12 6 5.7820 4.4784 -0.8391 13 6 6.5961 4.7986 -2.1040 14 6 7.8309 4.2816 -1.3415 15 7 9.0435 5.0780 -1.5727 16 6 9.9971 4.3508 -2.4210 17 6 11.2257 5.1969 -2.6351 18 8 11.2993 6.2976 -2.1310 19 7 12.2425 4.7304 -3.3868 20 6 13.3604 5.5000 -3.5811 21 1 13.4260 6.4800 -3.1323 22 6 14.4089 5.0189 -4.3556 23 7 14.3293 3.8261 -4.9014 24 14 15.9318 6.0677 -4.6210 25 1 16.5618 6.3663 -3.3099 26 1 16.8961 5.3323 -5.4781 27 1 15.5479 7.3385 -5.2866 28 6 7.0885 4.6517 -0.0466 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.7457 1.9319 0.9284 35 1 1.6108 1.9796 -0.8458 36 1 5.2564 0.7555 1.0275 37 1 3.7743 -0.2032 1.2565 38 1 4.2891 1.2154 3.2454 39 1 2.7362 1.6556 2.4949 40 1 4.1759 2.6652 2.2187 41 1 5.3509 1.2382 -1.7487 42 1 6.6141 2.3931 -2.2376 43 1 6.7005 1.6006 -0.6462 44 1 5.0264 5.2283 -0.6048 45 1 6.3248 4.1869 -2.9643 46 1 6.6406 5.8625 -2.3369 47 1 7.9991 3.2111 -1.4577 48 1 9.4701 5.3490 -0.6993 49 1 10.2794 3.4178 -1.9330 50 1 9.5340 4.1320 -3.3832 51 1 12.1837 3.8500 -3.7896 52 1 15.0611 3.4904 -5.4423 53 1 7.2673 5.6755 0.2818 54 1 7.2144 3.9215 0.7528 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734597502.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:15 Heat of formation + Delta-G solvation = -83.552250 kcal Electronic energy + Delta-G solvation = -29883.329136 eV Core-core repulsion = 25854.462442 eV Total energy + Delta-G solvation = -4028.866694 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.81090 -40.29738 -39.69662 -37.23358 -36.25706 -35.75234 -34.22771 -33.51766 -33.19555 -29.85010 -28.73292 -28.05391 -26.74566 -26.34168 -25.76963 -24.26329 -23.17464 -21.86867 -21.12745 -20.28037 -19.88238 -19.39142 -18.32685 -17.67565 -17.20245 -16.93139 -16.73571 -16.52112 -16.37542 -16.06594 -15.68372 -15.56482 -15.17990 -14.88526 -14.75241 -14.41445 -14.14971 -14.02882 -13.80104 -13.65827 -13.51230 -13.39913 -13.23989 -13.01059 -12.97198 -12.88183 -12.85411 -12.71273 -12.44444 -12.39945 -12.13707 -12.11687 -11.85535 -11.84075 -11.65514 -11.52083 -11.49531 -11.35048 -11.21801 -10.56755 -10.31649 -10.00802 -9.62968 -9.29141 -8.46064 -5.94730 1.40249 1.42408 1.52992 1.61939 1.94814 2.06478 2.29855 2.96755 3.21388 3.41903 3.49386 3.60159 3.67781 3.76296 3.87654 3.93654 4.06945 4.12569 4.28255 4.28907 4.30202 4.39051 4.41305 4.48872 4.56062 4.57919 4.60441 4.69956 4.72700 4.79643 4.82294 4.85523 4.88682 4.93394 4.94563 4.99293 5.03835 5.10607 5.15799 5.19058 5.21239 5.26937 5.39618 5.41373 5.43780 5.56279 5.63460 5.94135 6.17496 6.40515 6.41860 6.61266 7.13415 7.19186 7.57293 8.12996 8.70912 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.027558 B = 0.001716 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.779999 B =16310.962033 C =16683.606004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.101 4.101 4 C -0.103 4.103 5 H 0.118 0.882 6 C -0.108 4.108 7 C -0.156 4.156 8 C 0.516 3.484 9 O -0.582 6.582 10 N -0.595 5.595 11 C 0.057 3.943 12 C 0.121 3.879 13 C -0.128 4.128 14 C 0.059 3.941 15 N -0.672 5.672 16 C 0.066 3.934 17 C 0.436 3.564 18 O -0.625 6.625 19 N -0.572 5.572 20 C -0.337 4.337 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.274 1.274 28 C -0.144 4.144 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.029 0.971 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.098 0.902 48 H 0.345 0.655 49 H 0.070 0.930 50 H 0.104 0.896 51 H 0.397 0.603 52 H 0.278 0.722 53 H 0.091 0.909 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.665 -15.143 8.690 29.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.139 4.139 4 C -0.124 4.124 5 H 0.136 0.864 6 C -0.145 4.145 7 C -0.213 4.213 8 C 0.307 3.693 9 O -0.462 6.462 10 N -0.327 5.327 11 C -0.085 4.085 12 C 0.015 3.985 13 C -0.167 4.167 14 C -0.050 4.050 15 N -0.304 5.304 16 C -0.066 4.066 17 C 0.223 3.777 18 O -0.512 6.512 19 N -0.210 5.210 20 C -0.466 4.466 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.559 5.559 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.183 4.183 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.048 0.952 41 H 0.116 0.884 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.106 0.894 47 H 0.116 0.884 48 H 0.164 0.836 49 H 0.087 0.913 50 H 0.122 0.878 51 H 0.231 0.769 52 H 0.087 0.913 53 H 0.109 0.891 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.086 -13.706 8.579 29.010 hybrid contribution 1.248 0.000 0.172 1.260 sum -22.838 -13.706 8.751 28.036 Atomic orbital electron populations 1.21785 0.95931 1.02026 1.01493 1.21553 0.95849 0.95093 1.03105 1.21456 0.92505 0.97958 1.02003 1.21536 0.97373 0.91379 1.02131 0.86430 1.21498 1.01171 1.00052 0.91795 1.21840 1.01805 0.99113 0.98555 1.21285 0.80019 0.92314 0.75726 1.90666 1.56906 1.48217 1.50421 1.47663 1.19339 1.07950 1.57713 1.22322 0.97344 0.89336 0.99494 1.21645 0.94741 0.84472 0.97598 1.23436 0.94109 1.02600 0.96602 1.23461 0.88627 0.96683 0.96222 1.60184 1.06723 1.42396 1.21139 1.21593 0.90455 0.94389 1.00164 1.20960 0.85876 0.88362 0.82460 1.90494 1.82327 1.23921 1.54463 1.41920 1.15305 1.18397 1.45333 1.19628 0.95210 1.00908 1.30865 0.90461 1.26001 1.01736 0.97623 0.95719 1.69658 1.34755 1.17841 1.33673 0.85012 0.77134 0.77911 0.78411 1.19736 1.19400 1.19886 1.23551 0.95223 1.02819 0.96701 0.93217 0.91738 0.93280 0.90784 0.90704 0.92356 0.93232 0.90727 0.88252 0.91689 0.92505 0.95184 0.88415 0.89796 0.91038 0.89475 0.90113 0.89374 0.88449 0.83561 0.91251 0.87845 0.76896 0.91280 0.89091 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 71.98 0.71 -0.77 16 2 C -0.12 -1.05 5.58 30.60 0.17 -0.88 16 3 C -0.10 -1.41 3.94 30.59 0.12 -1.29 16 4 C -0.10 -1.30 1.84 -11.54 -0.02 -1.32 16 5 H 0.12 0.89 6.06 -2.38 -0.01 0.88 16 6 C -0.11 -1.09 5.52 30.60 0.17 -0.92 16 7 C -0.16 -2.29 9.28 71.98 0.67 -1.63 16 8 C 0.52 10.43 5.60 87.66 0.49 10.92 16 9 O -0.58 -16.87 15.09 -3.05 -0.05 -16.91 16 10 N -0.60 -10.38 3.08 -819.63 -2.52 -12.90 16 11 C 0.06 0.59 8.27 127.77 1.06 1.65 16 12 C 0.12 2.54 4.44 45.52 0.20 2.74 16 13 C -0.13 -2.71 7.11 31.22 0.22 -2.49 16 14 C 0.06 1.27 3.49 45.53 0.16 1.43 16 15 N -0.67 -20.28 6.19 -492.39 -3.05 -23.32 16 16 C 0.07 2.16 6.01 85.56 0.51 2.67 16 17 C 0.44 20.44 7.82 87.66 0.69 21.12 16 18 O -0.63 -34.65 15.78 -3.06 -0.05 -34.70 16 19 N -0.57 -28.97 5.29 -306.98 -1.62 -30.59 16 20 C -0.34 -19.04 9.68 84.04 0.81 -18.23 16 21 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 22 C -0.01 -0.57 5.50 84.92 0.47 -0.11 16 23 N -0.92 -48.85 13.05 21.66 0.28 -48.57 16 24 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 28 C -0.14 -2.98 7.36 31.12 0.23 -2.75 16 29 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.53 6.73 -2.39 -0.02 0.52 16 34 H 0.06 1.03 6.22 -2.39 -0.01 1.01 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.67 7.76 -2.39 -0.02 0.65 16 37 H 0.10 0.62 6.53 -2.39 -0.02 0.60 16 38 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.06 0.86 6.53 -2.39 -0.02 0.85 16 40 H 0.03 0.61 6.67 -2.38 -0.02 0.59 16 41 H 0.10 0.57 5.90 -2.38 -0.01 0.56 16 42 H 0.08 0.90 5.00 -2.39 -0.01 0.88 16 43 H 0.07 0.61 7.95 -2.39 -0.02 0.59 16 44 H 0.09 2.23 7.25 -2.39 -0.02 2.21 16 45 H 0.08 1.51 7.14 -2.39 -0.02 1.49 16 46 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.10 1.70 5.42 -2.39 -0.01 1.68 16 48 H 0.34 11.14 8.25 -89.69 -0.74 10.40 16 49 H 0.07 1.91 8.13 -2.39 -0.02 1.89 16 50 H 0.10 3.02 8.14 -2.38 -0.02 3.00 16 51 H 0.40 18.89 7.90 -92.71 -0.73 18.16 16 52 H 0.28 13.86 8.31 -92.71 -0.77 13.08 16 53 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 54 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -72.49 417.02 1.12 -71.37 By element: Atomic # 1 Polarization: 41.35 SS G_CDS: -0.56 Total: 40.79 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 6.66 Total: 10.16 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -6.91 Total: -115.38 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -0.09 Total: -51.61 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -72.49 1.12 -71.37 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734597502.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.183 kcal (2) G-P(sol) polarization free energy of solvation -72.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds