Wall clock time and date at job start Tue Mar 31 2020 22:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47075 * 2 1 4 4 C 1.52998 * 109.47270 * 174.24505 * 3 2 1 5 5 H 1.09002 * 109.46909 * 317.45324 * 4 3 2 6 6 C 1.50695 * 109.47407 * 197.45487 * 4 3 2 7 7 O 1.21283 * 119.99789 * 347.32467 * 6 4 3 8 8 N 1.34776 * 120.00236 * 167.33111 * 6 4 3 9 9 C 1.46499 * 120.00073 * 4.54889 * 8 6 4 10 10 C 1.46506 * 120.00023 * 184.54849 * 8 6 4 11 11 C 1.53935 * 113.73428 * 218.76616 * 10 8 6 12 12 N 1.48180 * 86.10034 * 221.95673 * 11 10 8 13 13 C 1.46902 * 111.07232 * 137.51984 * 12 11 10 14 14 C 1.50700 * 109.46896 * 70.56444 * 13 12 11 15 15 O 1.21291 * 120.00463 * 0.02562 * 14 13 12 16 16 N 1.34784 * 119.99841 * 180.02562 * 14 13 12 17 17 C 1.37096 * 119.99928 * 180.02562 * 16 14 13 18 18 H 1.07996 * 119.99869 * 0.02562 * 17 16 14 19 19 C 1.38951 * 119.99739 * 179.97438 * 17 16 14 20 20 N 1.31411 * 120.00411 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99601 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47634 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47109 * 120.00648 * 21 19 17 24 24 H 1.48507 * 109.47166 * 240.00116 * 21 19 17 25 25 C 1.47962 * 90.80179 * 24.59985 * 12 11 10 26 26 C 1.53001 * 109.47379 * 77.44847 * 4 3 2 27 27 C 1.53001 * 109.47237 * 292.73568 * 26 4 3 28 28 C 1.53001 * 109.46552 * 52.73354 * 26 4 3 29 29 H 1.08995 * 109.47177 * 299.99744 * 1 2 3 30 30 H 1.09002 * 109.47227 * 59.99864 * 1 2 3 31 31 H 1.09003 * 109.46993 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46728 * 240.00311 * 2 1 3 33 33 H 1.09002 * 109.47227 * 120.00136 * 2 1 3 34 34 H 1.08996 * 109.47273 * 54.24160 * 3 2 1 35 35 H 1.08996 * 109.47292 * 294.24414 * 3 2 1 36 36 H 1.09002 * 109.47306 * 93.14557 * 9 8 6 37 37 H 1.08998 * 109.47185 * 213.14653 * 9 8 6 38 38 H 1.09001 * 109.46828 * 333.14540 * 9 8 6 39 39 H 1.09002 * 112.93635 * 350.33101 * 10 8 6 40 40 H 1.09004 * 113.75699 * 336.24025 * 11 10 8 41 41 H 1.09000 * 113.76079 * 107.60185 * 11 10 8 42 42 H 1.08995 * 109.47515 * 190.56671 * 13 12 11 43 43 H 1.09001 * 109.46855 * 310.56869 * 13 12 11 44 44 H 0.97002 * 119.99803 * 359.97438 * 16 14 13 45 45 H 0.96997 * 120.00365 * 179.97438 * 20 19 17 46 46 H 1.08995 * 113.76033 * 221.08266 * 25 12 11 47 47 H 1.08998 * 113.85768 * 89.73009 * 25 12 11 48 48 H 1.09000 * 109.47098 * 172.72828 * 26 4 3 49 49 H 1.09001 * 109.47165 * 84.44847 * 27 26 4 50 50 H 1.09002 * 109.46783 * 204.45028 * 27 26 4 51 51 H 1.08996 * 109.46575 * 324.44819 * 27 26 4 52 52 H 1.09003 * 109.47594 * 56.75000 * 28 26 4 53 53 H 1.09003 * 109.46989 * 176.74823 * 28 26 4 54 54 H 1.09005 * 109.47191 * 296.74779 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5631 1.4450 0.1446 5 1 3.8579 0.7121 0.8957 6 6 4.0251 2.8146 0.5708 7 8 3.2608 3.7550 0.5210 8 7 5.2874 2.9945 1.0073 9 6 6.2397 1.8817 0.9738 10 6 5.7074 4.3029 1.5152 11 6 7.1390 4.6954 1.1076 12 7 7.2908 5.1889 2.4966 13 6 8.5979 4.8121 3.0511 14 6 9.6808 5.6098 2.3714 15 8 9.3921 6.4135 1.5100 16 7 10.9701 5.4302 2.7205 17 6 11.9552 6.1563 2.1025 18 1 11.6980 6.8724 1.3362 19 6 13.2844 5.9714 2.4629 20 7 13.5973 5.1003 3.3957 21 14 14.6265 6.9612 1.6212 22 1 14.0165 7.8673 0.6152 23 1 15.3566 7.7660 2.6334 24 1 15.5736 6.0376 0.9464 25 6 6.2315 4.2667 2.9621 26 6 4.2035 1.0854 -1.1976 27 6 3.8815 -0.3699 -1.5428 28 6 3.6492 2.0032 -2.2891 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5949 1.9852 0.8339 35 1 1.7633 1.9257 -0.9370 36 1 6.8035 1.9139 0.0415 37 1 6.9259 1.9652 1.8165 38 1 5.6980 0.9380 1.0384 39 1 4.9700 5.0852 1.3351 40 1 7.7775 3.8439 0.8719 41 1 7.1812 5.4816 0.3539 42 1 8.6118 5.0187 4.1212 43 1 8.7706 3.7490 2.8841 44 1 11.2010 4.7877 3.4096 45 1 14.5252 4.9710 3.6470 46 1 5.5500 4.7111 3.6874 47 1 6.6023 3.2892 3.2705 48 1 5.2840 1.2125 -1.1302 49 1 2.9057 -0.4214 -2.0258 50 1 4.6426 -0.7599 -2.2186 51 1 3.8669 -0.9651 -0.6298 52 1 3.8277 3.0429 -2.0149 53 1 4.1473 1.7860 -3.2340 54 1 2.5776 1.8344 -2.3961 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754583128.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:06 Heat of formation + Delta-G solvation = -64.444529 kcal Electronic energy + Delta-G solvation = -30638.948006 eV Core-core repulsion = 26610.909885 eV Total energy + Delta-G solvation = -4028.038121 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.01700 -40.82557 -39.54525 -38.01492 -36.19935 -35.84166 -34.16714 -33.31978 -31.56809 -30.24359 -28.25377 -28.04214 -27.43243 -27.06384 -26.30780 -24.74551 -22.04294 -21.99851 -21.02303 -20.33622 -19.96803 -19.70418 -18.23284 -17.83423 -17.53124 -17.37374 -16.81932 -16.57685 -16.11633 -15.94042 -15.64308 -15.42396 -15.01610 -14.91058 -14.53744 -14.32219 -14.12888 -14.02548 -13.84371 -13.60103 -13.54803 -13.52456 -13.29169 -13.23165 -13.17855 -12.94308 -12.86790 -12.66630 -12.42655 -12.37826 -12.18602 -12.13903 -12.07365 -11.86328 -11.71219 -11.63092 -11.52322 -11.29480 -10.84292 -10.66722 -10.36309 -10.02944 -9.77837 -9.68661 -8.48324 -5.96732 1.34990 1.40810 1.54559 1.57403 1.86655 2.02879 2.27967 2.81545 3.18004 3.22762 3.42474 3.55292 3.71115 3.72802 3.80756 4.05460 4.08943 4.17915 4.22226 4.27169 4.30498 4.33641 4.38071 4.40828 4.50391 4.53551 4.61494 4.62181 4.69445 4.76008 4.79306 4.83488 4.86641 4.90870 4.97459 5.01617 5.04826 5.13887 5.15125 5.21024 5.29394 5.31218 5.39062 5.40221 5.42660 5.44588 5.53464 5.66591 5.84084 6.03661 6.37252 6.58761 7.11590 7.14706 7.54194 8.10431 8.69185 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.022878 B = 0.002032 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.582900 B =13777.512589 C =14167.384829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.135 4.135 3 C -0.103 4.103 4 C -0.095 4.095 5 H 0.120 0.880 6 C 0.514 3.486 7 O -0.583 6.583 8 N -0.604 5.604 9 C 0.063 3.937 10 C 0.123 3.877 11 C 0.015 3.985 12 N -0.480 5.480 13 C 0.027 3.973 14 C 0.439 3.561 15 O -0.620 6.620 16 N -0.572 5.572 17 C -0.332 4.332 18 H 0.076 0.924 19 C -0.011 4.011 20 N -0.918 5.918 21 Si 0.991 3.009 22 H -0.276 1.276 23 H -0.271 1.271 24 H -0.269 1.269 25 C 0.003 3.997 26 C -0.086 4.086 27 C -0.146 4.146 28 C -0.152 4.152 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.111 0.889 43 H 0.085 0.915 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.062 0.938 51 H 0.075 0.925 52 H 0.025 0.975 53 H 0.064 0.936 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.411 -19.332 -4.462 28.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.172 4.172 3 C -0.141 4.141 4 C -0.116 4.116 5 H 0.138 0.862 6 C 0.305 3.695 7 O -0.462 6.462 8 N -0.335 5.335 9 C -0.079 4.079 10 C 0.018 3.982 11 C -0.115 4.115 12 N -0.203 5.203 13 C -0.104 4.104 14 C 0.227 3.773 15 O -0.506 6.506 16 N -0.210 5.210 17 C -0.462 4.462 18 H 0.094 0.906 19 C -0.211 4.211 20 N -0.559 5.559 21 Si 0.815 3.185 22 H -0.201 1.201 23 H -0.196 1.196 24 H -0.194 1.194 25 C -0.126 4.126 26 C -0.105 4.105 27 C -0.203 4.203 28 C -0.209 4.209 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.129 0.871 43 H 0.102 0.898 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.098 0.902 49 H 0.088 0.912 50 H 0.081 0.919 51 H 0.094 0.906 52 H 0.044 0.956 53 H 0.083 0.917 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.832 -17.669 -4.823 27.738 hybrid contribution 1.267 0.139 -0.001 1.274 sum -19.565 -17.530 -4.824 26.709 Atomic orbital electron populations 1.21791 0.96190 1.01933 1.01323 1.22017 0.95770 0.95316 1.04069 1.21522 0.92265 0.98080 1.02205 1.21593 0.97726 0.92450 0.99803 0.86226 1.21446 0.80875 0.91981 0.75244 1.90669 1.55030 1.44920 1.55629 1.47975 1.11653 1.11332 1.62567 1.22185 0.93474 0.89198 1.03021 1.22816 0.95156 0.86275 0.93919 1.24173 0.95364 0.98918 0.93061 1.68362 1.03050 1.44797 1.04093 1.22338 0.89019 0.98211 1.00874 1.20748 0.83921 0.86604 0.86064 1.90508 1.82878 1.40579 1.36683 1.41921 1.04930 1.37739 1.36369 1.19659 0.86908 1.20046 1.19581 0.90595 1.26001 0.99791 0.98118 0.97216 1.69664 1.20467 1.35113 1.30675 0.84900 0.77510 0.78023 0.78078 1.20069 1.19636 1.19386 1.24495 0.94019 0.96991 0.97086 1.21155 1.00261 0.97158 0.91920 1.22136 1.02203 0.93346 1.02619 1.21986 1.01838 0.98154 0.98951 0.93709 0.93180 0.91696 0.88746 0.91215 0.93597 0.91761 0.91775 0.90365 0.87481 0.87952 0.90133 0.91800 0.87102 0.89766 0.76896 0.91255 0.88078 0.88268 0.90169 0.91213 0.91881 0.90632 0.95561 0.91688 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 71.98 0.71 -0.96 16 2 C -0.13 -1.35 5.02 30.59 0.15 -1.20 16 3 C -0.10 -1.62 4.02 30.59 0.12 -1.50 16 4 C -0.09 -1.38 1.21 -11.54 -0.01 -1.40 16 5 H 0.12 1.14 6.49 -2.39 -0.02 1.13 16 6 C 0.51 11.89 5.94 87.66 0.52 12.42 16 7 O -0.58 -18.78 15.32 -3.04 -0.05 -18.83 16 8 N -0.60 -12.71 3.09 -826.86 -2.56 -15.26 16 9 C 0.06 0.85 7.63 127.77 0.97 1.82 16 10 C 0.12 3.29 4.41 46.56 0.21 3.50 16 11 C 0.01 0.46 6.25 86.37 0.54 1.00 16 12 N -0.48 -15.84 5.95 -912.31 -5.42 -21.26 16 13 C 0.03 0.92 5.31 85.56 0.45 1.37 16 14 C 0.44 20.91 7.59 87.66 0.67 21.58 16 15 O -0.62 -34.95 15.13 -3.06 -0.05 -35.00 16 16 N -0.57 -29.12 5.29 -306.98 -1.62 -30.74 16 17 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 18 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 19 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 20 N -0.92 -48.90 13.05 21.66 0.28 -48.61 16 21 Si 0.99 42.88 29.55 68.60 2.03 44.91 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 25 C 0.00 0.08 7.51 86.41 0.65 0.73 16 26 C -0.09 -1.06 2.41 -10.79 -0.03 -1.08 16 27 C -0.15 -1.06 7.73 71.98 0.56 -0.50 16 28 C -0.15 -2.48 8.37 71.98 0.60 -1.88 16 29 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.09 0.71 4.21 -2.39 -0.01 0.70 16 33 H 0.07 0.58 8.03 -2.39 -0.02 0.56 16 34 H 0.05 0.93 7.69 -2.39 -0.02 0.92 16 35 H 0.06 1.16 5.48 -2.39 -0.01 1.15 16 36 H 0.06 0.87 7.44 -2.39 -0.02 0.86 16 37 H 0.08 0.98 6.49 -2.39 -0.02 0.97 16 38 H 0.11 0.81 5.78 -2.39 -0.01 0.80 16 39 H 0.10 3.28 7.20 -2.39 -0.02 3.26 16 40 H 0.08 2.35 6.52 -2.38 -0.02 2.34 16 41 H 0.06 2.46 8.10 -2.39 -0.02 2.44 16 42 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 43 H 0.08 2.31 7.70 -2.39 -0.02 2.29 16 44 H 0.40 18.97 7.90 -92.71 -0.73 18.23 16 45 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 46 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.10 1.80 6.46 -2.39 -0.02 1.79 16 48 H 0.08 0.98 5.88 -2.39 -0.01 0.96 16 49 H 0.07 0.48 5.86 -2.39 -0.01 0.47 16 50 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 51 H 0.07 0.35 7.22 -2.39 -0.02 0.33 16 52 H 0.03 0.58 7.35 -2.39 -0.02 0.57 16 53 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 54 H 0.07 1.02 6.07 -2.38 -0.01 1.01 16 Total: -1.00 -74.74 407.50 0.19 -74.55 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: 0.17 Total: 34.54 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 7.40 Total: 15.70 kcal Atomic # 7 Polarization: -106.56 SS G_CDS: -9.32 Total: -115.88 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: -0.09 Total: -53.82 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -74.74 0.19 -74.55 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754583128.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.105 kcal (2) G-P(sol) polarization free energy of solvation -74.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds