Wall clock time and date at job start Tue Mar 31 2020 22:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00122 * 2 1 3 5 5 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 6 6 C 1.52997 * 109.47127 * 180.02562 * 4 2 1 7 7 C 1.53001 * 109.47049 * 174.99763 * 6 4 2 8 8 N 1.46504 * 109.46813 * 180.02562 * 7 6 4 9 9 C 1.46500 * 119.99797 * 269.99742 * 8 7 6 10 10 C 1.34774 * 120.00245 * 90.00521 * 8 7 6 11 11 O 1.21279 * 119.99841 * 359.97438 * 10 8 7 12 12 C 1.50703 * 119.99981 * 179.97438 * 10 8 7 13 13 C 1.53001 * 109.46891 * 179.97438 * 12 10 8 14 14 H 1.09000 * 109.60188 * 305.00115 * 13 12 10 15 15 C 1.53347 * 109.59755 * 184.67404 * 13 12 10 16 16 C 1.53072 * 108.42109 * 172.71256 * 15 13 12 17 17 C 1.50180 * 109.88783 * 48.90344 * 16 15 13 18 18 O 1.21286 * 118.24280 * 162.43845 * 17 16 15 19 19 N 1.33347 * 123.50988 * 342.41291 * 17 16 15 20 20 C 1.45822 * 124.16974 * 2.04524 * 19 17 16 21 21 N 1.46492 * 109.47363 * 59.99700 * 4 2 1 22 22 C 1.36940 * 120.00114 * 275.00271 * 21 4 2 23 23 H 1.07993 * 119.99751 * 359.97438 * 22 21 4 24 24 C 1.38813 * 120.00020 * 179.97438 * 22 21 4 25 25 N 1.31617 * 119.99798 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00034 * 0.02562 * 24 22 21 27 27 H 1.48505 * 109.47206 * 89.99601 * 26 24 22 28 28 H 1.48500 * 109.47401 * 209.99845 * 26 24 22 29 29 H 1.48504 * 109.47084 * 329.99804 * 26 24 22 30 30 H 1.09001 * 109.46832 * 300.00199 * 1 2 3 31 31 H 1.09002 * 109.47153 * 60.00008 * 1 2 3 32 32 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47289 * 240.00075 * 2 1 3 34 34 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47230 * 299.99295 * 3 2 1 36 36 H 1.09001 * 109.47375 * 60.00133 * 3 2 1 37 37 H 1.08998 * 109.46934 * 294.99762 * 6 4 2 38 38 H 1.09006 * 109.47500 * 54.99635 * 6 4 2 39 39 H 1.08998 * 109.47252 * 299.99805 * 7 6 4 40 40 H 1.08998 * 109.47250 * 59.99881 * 7 6 4 41 41 H 1.08997 * 109.47273 * 89.99962 * 9 8 7 42 42 H 1.09003 * 109.47549 * 210.00258 * 9 8 7 43 43 H 1.09004 * 109.47464 * 330.00564 * 9 8 7 44 44 H 1.08993 * 109.46840 * 299.99992 * 12 10 8 45 45 H 1.09002 * 109.47083 * 59.99452 * 12 10 8 46 46 H 1.08992 * 109.67776 * 292.44545 * 15 13 12 47 47 H 1.08997 * 109.67536 * 52.98832 * 15 13 12 48 48 H 1.09000 * 109.40360 * 169.02398 * 16 15 13 49 49 H 1.09001 * 109.40454 * 288.86370 * 16 15 13 50 50 H 0.97007 * 117.94932 * 182.22912 * 19 17 16 51 51 H 1.08995 * 109.45993 * 220.86158 * 20 19 17 52 52 H 1.09001 * 109.17272 * 101.45949 * 20 19 17 53 53 H 0.97005 * 120.00153 * 94.99794 * 21 4 2 54 54 H 0.97010 * 119.99726 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2074 2.1393 6 6 3.5700 -0.7207 1.2496 7 6 4.0799 -1.3304 2.5570 8 7 5.5449 -1.3292 2.5575 9 6 6.2785 -2.4784 2.0213 10 6 6.2179 -0.2711 3.0514 11 8 5.6106 0.6804 3.4950 12 6 7.7249 -0.2703 3.0524 13 6 8.2337 1.0376 3.6620 14 1 7.8002 1.8830 3.1278 15 6 9.7627 1.0927 3.5585 16 6 10.2280 2.4808 4.0054 17 6 9.5822 2.8398 5.3129 18 8 10.0699 3.7375 5.9666 19 7 8.5010 2.2247 5.7933 20 6 7.8366 1.1046 5.1372 21 7 1.5517 -2.1024 1.2493 22 6 0.3101 -2.3897 1.7505 23 1 -0.3089 -1.5981 2.1461 24 6 -0.1529 -3.6983 1.7501 25 7 -1.3460 -3.9744 2.2323 26 14 0.9181 -5.0677 1.0665 27 1 1.7594 -5.6281 2.1544 28 1 0.0550 -6.1385 0.5066 29 1 1.7914 -4.5250 -0.0050 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8901 36 1 1.6767 1.9563 0.8900 37 1 3.9337 -1.3099 0.4078 38 1 3.9330 0.3032 1.1602 39 1 3.7162 -0.7412 3.3988 40 1 3.7169 -2.3542 2.6464 41 1 6.4604 -2.3290 0.9571 42 1 7.2308 -2.5770 2.5424 43 1 5.6900 -3.3846 2.1654 44 1 8.0882 -1.1119 3.6420 45 1 8.0890 -0.3596 2.0289 46 1 10.2019 0.3328 4.2047 47 1 10.0672 0.9184 2.5265 48 1 11.3114 2.4783 4.1254 49 1 9.9489 3.2166 3.2511 50 1 8.1309 2.5439 6.6312 51 1 6.7564 1.2274 5.2143 52 1 8.1269 0.1772 5.6310 53 1 2.1078 -2.8135 0.8943 54 1 -1.6694 -4.8891 2.2323 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755340013.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:53 Heat of formation + Delta-G solvation = -104.039830 kcal Electronic energy + Delta-G solvation = -30699.648758 eV Core-core repulsion = 26669.893656 eV Total energy + Delta-G solvation = -4029.755102 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.53234 -40.71022 -39.07088 -37.75866 -36.49867 -34.94345 -34.41103 -33.24369 -32.47232 -31.60911 -28.40535 -27.87829 -27.57507 -26.32982 -25.31169 -24.41272 -23.11493 -22.36944 -21.02711 -20.13062 -19.83739 -19.42430 -18.21743 -17.95987 -17.21240 -17.01270 -16.85362 -16.49190 -16.35753 -15.89382 -15.51070 -15.28881 -15.03524 -15.01724 -14.76451 -14.42930 -14.38691 -14.13837 -14.02717 -13.80080 -13.71629 -13.27530 -13.18476 -12.98539 -12.94381 -12.90079 -12.77276 -12.47759 -12.44897 -12.24805 -12.14034 -11.94491 -11.87447 -11.72860 -11.71848 -11.63792 -11.45533 -11.26398 -10.85759 -10.81901 -10.59352 -10.07028 -9.57883 -9.18196 -7.92461 -5.24288 1.40085 1.44861 1.52404 1.60987 1.74826 2.11876 2.35718 2.55577 3.37575 3.53892 3.59517 3.65230 3.73947 3.84462 3.94820 3.99900 4.18666 4.21167 4.33199 4.38727 4.43575 4.46566 4.49856 4.56607 4.64190 4.67630 4.71604 4.77511 4.79533 4.84003 4.85032 4.90509 4.95293 4.99726 5.01838 5.05742 5.11199 5.15872 5.19716 5.21509 5.34133 5.38944 5.39550 5.62450 5.63337 5.73191 5.76142 5.89790 6.30223 6.35843 6.54653 7.17427 7.17802 7.30133 7.92171 8.13549 9.29331 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016204 B = 0.002410 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.581141 B =11613.208859 C =12337.769450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C -0.137 4.137 4 C 0.186 3.814 5 H 0.031 0.969 6 C -0.121 4.121 7 C 0.124 3.876 8 N -0.615 5.615 9 C 0.067 3.933 10 C 0.500 3.500 11 O -0.581 6.581 12 C -0.121 4.121 13 C -0.087 4.087 14 H 0.071 0.929 15 C -0.108 4.108 16 C -0.132 4.132 17 C 0.509 3.491 18 O -0.619 6.619 19 N -0.714 5.714 20 C 0.107 3.893 21 N -0.744 5.744 22 C -0.204 4.204 23 H 0.055 0.945 24 C -0.072 4.072 25 N -0.990 5.990 26 Si 0.951 3.049 27 H -0.278 1.278 28 H -0.307 1.307 29 H -0.247 1.247 30 H 0.029 0.971 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.126 0.874 45 H 0.131 0.869 46 H 0.086 0.914 47 H 0.109 0.891 48 H 0.112 0.888 49 H 0.107 0.893 50 H 0.397 0.603 51 H 0.075 0.925 52 H 0.079 0.921 53 H 0.365 0.635 54 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.311 5.134 -3.356 27.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 C -0.195 4.195 4 C 0.077 3.923 5 H 0.049 0.951 6 C -0.160 4.160 7 C 0.000 4.000 8 N -0.347 5.347 9 C -0.075 4.075 10 C 0.290 3.710 11 O -0.461 6.461 12 C -0.161 4.161 13 C -0.106 4.106 14 H 0.089 0.911 15 C -0.145 4.145 16 C -0.171 4.171 17 C 0.298 3.702 18 O -0.502 6.502 19 N -0.362 5.362 20 C -0.017 4.017 21 N -0.387 5.387 22 C -0.335 4.335 23 H 0.073 0.927 24 C -0.262 4.262 25 N -0.642 5.642 26 Si 0.779 3.221 27 H -0.204 1.204 28 H -0.234 1.234 29 H -0.172 1.172 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.123 0.877 43 H 0.086 0.914 44 H 0.144 0.856 45 H 0.149 0.851 46 H 0.104 0.896 47 H 0.128 0.872 48 H 0.130 0.870 49 H 0.125 0.875 50 H 0.231 0.769 51 H 0.093 0.907 52 H 0.097 0.903 53 H 0.199 0.801 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 27.147 5.991 -2.915 27.953 hybrid contribution -1.037 -0.838 0.392 1.390 sum 26.111 5.153 -2.523 26.734 Atomic orbital electron populations 1.21744 0.96507 1.01539 0.99505 1.21629 0.95360 0.96372 0.99226 1.21821 1.01104 0.95160 1.01398 1.20341 0.92218 0.84316 0.95390 0.95069 1.22057 0.94414 1.01744 0.97833 1.21268 0.79553 1.01422 0.97736 1.48074 1.06261 1.19267 1.61114 1.22137 0.97947 0.87214 1.00228 1.21489 0.91849 0.81329 0.76350 1.90686 1.71575 1.35707 1.48169 1.21774 0.88816 0.99500 1.05980 1.21194 0.96796 0.98350 0.94255 0.91101 1.21734 0.92751 0.95299 1.04763 1.21689 1.02389 1.00310 0.92737 1.20977 0.79831 0.80586 0.88825 1.90731 1.64337 1.33932 1.61218 1.45606 1.28991 1.35025 1.26586 1.21743 0.97792 0.88562 0.93599 1.42756 1.16763 1.04639 1.74502 1.18918 0.92321 0.92842 1.29420 0.92704 1.25461 0.98041 0.99769 1.02973 1.69901 1.20384 1.19179 1.54694 0.85461 0.78471 0.79188 0.78972 1.20377 1.23436 1.17152 0.95151 0.93039 0.93322 0.91749 0.91693 0.92134 0.93781 0.90890 0.90633 0.92701 0.90884 0.90951 0.87691 0.91354 0.85639 0.85079 0.89576 0.87231 0.86989 0.87459 0.76912 0.90712 0.90259 0.80132 0.93814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 8.26 71.98 0.59 -4.53 16 2 C -0.10 -3.42 2.69 -10.79 -0.03 -3.45 16 3 C -0.14 -3.63 8.85 71.98 0.64 -3.00 16 4 C 0.19 6.60 2.02 44.99 0.09 6.69 16 5 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 6 C -0.12 -3.33 4.86 30.59 0.15 -3.18 16 7 C 0.12 3.38 5.34 86.38 0.46 3.84 16 8 N -0.62 -11.63 2.87 -846.75 -2.43 -14.06 16 9 C 0.07 0.69 10.29 127.77 1.31 2.00 16 10 C 0.50 9.33 7.43 87.66 0.65 9.98 16 11 O -0.58 -16.15 13.60 -3.03 -0.04 -16.19 16 12 C -0.12 -0.91 3.73 29.85 0.11 -0.80 16 13 C -0.09 -0.90 1.89 -10.70 -0.02 -0.92 16 14 H 0.07 1.06 7.94 -2.39 -0.02 1.04 16 15 C -0.11 -0.58 5.33 30.73 0.16 -0.42 16 16 C -0.13 -1.46 6.03 29.71 0.18 -1.28 16 17 C 0.51 10.35 7.71 87.72 0.68 11.03 16 18 O -0.62 -18.58 17.78 -3.05 -0.05 -18.63 16 19 N -0.71 -12.62 5.45 -467.18 -2.54 -15.16 16 20 C 0.11 1.54 6.12 86.48 0.53 2.07 16 21 N -0.74 -31.59 4.26 -322.95 -1.37 -32.97 16 22 C -0.20 -10.92 8.05 84.03 0.68 -10.25 16 23 H 0.05 3.31 7.63 -2.91 -0.02 3.29 16 24 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 25 N -0.99 -62.47 13.97 21.65 0.30 -62.16 16 26 Si 0.95 43.15 27.74 68.60 1.90 45.06 16 27 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 28 H -0.31 -14.59 7.11 99.48 0.71 -13.89 16 29 H -0.25 -9.82 6.52 99.48 0.65 -9.17 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.05 2.21 6.01 -2.39 -0.01 2.20 16 33 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 1.53 6.32 -2.39 -0.02 1.52 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 2.02 6.17 -2.38 -0.01 2.01 16 39 H 0.05 1.80 7.42 -2.39 -0.02 1.79 16 40 H 0.07 2.16 7.51 -2.39 -0.02 2.14 16 41 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.10 0.36 6.44 -2.39 -0.02 0.34 16 43 H 0.07 0.84 7.89 -2.38 -0.02 0.82 16 44 H 0.13 0.30 7.37 -2.39 -0.02 0.29 16 45 H 0.13 0.29 8.11 -2.39 -0.02 0.27 16 46 H 0.09 0.31 8.13 -2.39 -0.02 0.29 16 47 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 48 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.40 7.13 8.80 -92.70 -0.82 6.31 16 51 H 0.07 1.51 6.19 -2.39 -0.01 1.49 16 52 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 53 H 0.37 14.64 5.66 -92.70 -0.52 14.11 16 54 H 0.25 15.36 8.31 -92.70 -0.77 14.59 16 Total: -1.00 -79.87 414.00 1.90 -77.97 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: -0.51 Total: 32.00 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 6.65 Total: 4.15 kcal Atomic # 7 Polarization: -118.30 SS G_CDS: -6.05 Total: -124.35 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -0.10 Total: -34.82 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.90 Total: 45.06 kcal Total: -79.87 1.90 -77.97 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755340013.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.067 kcal (2) G-P(sol) polarization free energy of solvation -79.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds