Wall clock time and date at job start Tue Mar 31 2020 22:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47271 * 2 1 4 4 C 1.53005 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47322 * 305.00154 * 4 3 2 6 6 C 1.52999 * 109.46959 * 64.99872 * 4 3 2 7 7 C 1.52998 * 109.47212 * 185.54209 * 6 4 3 8 8 C 1.50704 * 109.46825 * 184.99940 * 4 3 2 9 9 O 1.21278 * 119.99482 * 275.74358 * 8 4 3 10 10 N 1.34771 * 119.99582 * 95.74842 * 8 4 3 11 11 C 1.46491 * 120.00467 * 5.32722 * 10 8 4 12 12 C 1.46508 * 119.99309 * 185.33226 * 10 8 4 13 13 C 1.53774 * 113.61530 * 118.82902 * 12 10 8 14 14 C 1.53775 * 87.08217 * 140.06009 * 13 12 10 15 15 N 1.46901 * 113.61635 * 219.93258 * 14 13 12 16 16 C 1.46903 * 111.00256 * 203.47437 * 15 14 13 17 17 C 1.50697 * 109.47193 * 180.02562 * 16 15 14 18 18 O 1.21296 * 119.99881 * 359.97438 * 17 16 15 19 19 N 1.34780 * 120.00132 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99950 * 179.97438 * 19 17 16 21 21 H 1.07996 * 119.99948 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99798 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00009 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00069 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47057 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47220 * 119.99704 * 24 22 20 27 27 H 1.48495 * 109.47060 * 240.00351 * 24 22 20 28 28 C 1.53778 * 87.08203 * 334.56489 * 14 13 12 29 29 H 1.08997 * 109.46914 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47276 * 300.00265 * 1 2 3 31 31 H 1.09003 * 109.46634 * 60.00006 * 1 2 3 32 32 H 1.08997 * 109.46997 * 239.99264 * 2 1 3 33 33 H 1.09003 * 109.46634 * 119.99994 * 2 1 3 34 34 H 1.08998 * 109.47187 * 59.99680 * 3 2 1 35 35 H 1.08998 * 109.46859 * 299.99794 * 3 2 1 36 36 H 1.09001 * 109.47227 * 305.54756 * 6 4 3 37 37 H 1.09009 * 109.46913 * 65.54119 * 6 4 3 38 38 H 1.08995 * 109.47069 * 183.14980 * 7 6 4 39 39 H 1.09003 * 109.46822 * 303.14756 * 7 6 4 40 40 H 1.09002 * 109.47282 * 63.14225 * 7 6 4 41 41 H 1.09003 * 109.46975 * 204.75028 * 11 10 8 42 42 H 1.09005 * 109.47181 * 324.74983 * 11 10 8 43 43 H 1.08999 * 109.47341 * 84.75466 * 11 10 8 44 44 H 1.09001 * 112.85251 * 347.62393 * 12 10 8 45 45 H 1.09001 * 113.62019 * 25.51240 * 13 12 10 46 46 H 1.09009 * 113.61183 * 254.60813 * 13 12 10 47 47 H 1.09001 * 113.61714 * 89.11530 * 14 13 12 48 48 H 1.00894 * 111.00141 * 79.51578 * 15 14 13 49 49 H 1.09008 * 109.46604 * 299.99522 * 16 15 14 50 50 H 1.08994 * 109.47302 * 59.99766 * 16 15 14 51 51 H 0.96999 * 119.99473 * 359.97438 * 19 17 16 52 52 H 0.96999 * 120.00182 * 180.02562 * 23 22 20 53 53 H 1.09003 * 113.61528 * 139.98196 * 28 14 13 54 54 H 1.08998 * 113.61381 * 270.88409 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9331 0.8531 0.8426 6 6 4.0806 0.8325 -1.3064 7 6 5.6042 0.7052 -1.2489 8 6 4.0724 2.8579 0.1245 9 8 4.1759 3.5531 -0.8638 10 7 4.4067 3.3508 1.3334 11 6 4.3937 2.4778 2.5097 12 6 4.7831 4.7600 1.4712 13 6 3.8545 5.5575 2.4020 14 6 5.1169 6.2576 2.9322 15 7 5.1028 6.4754 4.3849 16 6 5.9921 7.5830 4.7598 17 6 5.9520 7.7757 6.2538 18 8 5.2511 7.0611 6.9389 19 7 6.6948 8.7422 6.8289 20 6 6.6579 8.9179 8.1881 21 1 6.0332 8.2821 8.7979 22 6 7.4242 9.9139 8.7809 23 7 8.1846 10.6872 8.0388 24 14 7.3733 10.1538 10.6327 25 1 6.4458 9.1627 11.2350 26 1 8.7348 9.9632 11.1941 27 1 6.8983 11.5265 10.9411 28 6 5.8971 5.0039 2.5029 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6768 1.9563 -0.8900 36 1 3.6384 -0.1542 -1.4440 37 1 3.8009 1.4756 -2.1410 38 1 5.9730 0.3230 -2.2008 39 1 6.0435 1.6839 -1.0556 40 1 5.8815 0.0182 -0.4494 41 1 4.2510 3.0796 3.4072 42 1 3.5784 1.7598 2.4202 43 1 5.3419 1.9444 2.5768 44 1 4.9623 5.2460 0.5121 45 1 3.3506 4.9425 3.1476 46 1 3.1745 6.2252 1.8729 47 1 5.3872 7.1531 2.3725 48 1 5.3485 5.6311 4.8795 49 1 7.0114 7.3509 4.4510 50 1 5.6621 8.4970 4.2662 51 1 7.2556 9.3134 6.2810 52 1 8.7199 11.3822 8.4527 53 1 6.8661 5.2247 2.0553 54 1 5.9516 4.2375 3.2761 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734597507.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:19 Heat of formation + Delta-G solvation = -92.427008 kcal Electronic energy + Delta-G solvation = -29622.456810 eV Core-core repulsion = 25593.205278 eV Total energy + Delta-G solvation = -4029.251532 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.65306 -40.31898 -39.64716 -37.16053 -36.34011 -35.84395 -34.14393 -33.83566 -33.21550 -30.17288 -28.61837 -27.85950 -26.67237 -26.34688 -25.56426 -24.31473 -23.01211 -21.75645 -21.24330 -20.45462 -19.89336 -19.68888 -18.50327 -17.79440 -17.20277 -16.94619 -16.59751 -16.33961 -16.16584 -15.98151 -15.80785 -15.42145 -15.07461 -14.96775 -14.67834 -14.29296 -14.20252 -14.15107 -13.96479 -13.63770 -13.52975 -13.43754 -13.33179 -13.15576 -13.03458 -12.95191 -12.80943 -12.60541 -12.41006 -12.28842 -12.12386 -12.03278 -11.99493 -11.94481 -11.72108 -11.64205 -11.61450 -11.51134 -11.29341 -10.58931 -10.33255 -10.01458 -9.61732 -9.24762 -8.46755 -5.95502 1.36849 1.42262 1.56397 1.58465 1.99406 2.05297 2.29527 2.95298 3.20633 3.41639 3.45529 3.61561 3.72033 3.75953 3.88529 3.94758 3.97730 4.18814 4.23895 4.29894 4.31315 4.33359 4.46156 4.48212 4.53587 4.55393 4.62175 4.64923 4.70758 4.73013 4.75647 4.82330 4.87600 4.88441 4.95698 4.97845 5.04633 5.06565 5.13014 5.16361 5.26414 5.30167 5.33039 5.40633 5.41410 5.49862 5.60716 5.92205 6.13222 6.39291 6.44615 6.60031 7.12639 7.17482 7.56395 8.11336 8.70795 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023719 B = 0.001697 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.218827 B =16494.597918 C =17026.207374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.104 4.104 4 C -0.103 4.103 5 H 0.114 0.886 6 C -0.109 4.109 7 C -0.152 4.152 8 C 0.515 3.485 9 O -0.585 6.585 10 N -0.603 5.603 11 C 0.065 3.935 12 C 0.123 3.877 13 C -0.131 4.131 14 C 0.070 3.930 15 N -0.666 5.666 16 C 0.064 3.936 17 C 0.438 3.562 18 O -0.623 6.623 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.272 1.272 28 C -0.166 4.166 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.096 0.904 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.029 0.971 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.103 0.897 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.107 0.893 48 H 0.348 0.652 49 H 0.068 0.932 50 H 0.102 0.898 51 H 0.396 0.604 52 H 0.277 0.723 53 H 0.076 0.924 54 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.576 -21.867 -18.589 29.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.142 4.142 4 C -0.124 4.124 5 H 0.132 0.868 6 C -0.146 4.146 7 C -0.209 4.209 8 C 0.305 3.695 9 O -0.465 6.465 10 N -0.333 5.333 11 C -0.076 4.076 12 C 0.018 3.982 13 C -0.171 4.171 14 C -0.041 4.041 15 N -0.298 5.298 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.510 6.510 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.206 4.206 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.121 0.879 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.125 0.875 48 H 0.167 0.833 49 H 0.086 0.914 50 H 0.120 0.880 51 H 0.230 0.770 52 H 0.087 0.913 53 H 0.095 0.905 54 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.416 -21.421 -18.578 29.578 hybrid contribution 1.273 0.641 0.524 1.519 sum -7.144 -20.779 -18.054 28.439 Atomic orbital electron populations 1.21788 0.95718 1.02125 1.01645 1.21559 0.95922 0.94852 1.03244 1.21490 0.91620 0.98886 1.02180 1.21537 0.97601 0.91544 1.01766 0.86805 1.21498 0.96098 1.01559 0.95470 1.21782 0.95733 1.00762 1.02641 1.21279 0.75854 0.90244 0.82088 1.90647 1.55523 1.62239 1.38103 1.47932 1.66584 1.10247 1.08575 1.22063 1.03420 0.94643 0.87517 1.22308 0.96036 0.81483 0.98339 1.23482 0.97071 0.98491 0.98041 1.22900 0.96645 0.97181 0.87344 1.60007 1.54913 1.09225 1.05614 1.21582 0.96829 0.97216 0.91179 1.20897 0.82714 0.82707 0.91157 1.90487 1.45154 1.49293 1.66026 1.41950 1.40564 1.30920 1.07651 1.19714 1.26070 1.16769 0.83748 0.90255 1.26049 0.95333 0.95162 1.04793 1.69678 1.28012 1.20691 1.37766 0.84862 0.78299 0.78215 0.76909 1.19737 1.19569 1.19720 1.24108 0.98477 0.98896 0.99095 0.91805 0.92903 0.93243 0.90891 0.90522 0.91692 0.92773 0.88600 0.92960 0.91941 0.95218 0.91208 0.90223 0.88967 0.91080 0.87918 0.89294 0.91250 0.87465 0.83254 0.91416 0.87962 0.76989 0.91324 0.90483 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.91 71.98 0.71 -0.68 16 2 C -0.12 -0.99 5.70 30.60 0.17 -0.81 16 3 C -0.10 -1.30 4.67 30.60 0.14 -1.15 16 4 C -0.10 -1.41 1.47 -11.54 -0.02 -1.42 16 5 H 0.11 1.03 6.19 -2.39 -0.01 1.01 16 6 C -0.11 -1.48 5.05 30.59 0.15 -1.33 16 7 C -0.15 -2.13 9.78 71.98 0.70 -1.42 16 8 C 0.52 10.82 5.64 87.66 0.49 11.31 16 9 O -0.59 -17.24 15.55 -3.02 -0.05 -17.29 16 10 N -0.60 -10.98 3.08 -819.66 -2.53 -13.50 16 11 C 0.07 0.78 8.55 127.77 1.09 1.88 16 12 C 0.12 2.51 4.21 45.51 0.19 2.70 16 13 C -0.13 -2.80 7.40 31.12 0.23 -2.57 16 14 C 0.07 1.58 4.16 45.44 0.19 1.76 16 15 N -0.67 -20.01 6.24 -492.86 -3.07 -23.08 16 16 C 0.06 2.14 6.02 85.56 0.52 2.66 16 17 C 0.44 20.58 7.82 87.66 0.69 21.26 16 18 O -0.62 -34.09 15.78 -3.08 -0.05 -34.14 16 19 N -0.57 -29.29 5.29 -306.98 -1.62 -30.91 16 20 C -0.33 -18.89 9.68 84.04 0.81 -18.08 16 21 H 0.08 4.80 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 23 N -0.92 -49.57 13.05 21.66 0.28 -49.29 16 24 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 28 C -0.17 -3.15 7.09 31.12 0.22 -2.93 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.53 6.45 -2.39 -0.02 0.52 16 33 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.10 0.86 6.32 -2.39 -0.02 0.84 16 37 H 0.05 0.97 7.66 -2.38 -0.02 0.95 16 38 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.03 0.56 7.22 -2.39 -0.02 0.54 16 40 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 1.02 6.15 -2.39 -0.01 1.01 16 42 H 0.09 0.74 6.48 -2.38 -0.02 0.73 16 43 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.10 2.46 7.22 -2.39 -0.02 2.44 16 45 H 0.09 1.93 7.08 -2.39 -0.02 1.91 16 46 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 47 H 0.11 2.27 7.88 -2.39 -0.02 2.25 16 48 H 0.35 10.69 7.91 -89.70 -0.71 9.98 16 49 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 50 H 0.10 3.13 8.13 -2.39 -0.02 3.11 16 51 H 0.40 19.22 7.90 -92.71 -0.73 18.49 16 52 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 53 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 54 H 0.10 1.73 6.23 -2.39 -0.01 1.71 16 Total: -1.00 -71.84 424.53 1.22 -70.63 By element: Atomic # 1 Polarization: 42.42 SS G_CDS: -0.54 Total: 41.88 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 6.77 Total: 10.91 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -6.94 Total: -116.79 kcal Atomic # 8 Polarization: -51.33 SS G_CDS: -0.10 Total: -51.43 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -71.84 1.22 -70.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734597507.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.802 kcal (2) G-P(sol) polarization free energy of solvation -71.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds