Wall clock time and date at job start Tue Mar 31 2020 23:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47042 * 2 1 4 4 C 1.53003 * 109.47538 * 65.00012 * 3 2 1 5 5 C 1.52997 * 109.47132 * 185.57878 * 4 3 2 6 6 C 1.53003 * 109.47284 * 184.99867 * 3 2 1 7 7 H 1.09001 * 109.47429 * 186.60040 * 6 3 2 8 8 C 1.52997 * 109.47232 * 306.60440 * 6 3 2 9 9 C 1.50704 * 109.46896 * 66.60297 * 6 3 2 10 10 O 1.21277 * 120.00113 * 355.17305 * 9 6 3 11 11 N 1.34776 * 119.99893 * 175.17328 * 9 6 3 12 12 C 1.46504 * 119.99702 * 180.02562 * 11 9 6 13 13 H 1.08996 * 112.85362 * 336.19202 * 12 11 9 14 14 C 1.53959 * 113.66698 * 107.44302 * 12 11 9 15 15 C 1.53777 * 87.01941 * 139.92800 * 14 12 11 16 16 H 1.08998 * 113.61343 * 89.22882 * 15 14 12 17 17 N 1.46904 * 113.61041 * 220.04285 * 15 14 12 18 18 C 1.46902 * 110.99962 * 254.13790 * 17 15 14 19 19 C 1.50704 * 109.47083 * 180.02562 * 18 17 15 20 20 O 1.21299 * 119.99812 * 359.97438 * 19 18 17 21 21 N 1.34770 * 120.00115 * 180.02562 * 19 18 17 22 22 C 1.37101 * 120.00155 * 179.72453 * 21 19 18 23 23 H 1.07999 * 119.99966 * 0.27422 * 22 21 19 24 24 C 1.38943 * 120.00330 * 180.27306 * 22 21 19 25 25 N 1.31411 * 120.00501 * 179.97438 * 24 22 21 26 26 Si 1.86805 * 119.99998 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47461 * 89.99864 * 26 24 22 28 28 H 1.48497 * 109.47123 * 210.00382 * 26 24 22 29 29 H 1.48506 * 109.46968 * 329.99449 * 26 24 22 30 30 C 1.53769 * 87.17512 * 334.63516 * 15 14 12 31 31 H 1.09006 * 109.46888 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46832 * 299.99958 * 1 2 3 33 33 H 1.08999 * 109.47238 * 60.00390 * 1 2 3 34 34 H 1.09000 * 109.47362 * 239.99489 * 2 1 3 35 35 H 1.09004 * 109.47365 * 120.00059 * 2 1 3 36 36 H 1.08999 * 109.47262 * 304.99718 * 3 2 1 37 37 H 1.09001 * 109.46636 * 305.57667 * 4 3 2 38 38 H 1.08998 * 109.47105 * 65.57594 * 4 3 2 39 39 H 1.09005 * 109.46924 * 294.87525 * 5 4 3 40 40 H 1.08992 * 109.47541 * 54.88125 * 5 4 3 41 41 H 1.09000 * 109.46618 * 174.88256 * 5 4 3 42 42 H 1.08998 * 109.47022 * 300.00343 * 8 6 3 43 43 H 1.09001 * 109.47240 * 59.99484 * 8 6 3 44 44 H 1.08998 * 109.47483 * 179.97438 * 8 6 3 45 45 H 0.96995 * 120.00059 * 359.97438 * 11 9 6 46 46 H 1.09000 * 113.61526 * 25.40106 * 14 12 11 47 47 H 1.09000 * 113.66298 * 254.45981 * 14 12 11 48 48 H 1.00898 * 110.99500 * 130.18596 * 17 15 14 49 49 H 1.08997 * 109.47163 * 60.00489 * 18 17 15 50 50 H 1.08999 * 109.47499 * 300.00267 * 18 17 15 51 51 H 0.96999 * 120.00305 * 359.97438 * 21 19 18 52 52 H 0.96997 * 120.00269 * 180.02562 * 25 24 22 53 53 H 1.08999 * 113.61360 * 139.93780 * 30 15 14 54 54 H 1.08995 * 113.61752 * 270.84050 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 1.3073 5 6 2.0224 3.6057 1.2500 6 6 3.5648 1.4444 -0.1257 7 1 3.9379 2.4618 -0.0082 8 6 4.1672 0.5516 0.9610 9 6 3.9576 0.9189 -1.4824 10 8 3.1087 0.4949 -2.2376 11 7 5.2524 0.9200 -1.8565 12 6 5.6342 0.4097 -3.1756 13 1 4.9090 -0.2946 -3.5832 14 6 6.0492 1.5112 -4.1681 15 6 7.1608 0.5579 -4.6372 16 1 6.8544 -0.1057 -5.4458 17 7 8.4389 1.2309 -4.9049 18 6 8.6862 1.3359 -6.3491 19 6 10.0034 2.0296 -6.5841 20 8 10.6702 2.4003 -5.6411 21 7 10.4399 2.2388 -7.8418 22 6 11.6354 2.8748 -8.0557 23 1 12.2296 3.2043 -7.2161 24 6 12.0828 3.0956 -9.3525 25 7 13.2285 3.7057 -9.5575 26 14 11.0549 2.5265 -10.8047 27 1 10.1230 3.6105 -11.2068 28 1 11.9482 2.1939 -11.9434 29 1 10.2763 1.3223 -10.4184 30 6 7.0863 -0.0918 -3.2455 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 1.6054 1.9815 -0.8418 37 1 0.5576 2.0382 1.4451 38 1 2.1487 1.6487 2.1416 39 1 3.1077 3.6956 1.2037 40 1 1.5817 4.0626 0.3640 41 1 1.6536 4.1125 2.1418 42 1 3.8830 0.9316 1.9423 43 1 3.7942 -0.4658 0.8435 44 1 5.2535 0.5526 0.8712 45 1 5.9314 1.2594 -1.2526 46 1 6.4231 2.4146 -3.6863 47 1 5.2992 1.7170 -4.9318 48 1 9.2003 0.7585 -4.4411 49 1 7.8849 1.9101 -6.8142 50 1 8.7187 0.3378 -6.7858 51 1 9.9065 1.9426 -8.5959 52 1 13.5406 3.8602 -10.4628 53 1 7.1725 -1.1781 -3.2656 54 1 7.7444 0.3725 -2.5111 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752737698.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:17 Heat of formation + Delta-G solvation = -97.148450 kcal Electronic energy + Delta-G solvation = -29313.360377 eV Core-core repulsion = 25283.904108 eV Total energy + Delta-G solvation = -4029.456269 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.45272 -40.42610 -39.73190 -37.94014 -36.15977 -35.46583 -33.97846 -33.69673 -32.59900 -32.20219 -28.63439 -27.22569 -26.68369 -26.22875 -25.34257 -23.65926 -23.38981 -21.62953 -21.33664 -20.85849 -20.23091 -19.61957 -18.07216 -17.93734 -17.33323 -17.00129 -16.56642 -16.41233 -16.07584 -15.99922 -15.54167 -15.41966 -15.13204 -14.96906 -14.86194 -14.71529 -14.41383 -14.07130 -14.00921 -13.64090 -13.37053 -13.30795 -13.23267 -13.10143 -12.94404 -12.91842 -12.70762 -12.49186 -12.41850 -12.26321 -12.12977 -12.02553 -11.94411 -11.82980 -11.53834 -11.50561 -11.36012 -11.26796 -11.07165 -10.50209 -10.39131 -10.25293 -9.93125 -9.32697 -8.41860 -6.02778 1.29840 1.35333 1.43940 1.69480 1.94949 2.22344 2.25078 2.77696 3.14568 3.43437 3.57132 3.63990 3.70134 3.84819 3.86290 3.95958 4.03788 4.16100 4.20368 4.34364 4.39726 4.42368 4.45110 4.53359 4.53781 4.58688 4.64532 4.72543 4.81665 4.83715 4.86252 4.94325 4.99388 5.02932 5.05350 5.10149 5.13386 5.17056 5.20639 5.28096 5.32825 5.34762 5.50073 5.52207 5.57519 5.63690 5.67123 5.91785 6.10586 6.41267 6.59201 6.63500 6.87400 7.33374 7.39238 7.95475 8.75672 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025218 B = 0.001610 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.052978 B =17385.316265 C =17588.837494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.064 4.064 4 C -0.118 4.118 5 C -0.157 4.157 6 C -0.105 4.105 7 H 0.110 0.890 8 C -0.144 4.144 9 C 0.513 3.487 10 O -0.576 6.576 11 N -0.709 5.709 12 C 0.128 3.872 13 H 0.104 0.896 14 C -0.138 4.138 15 C 0.060 3.940 16 H 0.089 0.911 17 N -0.670 5.670 18 C 0.061 3.939 19 C 0.448 3.552 20 O -0.614 6.614 21 N -0.591 5.591 22 C -0.330 4.330 23 H 0.056 0.944 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.964 3.036 27 H -0.258 1.258 28 H -0.275 1.275 29 H -0.231 1.231 30 C -0.132 4.132 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.044 0.956 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.412 0.588 46 H 0.082 0.918 47 H 0.062 0.938 48 H 0.348 0.652 49 H 0.108 0.892 50 H 0.078 0.922 51 H 0.389 0.611 52 H 0.279 0.721 53 H 0.089 0.911 54 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.492 -9.994 20.545 34.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.083 4.083 4 C -0.155 4.155 5 C -0.214 4.214 6 C -0.126 4.126 7 H 0.128 0.872 8 C -0.201 4.201 9 C 0.301 3.699 10 O -0.456 6.456 11 N -0.360 5.360 12 C 0.022 3.978 13 H 0.122 0.878 14 C -0.178 4.178 15 C -0.050 4.050 16 H 0.107 0.893 17 N -0.303 5.303 18 C -0.072 4.072 19 C 0.236 3.764 20 O -0.498 6.498 21 N -0.233 5.233 22 C -0.459 4.459 23 H 0.074 0.926 24 C -0.213 4.213 25 N -0.574 5.574 26 Si 0.784 3.216 27 H -0.183 1.183 28 H -0.200 1.200 29 H -0.155 1.155 30 C -0.171 4.171 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.249 0.751 46 H 0.100 0.900 47 H 0.081 0.919 48 H 0.168 0.832 49 H 0.126 0.874 50 H 0.096 0.904 51 H 0.225 0.775 52 H 0.089 0.911 53 H 0.107 0.893 54 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -26.739 -9.346 20.562 35.002 hybrid contribution 0.718 -0.477 -1.330 1.586 sum -26.021 -9.823 19.231 33.815 Atomic orbital electron populations 1.21782 0.95882 1.01432 1.01542 1.21695 0.96055 0.96445 1.01951 1.20943 0.92574 0.96582 0.98193 1.21665 1.01753 0.95533 0.96591 1.21852 1.01803 0.96079 1.01653 1.21440 0.97739 1.02106 0.91354 0.87199 1.21873 1.01075 0.99156 0.97994 1.21247 0.82113 0.77177 0.89346 1.90647 1.50658 1.48434 1.55840 1.45963 1.08397 1.63847 1.17793 1.22208 0.95798 0.96415 0.83361 0.87796 1.23573 0.97164 0.98358 0.98709 1.22915 0.89553 0.95220 0.97314 0.89302 1.60186 1.04931 1.56906 1.08259 1.21691 0.93850 1.00282 0.91334 1.20996 0.89311 0.83648 0.82405 1.90539 1.60291 1.55999 1.42978 1.42045 1.19896 1.54151 1.07203 1.19017 0.97470 1.35226 0.94187 0.92604 1.26101 0.97632 0.96596 1.00959 1.69800 1.21837 1.42372 1.23404 0.85374 0.78695 0.80230 0.77279 1.18296 1.19965 1.15461 1.23504 0.95377 1.01681 0.96529 0.92900 0.91578 0.94074 0.92655 0.91209 0.92954 0.91384 0.90401 0.92114 0.93645 0.92042 0.89633 0.92433 0.91162 0.75091 0.89981 0.91894 0.83218 0.87368 0.90393 0.77507 0.91141 0.89289 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.67 71.98 0.70 -1.38 16 2 C -0.12 -1.89 4.48 30.59 0.14 -1.75 16 3 C -0.06 -0.88 1.27 -10.79 -0.01 -0.90 16 4 C -0.12 -1.13 5.17 30.59 0.16 -0.97 16 5 C -0.16 -1.47 9.56 71.98 0.69 -0.78 16 6 C -0.11 -1.29 2.38 -11.54 -0.03 -1.31 16 7 H 0.11 1.08 6.41 -2.39 -0.02 1.07 16 8 C -0.14 -1.18 8.40 71.98 0.60 -0.57 16 9 C 0.51 9.45 6.86 87.66 0.60 10.05 16 10 O -0.58 -15.18 13.53 -3.02 -0.04 -15.22 16 11 N -0.71 -10.79 5.32 -439.74 -2.34 -13.13 16 12 C 0.13 2.21 4.24 45.58 0.19 2.41 16 13 H 0.10 2.06 7.46 -2.39 -0.02 2.04 16 14 C -0.14 -2.82 7.69 31.18 0.24 -2.58 16 15 C 0.06 1.19 4.12 45.44 0.19 1.37 16 16 H 0.09 1.54 7.88 -2.39 -0.02 1.52 16 17 N -0.67 -18.59 6.18 -492.87 -3.04 -21.63 16 18 C 0.06 1.83 6.02 85.56 0.52 2.34 16 19 C 0.45 20.09 7.82 87.66 0.69 20.78 16 20 O -0.61 -33.70 15.78 -3.09 -0.05 -33.75 16 21 N -0.59 -27.86 5.09 -306.99 -1.56 -29.42 16 22 C -0.33 -19.35 10.16 84.04 0.85 -18.50 16 23 H 0.06 3.90 7.39 -2.91 -0.02 3.88 16 24 C -0.01 -0.79 5.50 84.92 0.47 -0.32 16 25 N -0.93 -56.30 13.96 21.66 0.30 -55.99 16 26 Si 0.96 38.82 27.74 68.60 1.90 40.73 16 27 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 28 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 29 H -0.23 -7.82 6.52 99.48 0.65 -7.17 16 30 C -0.13 -2.03 7.42 31.12 0.23 -1.80 16 31 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.07 0.72 6.45 -2.39 -0.02 0.71 16 33 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 1.17 5.86 -2.39 -0.01 1.15 16 35 H 0.07 0.86 6.64 -2.38 -0.02 0.85 16 36 H 0.05 0.98 7.97 -2.39 -0.02 0.96 16 37 H 0.07 0.65 6.32 -2.39 -0.02 0.64 16 38 H 0.08 0.56 6.39 -2.39 -0.02 0.55 16 39 H 0.06 0.50 6.69 -2.38 -0.02 0.49 16 40 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.08 0.47 6.51 -2.39 -0.02 0.45 16 43 H 0.06 0.58 6.44 -2.39 -0.02 0.57 16 44 H 0.07 0.44 7.91 -2.39 -0.02 0.42 16 45 H 0.41 4.39 8.50 -92.71 -0.79 3.61 16 46 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.35 10.10 8.26 -89.70 -0.74 9.36 16 49 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 50 H 0.08 1.89 8.13 -2.39 -0.02 1.87 16 51 H 0.39 15.20 5.76 -92.71 -0.53 14.66 16 52 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 53 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 54 H 0.10 1.49 8.12 -2.39 -0.02 1.47 16 Total: -1.00 -78.90 417.63 0.19 -78.71 By element: Atomic # 1 Polarization: 44.82 SS G_CDS: -1.20 Total: 43.62 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 6.22 Total: 6.09 kcal Atomic # 7 Polarization: -113.53 SS G_CDS: -6.64 Total: -120.18 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: -0.09 Total: -48.97 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 1.90 Total: 40.73 kcal Total: -78.90 0.19 -78.71 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752737698.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.441 kcal (2) G-P(sol) polarization free energy of solvation -78.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds