Wall clock time and date at job start Tue Mar 31 2020 23:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2 8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4 9 9 O 1.21278 * 120.00286 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.99538 * 179.97438 * 8 7 6 11 11 N 1.46505 * 109.46805 * 179.97438 * 10 8 7 12 12 C 1.34776 * 119.99872 * 180.02562 * 11 10 8 13 13 O 1.21286 * 120.00258 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00113 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.47685 * 179.97438 * 14 12 11 16 16 C 1.54271 * 110.03187 * 292.91264 * 15 14 12 17 17 C 1.54965 * 104.15863 * 217.13472 * 16 15 14 18 18 C 1.54893 * 102.77844 * 37.88133 * 17 16 15 19 19 C 1.53869 * 110.03626 * 175.69141 * 15 14 12 20 20 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 4 2 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 4 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 4 24 24 N 1.31617 * 119.99873 * 180.27450 * 23 21 20 25 25 Si 1.86800 * 120.00209 * 0.27770 * 23 21 20 26 26 H 1.48498 * 109.47118 * 89.99559 * 25 23 21 27 27 H 1.48499 * 109.47134 * 210.00079 * 25 23 21 28 28 H 1.48507 * 109.46904 * 329.99901 * 25 23 21 29 29 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 30 30 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 31 31 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 33 33 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 35 35 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 36 36 H 1.09009 * 109.46837 * 294.99855 * 6 4 2 37 37 H 1.09000 * 109.47433 * 54.99587 * 6 4 2 38 38 H 0.97000 * 120.00018 * 359.97438 * 7 6 4 39 39 H 1.09000 * 109.47726 * 299.99386 * 10 8 7 40 40 H 1.08998 * 109.47231 * 60.00064 * 10 8 7 41 41 H 0.96997 * 120.00059 * 359.97438 * 11 10 8 42 42 H 1.09003 * 109.47473 * 300.00002 * 14 12 11 43 43 H 1.09008 * 109.47350 * 59.99843 * 14 12 11 44 44 H 1.08998 * 110.01308 * 54.29772 * 15 14 12 45 45 H 1.09007 * 110.48601 * 335.77698 * 16 15 14 46 46 H 1.09000 * 110.48935 * 98.42205 * 16 15 14 47 47 H 1.09000 * 110.71893 * 279.57368 * 17 16 15 48 48 H 1.08999 * 110.92450 * 156.29669 * 17 16 15 49 49 H 1.08999 * 110.48299 * 203.40621 * 18 17 16 50 50 H 1.09005 * 110.59263 * 80.82009 * 18 17 16 51 51 H 1.09006 * 110.03179 * 238.56794 * 19 15 14 52 52 H 1.09002 * 110.03310 * 359.94921 * 19 15 14 53 53 H 0.97000 * 119.99792 * 264.99726 * 20 4 2 54 54 H 0.97000 * 120.00553 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 7 2.1141 -2.8884 2.3806 8 6 1.8060 -4.1849 2.5819 9 8 1.0449 -4.7517 1.8268 10 6 2.4073 -4.9302 3.7455 11 7 1.9189 -6.3115 3.7455 12 6 2.3254 -7.1700 4.7016 13 8 3.0959 -6.7992 5.5618 14 6 1.8226 -8.5906 4.7020 15 6 2.4331 -9.3475 5.8832 16 6 3.9537 -9.5083 5.6787 17 6 4.2646 -10.9189 6.2400 18 6 3.0301 -11.7433 5.7978 19 6 1.8461 -10.7678 5.9593 20 7 3.5050 -0.7218 1.2488 21 6 4.1901 0.3528 1.7498 22 1 3.6506 1.2005 2.1454 23 6 5.5783 0.3498 1.7547 24 7 6.2368 1.3803 2.2411 25 14 6.5117 -1.1167 1.0710 26 1 6.7647 -0.9108 -0.3777 27 1 7.8064 -1.2561 1.7848 28 1 5.7058 -2.3494 1.2623 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 0.4436 -2.1651 1.3387 37 1 1.8183 -2.6512 0.3177 38 1 2.7232 -2.4351 2.9844 39 1 3.4936 -4.9287 3.6558 40 1 2.1190 -4.4433 4.6770 41 1 1.3024 -6.6079 3.0578 42 1 0.7363 -8.5916 4.7918 43 1 2.1105 -9.0782 3.7706 44 1 2.2359 -8.8117 6.8117 45 1 4.2038 -9.4561 4.6190 46 1 4.4966 -8.7462 6.2377 47 1 4.3424 -10.8928 7.3269 48 1 5.1763 -11.3213 5.7985 49 1 2.9000 -12.6116 6.4438 50 1 3.1292 -12.0541 4.7578 51 1 1.3647 -10.9215 6.9252 52 1 1.1255 -10.9176 5.1553 53 1 3.9897 -1.4834 0.8938 54 1 7.2068 1.3785 2.2443 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753840264.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:53 Heat of formation + Delta-G solvation = -114.014447 kcal Electronic energy + Delta-G solvation = -29723.099893 eV Core-core repulsion = 25692.912259 eV Total energy + Delta-G solvation = -4030.187634 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.36656 -40.54628 -38.97858 -38.60073 -35.61407 -35.29687 -34.94466 -32.75864 -32.58670 -30.48546 -29.51257 -28.66912 -27.56420 -26.32908 -25.09204 -23.28174 -21.78955 -21.66698 -21.45450 -20.95474 -20.42162 -19.63673 -18.73548 -17.64804 -17.30290 -17.19576 -16.89505 -16.64208 -16.27427 -16.04230 -15.79091 -15.64394 -15.00426 -14.98900 -14.80569 -14.54473 -14.43900 -14.21165 -14.16735 -14.03066 -13.64764 -13.44563 -12.98162 -12.94820 -12.89823 -12.82632 -12.52162 -12.24780 -12.12453 -11.96826 -11.92325 -11.83455 -11.77763 -11.65868 -11.51459 -11.48756 -11.33016 -11.27771 -11.14766 -10.90219 -10.83409 -10.27781 -10.07451 -9.27738 -7.95668 -5.27774 1.38557 1.40603 1.44069 1.47858 1.63424 1.78686 2.46565 2.51212 3.35835 3.52534 3.59755 3.66727 3.73037 3.81806 3.85784 4.02467 4.23613 4.25503 4.28542 4.34386 4.36263 4.43697 4.45041 4.59956 4.61593 4.64643 4.72277 4.74514 4.85089 4.91175 4.91518 4.95856 4.98144 5.04970 5.11962 5.14178 5.16839 5.23676 5.24536 5.28390 5.30139 5.40042 5.46159 5.51193 5.56318 5.62643 5.76460 5.87435 6.26783 6.41986 6.48947 7.04451 7.13180 7.20420 7.87424 8.05618 9.25319 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013431 B = 0.002233 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.259878 B =12534.135663 C =14139.942815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.135 4.135 4 C 0.174 3.826 5 H 0.059 0.941 6 C 0.120 3.880 7 N -0.711 5.711 8 C 0.513 3.487 9 O -0.570 6.570 10 C 0.100 3.900 11 N -0.715 5.715 12 C 0.509 3.491 13 O -0.576 6.576 14 C -0.127 4.127 15 C -0.077 4.077 16 C -0.117 4.117 17 C -0.128 4.128 18 C -0.123 4.123 19 C -0.117 4.117 20 N -0.746 5.746 21 C -0.201 4.201 22 H 0.068 0.932 23 C -0.061 4.061 24 N -0.983 5.983 25 Si 0.940 3.060 26 H -0.289 1.289 27 H -0.306 1.306 28 H -0.252 1.252 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.038 0.962 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.413 0.587 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.417 0.583 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.045 0.955 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.072 0.928 50 H 0.070 0.930 51 H 0.069 0.931 52 H 0.082 0.918 53 H 0.363 0.637 54 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.955 -23.453 2.816 27.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 C -0.192 4.192 4 C 0.065 3.935 5 H 0.077 0.923 6 C -0.004 4.004 7 N -0.362 5.362 8 C 0.299 3.701 9 O -0.450 6.450 10 C -0.027 4.027 11 N -0.370 5.370 12 C 0.297 3.703 13 O -0.456 6.456 14 C -0.166 4.166 15 C -0.096 4.096 16 C -0.155 4.155 17 C -0.166 4.166 18 C -0.160 4.160 19 C -0.155 4.155 20 N -0.389 5.389 21 C -0.332 4.332 22 H 0.086 0.914 23 C -0.252 4.252 24 N -0.634 5.634 25 Si 0.770 3.230 26 H -0.216 1.216 27 H -0.233 1.233 28 H -0.176 1.176 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.249 0.751 39 H 0.114 0.886 40 H 0.124 0.876 41 H 0.256 0.744 42 H 0.137 0.863 43 H 0.132 0.868 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.091 0.909 50 H 0.089 0.911 51 H 0.087 0.913 52 H 0.101 0.899 53 H 0.196 0.804 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.933 -23.365 2.985 27.367 hybrid contribution 1.471 0.213 -0.396 1.538 sum -12.462 -23.152 2.589 26.420 Atomic orbital electron populations 1.21853 0.93725 1.02199 1.02112 1.21604 0.96136 0.96360 0.98509 1.21726 1.01567 0.95960 0.99974 1.20701 0.82639 0.92876 0.97246 0.92343 1.21730 0.98667 0.91390 0.88645 1.45966 1.48431 1.10863 1.30960 1.20593 0.81071 0.82328 0.86112 1.90649 1.37815 1.68144 1.48399 1.21012 1.00367 0.83761 0.97571 1.45778 1.49660 1.09915 1.31689 1.21412 0.80134 0.88800 0.79904 1.90710 1.36677 1.79511 1.38659 1.21911 1.03463 0.89400 1.01834 1.21525 0.94890 0.96088 0.97100 1.22389 0.95790 0.96891 1.00411 1.22546 0.98617 0.94874 1.00530 1.22363 0.94050 0.97820 1.01766 1.22214 0.98060 0.92356 1.02831 1.42812 1.02038 1.19316 1.74697 1.18919 0.88933 0.95816 1.29562 0.91391 1.25298 0.97456 0.99641 1.02828 1.69847 1.06835 1.32435 1.54284 0.85636 0.78320 0.81475 0.77575 1.21650 1.23334 1.17630 0.92595 0.92108 0.91629 0.91979 0.93452 0.93042 0.94278 0.89209 0.91911 0.75075 0.88597 0.87595 0.74436 0.86317 0.86841 0.92040 0.92336 0.93560 0.91869 0.91486 0.90905 0.91085 0.91257 0.89939 0.80386 0.93771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.84 71.98 0.64 -2.51 16 2 C -0.10 -3.06 2.69 -10.80 -0.03 -3.09 16 3 C -0.13 -4.61 8.26 71.98 0.59 -4.01 16 4 C 0.17 5.48 2.18 44.99 0.10 5.58 16 5 H 0.06 1.94 8.08 -2.39 -0.02 1.92 16 6 C 0.12 3.22 4.73 86.38 0.41 3.63 16 7 N -0.71 -18.88 5.39 -463.05 -2.49 -21.38 16 8 C 0.51 13.23 7.90 87.66 0.69 13.92 16 9 O -0.57 -16.82 15.67 -3.02 -0.05 -16.87 16 10 C 0.10 2.30 6.15 85.63 0.53 2.82 16 11 N -0.71 -14.70 5.53 -466.78 -2.58 -17.28 16 12 C 0.51 10.99 7.61 87.66 0.67 11.66 16 13 O -0.58 -17.06 14.78 -3.05 -0.05 -17.11 16 14 C -0.13 -1.72 4.83 29.85 0.14 -1.58 16 15 C -0.08 -1.20 2.55 -10.07 -0.03 -1.23 16 16 C -0.12 -2.16 5.40 31.70 0.17 -1.99 16 17 C -0.13 -1.85 6.91 31.91 0.22 -1.63 16 18 C -0.12 -1.33 6.83 31.67 0.22 -1.11 16 19 C -0.12 -1.25 6.46 31.32 0.20 -1.05 16 20 N -0.75 -29.83 4.24 -322.93 -1.37 -31.20 16 21 C -0.20 -10.14 8.05 84.04 0.68 -9.46 16 22 H 0.07 3.77 7.63 -2.91 -0.02 3.75 16 23 C -0.06 -3.36 5.50 84.86 0.47 -2.90 16 24 N -0.98 -60.35 13.97 21.65 0.30 -60.05 16 25 Si 0.94 43.78 27.74 68.60 1.90 45.68 16 26 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 27 H -0.31 -14.90 7.11 99.48 0.71 -14.20 16 28 H -0.25 -10.42 6.51 99.48 0.65 -9.77 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.29 6.55 -2.39 -0.02 1.28 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.05 2.01 6.01 -2.39 -0.01 1.99 16 34 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.09 2.16 6.71 -2.38 -0.02 2.14 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 38 H 0.41 11.29 8.14 -92.71 -0.75 10.53 16 39 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.42 7.60 7.44 -92.71 -0.69 6.91 16 42 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.11 1.16 8.02 -2.38 -0.02 1.14 16 44 H 0.06 1.19 7.95 -2.39 -0.02 1.17 16 45 H 0.06 1.08 7.77 -2.38 -0.02 1.06 16 46 H 0.05 1.10 7.63 -2.39 -0.02 1.08 16 47 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 50 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 51 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 52 H 0.08 0.63 7.67 -2.39 -0.02 0.61 16 53 H 0.36 14.53 5.66 -92.71 -0.52 14.01 16 54 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -68.03 420.48 0.20 -67.82 By element: Atomic # 1 Polarization: 44.47 SS G_CDS: -1.13 Total: 43.34 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 5.67 Total: 7.05 kcal Atomic # 7 Polarization: -123.76 SS G_CDS: -6.14 Total: -129.91 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.09 Total: -33.98 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.90 Total: 45.68 kcal Total: -68.03 0.20 -67.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753840264.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.193 kcal (2) G-P(sol) polarization free energy of solvation -68.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds