Wall clock time and date at job start Tue Mar 31 2020 23:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46782 * 2 1 4 4 C 1.53000 * 109.47144 * 119.99874 * 2 1 3 5 5 H 1.08999 * 109.47124 * 184.99780 * 4 2 1 6 6 C 1.53006 * 109.46779 * 65.00198 * 4 2 1 7 7 N 1.46500 * 109.46877 * 184.99586 * 6 4 2 8 8 C 1.34780 * 120.00259 * 179.97438 * 7 6 4 9 9 O 1.21281 * 119.99307 * 0.02562 * 8 7 6 10 10 C 1.50690 * 120.00144 * 180.02562 * 8 7 6 11 11 N 1.46506 * 109.47072 * 179.97438 * 10 8 7 12 12 C 1.34773 * 119.99968 * 179.97438 * 11 10 8 13 13 O 1.21283 * 120.00360 * 359.73034 * 12 11 10 14 14 C 1.50706 * 120.00081 * 180.02562 * 12 11 10 15 15 C 1.52998 * 109.47348 * 179.72561 * 14 12 11 16 16 C 1.54258 * 110.03455 * 292.90875 * 15 14 12 17 17 C 1.54967 * 104.16246 * 217.13741 * 16 15 14 18 18 C 1.54887 * 102.77367 * 37.88475 * 17 16 15 19 19 C 1.53874 * 110.03277 * 175.68717 * 15 14 12 20 20 N 1.46502 * 109.47292 * 305.00233 * 4 2 1 21 21 C 1.36932 * 119.99945 * 275.00176 * 20 4 2 22 22 H 1.08000 * 120.00030 * 359.97438 * 21 20 4 23 23 C 1.38807 * 119.99988 * 180.02562 * 21 20 4 24 24 N 1.31620 * 119.99943 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00013 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47354 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47287 * 119.99891 * 25 23 21 28 28 H 1.48504 * 109.47059 * 239.99499 * 25 23 21 29 29 H 1.09004 * 109.47369 * 299.99386 * 1 2 3 30 30 H 1.08992 * 109.47187 * 60.00394 * 1 2 3 31 31 H 1.09004 * 109.46917 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47085 * 239.99839 * 2 1 3 33 33 H 1.08997 * 109.46845 * 60.00519 * 3 2 1 34 34 H 1.09001 * 109.46370 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.46937 * 299.99759 * 3 2 1 36 36 H 1.08999 * 109.46984 * 65.00413 * 6 4 2 37 37 H 1.08993 * 109.47314 * 304.99850 * 6 4 2 38 38 H 0.97005 * 120.00172 * 0.02562 * 7 6 4 39 39 H 1.09004 * 109.47343 * 60.00501 * 10 8 7 40 40 H 1.08998 * 109.47656 * 300.00359 * 10 8 7 41 41 H 0.96998 * 119.99507 * 0.02562 * 11 10 8 42 42 H 1.09001 * 109.46564 * 299.73030 * 14 12 11 43 43 H 1.08998 * 109.47012 * 59.72084 * 14 12 11 44 44 H 1.09006 * 110.01511 * 54.30082 * 15 14 12 45 45 H 1.09005 * 110.48463 * 335.78619 * 16 15 14 46 46 H 1.09006 * 110.48910 * 98.42335 * 16 15 14 47 47 H 1.09007 * 110.71710 * 279.57479 * 17 16 15 48 48 H 1.09001 * 110.92470 * 156.29521 * 17 16 15 49 49 H 1.09006 * 110.48348 * 203.40513 * 18 17 16 50 50 H 1.08996 * 110.59816 * 80.82043 * 18 17 16 51 51 H 1.09001 * 110.03624 * 238.57082 * 19 15 14 52 52 H 1.09006 * 110.03109 * 359.95719 * 19 15 14 53 53 H 0.96998 * 119.99736 * 95.00317 * 20 4 2 54 54 H 0.97008 * 119.99863 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1263 -0.6443 1.2951 6 6 1.6352 -2.1955 1.1879 7 7 2.0185 -2.8594 2.4363 8 6 1.7588 -4.1706 2.6096 9 8 1.2084 -4.8008 1.7317 10 6 2.1525 -4.8533 3.8940 11 7 1.7640 -6.2647 3.8358 12 6 2.0185 -7.0774 4.8804 13 8 2.5737 -6.6415 5.8666 14 6 1.6194 -8.5294 4.8203 15 6 2.0257 -9.2243 6.1214 16 6 3.5632 -9.2823 6.2317 17 6 3.8448 -10.6594 6.8843 18 6 2.7818 -11.5739 6.2265 19 6 1.5288 -10.6806 6.1185 20 7 1.4558 -0.1037 2.4424 21 6 2.0441 1.0002 2.9997 22 1 2.9388 1.4153 2.5599 23 6 1.4909 1.5850 4.1305 24 7 0.4007 1.0788 4.6668 25 14 2.2937 3.0904 4.8912 26 1 3.4985 3.4593 4.1052 27 1 1.3316 4.2216 4.8835 28 1 2.6895 2.7868 6.2899 29 1 -0.3634 0.5137 0.8901 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 2.1409 -2.6765 0.3506 37 1 0.5564 -2.2707 1.0527 38 1 2.4584 -2.3552 3.1386 39 1 1.6469 -4.3720 4.7312 40 1 3.2314 -4.7784 4.0295 41 1 1.3242 -6.6144 3.0451 42 1 0.5398 -8.6042 4.6900 43 1 2.1208 -9.0095 3.9799 44 1 1.6099 -8.6896 6.9755 45 1 4.0189 -9.2286 5.2429 46 1 3.9309 -8.4761 6.8665 47 1 3.6988 -10.6117 7.9635 48 1 4.8512 -11.0042 6.6469 49 1 2.5800 -12.4394 6.8577 50 1 3.1095 -11.8926 5.2371 51 1 0.8726 -10.8530 6.9717 52 1 0.9975 -10.8920 5.1905 53 1 0.6524 -0.4767 2.8376 54 1 0.0139 1.4878 5.4568 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753840263.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:49 Heat of formation + Delta-G solvation = -114.583967 kcal Electronic energy + Delta-G solvation = -29689.820324 eV Core-core repulsion = 25659.607994 eV Total energy + Delta-G solvation = -4030.212330 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.33059 -40.50460 -38.92560 -38.57530 -35.58791 -35.25877 -34.72504 -32.61381 -31.98477 -30.29462 -29.49659 -28.56855 -27.75178 -26.30007 -25.39382 -23.53041 -21.75125 -21.58708 -21.42981 -20.45939 -20.21117 -19.28240 -18.72982 -17.60591 -17.34678 -17.05742 -16.72779 -16.61549 -16.13284 -16.11172 -15.80033 -15.59014 -15.18888 -14.96530 -14.77712 -14.50348 -14.30372 -14.16089 -14.10245 -13.81006 -13.67420 -13.28045 -12.91352 -12.90697 -12.80457 -12.68371 -12.39358 -12.14497 -12.10875 -11.93271 -11.90857 -11.87891 -11.81697 -11.64448 -11.49335 -11.38452 -11.26712 -11.18286 -11.08416 -10.87918 -10.79782 -10.24712 -10.00704 -8.92249 -7.86023 -5.11198 1.48314 1.48881 1.51928 1.58490 1.65376 1.83250 2.50668 2.61122 3.48019 3.60149 3.68495 3.74713 3.83291 3.92430 3.95912 4.04428 4.27255 4.29494 4.36189 4.37211 4.39132 4.45338 4.47329 4.61366 4.65869 4.69935 4.75786 4.77647 4.86485 4.92641 4.96948 4.99815 5.00279 5.12867 5.13659 5.15679 5.24014 5.25765 5.29965 5.30481 5.35341 5.41896 5.51290 5.52607 5.57803 5.61288 5.65559 5.83001 6.34811 6.47559 6.51677 7.10108 7.22245 7.43548 8.16052 8.40245 9.36838 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014538 B = 0.002050 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.568327 B =13654.958231 C =15001.406877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 C -0.138 4.138 4 C 0.167 3.833 5 H 0.058 0.942 6 C 0.121 3.879 7 N -0.705 5.705 8 C 0.512 3.488 9 O -0.574 6.574 10 C 0.104 3.896 11 N -0.714 5.714 12 C 0.509 3.491 13 O -0.577 6.577 14 C -0.126 4.126 15 C -0.078 4.078 16 C -0.115 4.115 17 C -0.128 4.128 18 C -0.122 4.122 19 C -0.118 4.118 20 N -0.720 5.720 21 C -0.208 4.208 22 H 0.079 0.921 23 C -0.073 4.073 24 N -0.966 5.966 25 Si 0.953 3.047 26 H -0.267 1.267 27 H -0.304 1.304 28 H -0.302 1.302 29 H 0.035 0.965 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.412 0.588 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.417 0.583 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.046 0.954 47 H 0.061 0.939 48 H 0.069 0.931 49 H 0.072 0.928 50 H 0.072 0.928 51 H 0.066 0.934 52 H 0.082 0.918 53 H 0.373 0.627 54 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.175 -22.277 -4.412 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 C -0.196 4.196 4 C 0.058 3.942 5 H 0.076 0.924 6 C -0.003 4.003 7 N -0.356 5.356 8 C 0.298 3.702 9 O -0.455 6.455 10 C -0.024 4.024 11 N -0.370 5.370 12 C 0.297 3.703 13 O -0.456 6.456 14 C -0.166 4.166 15 C -0.097 4.097 16 C -0.153 4.153 17 C -0.165 4.165 18 C -0.159 4.159 19 C -0.155 4.155 20 N -0.360 5.360 21 C -0.340 4.340 22 H 0.097 0.903 23 C -0.265 4.265 24 N -0.618 5.618 25 Si 0.785 3.215 26 H -0.191 1.191 27 H -0.233 1.233 28 H -0.230 1.230 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.249 0.751 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.255 0.745 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.090 0.910 50 H 0.091 0.909 51 H 0.085 0.915 52 H 0.100 0.900 53 H 0.206 0.794 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.327 -22.234 -4.336 23.062 hybrid contribution -0.161 1.577 0.950 1.848 sum 4.166 -20.657 -3.386 21.343 Atomic orbital electron populations 1.21687 0.95903 1.00808 1.00719 1.21584 0.95900 0.96870 0.98238 1.21768 1.00011 0.96566 1.01235 1.20722 0.96824 0.89153 0.87463 0.92415 1.21671 1.00209 0.92507 0.85948 1.45907 1.60246 1.09173 1.20235 1.20598 0.78387 0.82520 0.88696 1.90638 1.44534 1.65352 1.44963 1.20967 1.02814 0.83236 0.95381 1.45780 1.62173 1.08504 1.20528 1.21420 0.77661 0.89699 0.81494 1.90704 1.43682 1.77923 1.33293 1.21909 1.04693 0.89023 1.00946 1.21530 0.95998 0.96172 0.96021 1.22377 0.95327 0.97134 1.00479 1.22545 0.99438 0.94779 0.99744 1.22359 0.94699 0.97712 1.01165 1.22219 0.97968 0.92428 1.02933 1.42498 1.31360 1.32605 1.29572 1.19493 1.06045 1.03321 1.05135 0.90279 1.25290 0.98870 1.02179 1.00134 1.69795 1.23780 1.43747 1.24447 0.85355 0.77794 0.80344 0.77986 1.19100 1.23257 1.22995 0.94619 0.92722 0.93036 0.90166 0.93206 0.93352 0.93022 0.90032 0.92300 0.75111 0.88856 0.87655 0.74491 0.86700 0.86517 0.92362 0.92028 0.93541 0.92004 0.91220 0.90959 0.90905 0.91472 0.89984 0.79436 0.94619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 8.74 71.98 0.63 -3.59 16 2 C -0.10 -3.15 2.74 -10.79 -0.03 -3.18 16 3 C -0.14 -4.44 8.46 71.98 0.61 -3.83 16 4 C 0.17 5.51 2.29 44.99 0.10 5.61 16 5 H 0.06 1.90 8.08 -2.39 -0.02 1.88 16 6 C 0.12 3.59 5.10 86.38 0.44 4.03 16 7 N -0.71 -20.75 5.39 -463.07 -2.50 -23.24 16 8 C 0.51 14.67 7.90 87.65 0.69 15.36 16 9 O -0.57 -18.64 15.67 -3.03 -0.05 -18.68 16 10 C 0.10 2.63 6.15 85.63 0.53 3.15 16 11 N -0.71 -16.20 5.53 -466.79 -2.58 -18.78 16 12 C 0.51 11.87 7.61 87.66 0.67 12.54 16 13 O -0.58 -18.03 14.78 -3.04 -0.04 -18.08 16 14 C -0.13 -1.90 4.83 29.85 0.14 -1.75 16 15 C -0.08 -1.32 2.55 -10.07 -0.03 -1.34 16 16 C -0.12 -2.15 5.40 31.69 0.17 -1.98 16 17 C -0.13 -1.84 6.91 31.91 0.22 -1.62 16 18 C -0.12 -1.37 6.83 31.67 0.22 -1.15 16 19 C -0.12 -1.39 6.46 31.32 0.20 -1.19 16 20 N -0.72 -30.59 3.53 -322.94 -1.14 -31.72 16 21 C -0.21 -10.06 7.75 84.03 0.65 -9.40 16 22 H 0.08 3.71 7.32 -2.91 -0.02 3.69 16 23 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 24 N -0.97 -55.71 13.06 21.65 0.28 -55.42 16 25 Si 0.95 44.23 29.55 68.60 2.03 46.26 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 27 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 28 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 29 H 0.03 1.38 7.47 -2.38 -0.02 1.36 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.05 1.52 6.46 -2.38 -0.02 1.51 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.05 1.97 5.99 -2.39 -0.01 1.95 16 34 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.06 1.90 6.34 -2.39 -0.02 1.89 16 38 H 0.41 12.56 8.14 -92.70 -0.75 11.81 16 39 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.42 8.50 7.44 -92.71 -0.69 7.81 16 42 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.12 1.27 8.02 -2.39 -0.02 1.25 16 44 H 0.06 1.24 7.95 -2.38 -0.02 1.22 16 45 H 0.06 1.11 7.77 -2.38 -0.02 1.09 16 46 H 0.05 1.11 7.63 -2.38 -0.02 1.09 16 47 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 48 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 50 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 52 H 0.08 0.72 7.67 -2.38 -0.02 0.70 16 53 H 0.37 17.85 7.80 -92.71 -0.72 17.13 16 54 H 0.24 14.07 8.31 -92.70 -0.77 13.30 16 Total: -1.00 -63.80 422.28 0.42 -63.38 By element: Atomic # 1 Polarization: 49.27 SS G_CDS: -1.27 Total: 48.01 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 5.68 Total: 8.27 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -5.93 Total: -129.16 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -0.09 Total: -36.76 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -63.80 0.42 -63.38 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753840263.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.202 kcal (2) G-P(sol) polarization free energy of solvation -63.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds