Wall clock time and date at job start Tue Mar 31 2020 22:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47240 * 2 1 4 4 C 1.52998 * 109.46924 * 186.47395 * 3 2 1 5 5 H 1.09003 * 109.47513 * 54.39783 * 4 3 2 6 6 C 1.50703 * 109.47178 * 174.39820 * 4 3 2 7 7 O 1.21287 * 119.99661 * 22.49585 * 6 4 3 8 8 N 1.34776 * 120.00298 * 202.49721 * 6 4 3 9 9 C 1.46499 * 119.99696 * 354.61641 * 8 6 4 10 10 C 1.46496 * 119.99972 * 174.60969 * 8 6 4 11 11 C 1.53512 * 114.17319 * 120.00297 * 10 8 6 12 12 N 1.47485 * 87.93287 * 87.62038 * 11 10 8 13 13 C 1.46895 * 110.99846 * 138.70279 * 12 11 10 14 14 C 1.50704 * 109.46943 * 170.00031 * 13 12 11 15 15 O 1.21295 * 120.00074 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99958 * 180.02562 * 14 13 12 17 17 C 1.37097 * 119.99941 * 180.02562 * 16 14 13 18 18 H 1.07994 * 119.99678 * 359.97438 * 17 16 14 19 19 C 1.38948 * 119.99964 * 180.02562 * 17 16 14 20 20 N 1.31413 * 119.99823 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00030 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46917 * 89.99901 * 21 19 17 23 23 H 1.48503 * 109.47147 * 209.99933 * 21 19 17 24 24 H 1.48501 * 109.46943 * 330.00003 * 21 19 17 25 25 C 1.47478 * 87.83263 * 27.01144 * 12 11 10 26 26 C 1.53006 * 109.47385 * 294.39540 * 4 3 2 27 27 C 1.53003 * 109.46902 * 326.79712 * 26 4 3 28 28 C 1.53001 * 109.46832 * 86.79209 * 26 4 3 29 29 H 1.09002 * 109.47184 * 300.00443 * 1 2 3 30 30 H 1.08998 * 109.46919 * 60.00043 * 1 2 3 31 31 H 1.09003 * 109.47490 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47184 * 239.99556 * 2 1 3 33 33 H 1.08998 * 109.46919 * 119.99957 * 2 1 3 34 34 H 1.09003 * 109.47006 * 66.47368 * 3 2 1 35 35 H 1.08997 * 109.46992 * 306.47303 * 3 2 1 36 36 H 1.09002 * 109.46728 * 272.53582 * 9 8 6 37 37 H 1.08997 * 109.47320 * 32.53567 * 9 8 6 38 38 H 1.09004 * 109.47240 * 152.54288 * 9 8 6 39 39 H 1.08998 * 113.38437 * 346.92341 * 10 8 6 40 40 H 1.08998 * 113.47207 * 332.85700 * 11 10 8 41 41 H 1.08989 * 113.47987 * 202.39181 * 11 10 8 42 42 H 1.09009 * 109.46989 * 50.00809 * 13 12 11 43 43 H 1.08989 * 109.47757 * 290.00422 * 13 12 11 44 44 H 0.97001 * 119.99580 * 0.02562 * 16 14 13 45 45 H 0.97000 * 119.99702 * 180.02562 * 20 19 17 46 46 H 1.09002 * 113.47475 * 87.75912 * 25 12 11 47 47 H 1.09000 * 113.48129 * 218.21772 * 25 12 11 48 48 H 1.08998 * 109.47141 * 206.79373 * 26 4 3 49 49 H 1.09003 * 109.46770 * 186.89414 * 27 26 4 50 50 H 1.09000 * 109.46777 * 306.88982 * 27 26 4 51 51 H 1.09002 * 109.47284 * 66.89197 * 27 26 4 52 52 H 1.09004 * 109.46928 * 58.82675 * 28 26 4 53 53 H 1.08999 * 109.46535 * 178.82300 * 28 26 4 54 54 H 1.08997 * 109.47220 * 298.82841 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5613 1.4455 -0.1626 5 1 3.8326 0.8798 -1.0540 6 6 4.0490 2.8647 -0.3007 7 8 3.3753 3.7811 0.1206 8 7 5.2336 3.1157 -0.8924 9 6 6.1010 2.0059 -1.2950 10 6 5.6538 4.4983 -1.1330 11 6 6.9663 4.8865 -0.4379 12 7 7.6820 4.3803 -1.6240 13 6 8.7935 5.2693 -1.9873 14 6 9.6455 4.6048 -3.0378 15 8 9.3550 3.4995 -3.4443 16 7 10.7303 5.2386 -3.5257 17 6 11.5051 4.6343 -4.4818 18 1 11.2463 3.6502 -4.8436 19 6 12.6237 5.2875 -4.9844 20 7 12.9393 6.4843 -4.5429 21 14 13.6798 4.4637 -6.2866 22 1 13.1719 4.8222 -7.6351 23 1 15.0849 4.9240 -6.1483 24 1 13.6220 2.9902 -6.1113 25 6 6.4765 4.6912 -2.4147 26 6 4.2069 0.8017 1.0661 27 6 3.3653 1.1117 2.3057 28 6 4.2831 -0.7134 0.8673 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 1.7743 1.9218 0.9423 35 1 1.5852 1.9887 -0.8264 36 1 6.7404 1.7228 -0.4588 37 1 5.4880 1.1537 -1.5885 38 1 6.7200 2.3155 -2.1371 39 1 4.8499 5.2232 -1.0054 40 1 7.1648 4.3120 0.4669 41 1 7.0778 5.9604 -0.2890 42 1 9.3991 5.4734 -1.1041 43 1 8.3968 6.2054 -2.3800 44 1 10.9628 6.1223 -3.2003 45 1 13.7200 6.9405 -4.8940 46 1 6.4572 5.7132 -2.7934 47 1 6.2598 3.9514 -3.1852 48 1 5.2120 1.2016 1.1999 49 1 3.8864 0.7595 3.1960 50 1 3.2085 2.1879 2.3785 51 1 2.4017 0.6086 2.2258 52 1 4.8651 -0.9336 -0.0277 53 1 4.7619 -1.1698 1.7335 54 1 3.2765 -1.1161 0.7542 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754583129.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:09 Heat of formation + Delta-G solvation = -55.997213 kcal Electronic energy + Delta-G solvation = -30698.356474 eV Core-core repulsion = 26670.684656 eV Total energy + Delta-G solvation = -4027.671818 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.10034 -40.81764 -39.60886 -38.12266 -36.06771 -35.77835 -34.04077 -33.27243 -31.60983 -30.25606 -28.28092 -27.99875 -27.36076 -26.83248 -26.24535 -24.82856 -22.21929 -22.04692 -21.08817 -20.35472 -19.91339 -19.43319 -18.30134 -17.78567 -17.35456 -17.17026 -16.74306 -16.44109 -16.38797 -16.10700 -15.60155 -15.44977 -15.02510 -14.78850 -14.66471 -14.49619 -14.14768 -13.97026 -13.76291 -13.61967 -13.50795 -13.39340 -13.26354 -13.03024 -12.96214 -12.91348 -12.61519 -12.48378 -12.41908 -12.40898 -12.18884 -12.06538 -12.04778 -11.91800 -11.78277 -11.69660 -11.48462 -11.36093 -10.86020 -10.64988 -10.35951 -9.99696 -9.74926 -9.63576 -8.45890 -5.94247 1.37836 1.41385 1.54000 1.56292 1.92234 2.07646 2.28668 2.80609 3.20430 3.36038 3.41589 3.54181 3.73302 3.77739 3.83704 4.10054 4.14204 4.18517 4.25533 4.27735 4.31794 4.36696 4.41825 4.47374 4.51866 4.56151 4.62208 4.64338 4.70623 4.78511 4.80044 4.83087 4.84742 4.91061 4.98566 5.06091 5.09406 5.13692 5.15898 5.22586 5.29384 5.33106 5.36743 5.41526 5.42838 5.53325 5.58601 5.65680 5.84963 6.06376 6.42470 6.61767 7.14123 7.14282 7.58371 8.14376 8.71544 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.022617 B = 0.002049 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.690150 B =13663.070044 C =14119.991663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.128 4.128 3 C -0.099 4.099 4 C -0.098 4.098 5 H 0.107 0.893 6 C 0.517 3.483 7 O -0.578 6.578 8 N -0.589 5.589 9 C 0.084 3.916 10 C 0.120 3.880 11 C -0.007 4.007 12 N -0.460 5.460 13 C 0.020 3.980 14 C 0.445 3.555 15 O -0.615 6.615 16 N -0.577 5.577 17 C -0.330 4.330 18 H 0.078 0.922 19 C -0.015 4.015 20 N -0.922 5.922 21 Si 0.992 3.008 22 H -0.271 1.271 23 H -0.272 1.272 24 H -0.273 1.273 25 C -0.005 4.005 26 C -0.079 4.079 27 C -0.150 4.150 28 C -0.158 4.158 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.084 0.916 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.093 0.907 47 H 0.074 0.926 48 H 0.061 0.939 49 H 0.060 0.940 50 H 0.038 0.962 51 H 0.075 0.925 52 H 0.060 0.940 53 H 0.062 0.938 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.624 -9.463 12.195 25.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.137 4.137 4 C -0.119 4.119 5 H 0.125 0.875 6 C 0.307 3.693 7 O -0.458 6.458 8 N -0.319 5.319 9 C -0.058 4.058 10 C 0.014 3.986 11 C -0.136 4.136 12 N -0.182 5.182 13 C -0.112 4.112 14 C 0.232 3.768 15 O -0.500 6.500 16 N -0.215 5.215 17 C -0.460 4.460 18 H 0.096 0.904 19 C -0.214 4.214 20 N -0.563 5.563 21 Si 0.816 3.184 22 H -0.197 1.197 23 H -0.197 1.197 24 H -0.198 1.198 25 C -0.135 4.135 26 C -0.098 4.098 27 C -0.207 4.207 28 C -0.214 4.214 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.131 0.869 40 H 0.103 0.897 41 H 0.118 0.882 42 H 0.124 0.876 43 H 0.102 0.898 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.111 0.889 47 H 0.093 0.907 48 H 0.079 0.921 49 H 0.079 0.921 50 H 0.057 0.943 51 H 0.094 0.906 52 H 0.079 0.921 53 H 0.081 0.919 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.665 -10.271 12.077 26.046 hybrid contribution 0.980 1.455 -0.726 1.898 sum -19.685 -8.816 11.351 24.374 Atomic orbital electron populations 1.21793 0.95672 1.02073 1.01610 1.21893 0.95994 0.95350 1.03273 1.21512 0.91797 0.98023 1.02403 1.21573 0.97780 0.91077 1.01500 0.87511 1.21299 0.79708 0.92434 0.75853 1.90640 1.57240 1.48146 1.49745 1.47548 1.18950 1.06293 1.59121 1.21903 0.94160 0.88334 1.01441 1.21973 0.96204 0.84780 0.95601 1.24338 0.92351 1.01250 0.95690 1.68837 1.02027 1.42962 1.04398 1.22398 0.95246 0.95178 0.98361 1.20725 0.83105 0.87064 0.85898 1.90474 1.73221 1.22413 1.63901 1.41958 1.23995 1.18783 1.36799 1.19636 1.06870 1.02440 1.17032 0.90356 1.26028 0.98425 0.96419 1.00578 1.69674 1.28397 1.13772 1.44438 0.84941 0.77354 0.78209 0.77924 1.19682 1.19650 1.19762 1.24314 0.90098 1.01933 0.97117 1.20977 0.98630 0.97177 0.93049 1.22005 1.00817 1.00865 0.96977 1.22205 1.03779 0.93045 1.02397 0.92898 0.93335 0.91703 0.91220 0.89510 0.91327 0.93314 0.92459 0.89571 0.90757 0.86930 0.89660 0.88234 0.87593 0.89765 0.77122 0.91402 0.88866 0.90711 0.92099 0.92121 0.94324 0.90576 0.92076 0.91942 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 71.98 0.71 -1.01 16 2 C -0.13 -1.48 4.27 30.59 0.13 -1.35 16 3 C -0.10 -1.67 3.56 30.59 0.11 -1.56 16 4 C -0.10 -1.73 1.41 -11.54 -0.02 -1.74 16 5 H 0.11 1.61 6.06 -2.39 -0.01 1.60 16 6 C 0.52 12.69 6.60 87.66 0.58 13.27 16 7 O -0.58 -17.84 15.72 -3.05 -0.05 -17.89 16 8 N -0.59 -14.26 3.11 -821.60 -2.56 -16.82 16 9 C 0.08 1.94 8.83 127.77 1.13 3.06 16 10 C 0.12 2.95 4.64 45.45 0.21 3.16 16 11 C -0.01 -0.15 7.31 83.57 0.61 0.46 16 12 N -0.46 -14.03 4.35 -932.59 -4.05 -18.08 16 13 C 0.02 0.66 5.30 85.56 0.45 1.11 16 14 C 0.44 20.86 7.85 87.66 0.69 21.55 16 15 O -0.61 -33.50 16.01 -3.08 -0.05 -33.55 16 16 N -0.58 -29.42 5.29 -306.98 -1.62 -31.04 16 17 C -0.33 -18.68 9.68 84.04 0.81 -17.86 16 18 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 19 C -0.02 -0.80 5.50 84.93 0.47 -0.34 16 20 N -0.92 -49.70 13.05 21.66 0.28 -49.41 16 21 Si 0.99 42.88 29.55 68.60 2.03 44.91 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 25 C 0.00 -0.13 6.72 83.57 0.56 0.43 16 26 C -0.08 -1.21 2.45 -10.79 -0.03 -1.24 16 27 C -0.15 -2.28 7.76 71.98 0.56 -1.72 16 28 C -0.16 -1.74 8.78 71.98 0.63 -1.11 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 0.84 4.00 -2.39 -0.01 0.83 16 34 H 0.07 1.31 5.91 -2.39 -0.01 1.29 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 1.31 7.89 -2.39 -0.02 1.30 16 37 H 0.09 1.54 5.96 -2.39 -0.01 1.52 16 38 H 0.07 2.19 5.59 -2.39 -0.01 2.18 16 39 H 0.11 2.77 7.34 -2.39 -0.02 2.75 16 40 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.10 1.93 7.91 -2.39 -0.02 1.91 16 42 H 0.11 3.15 8.08 -2.38 -0.02 3.13 16 43 H 0.08 2.41 7.30 -2.39 -0.02 2.39 16 44 H 0.40 19.14 7.90 -92.71 -0.73 18.40 16 45 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 46 H 0.09 2.26 7.42 -2.39 -0.02 2.24 16 47 H 0.07 2.30 7.29 -2.39 -0.02 2.28 16 48 H 0.06 1.10 7.19 -2.39 -0.02 1.08 16 49 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.04 0.76 7.70 -2.39 -0.02 0.75 16 51 H 0.08 0.96 5.18 -2.39 -0.01 0.95 16 52 H 0.06 0.66 8.09 -2.38 -0.02 0.64 16 53 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 54 H 0.08 0.73 4.50 -2.39 -0.01 0.72 16 Total: -1.00 -70.08 410.90 1.76 -68.31 By element: Atomic # 1 Polarization: 38.30 SS G_CDS: 0.17 Total: 38.47 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 7.61 Total: 15.10 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -7.95 Total: -115.35 kcal Atomic # 8 Polarization: -51.34 SS G_CDS: -0.10 Total: -51.44 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -70.08 1.76 -68.31 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754583129.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.316 kcal (2) G-P(sol) polarization free energy of solvation -70.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds