Wall clock time and date at job start Tue Mar 31 2020 23:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46828 * 2 1 4 4 C 1.52995 * 109.47295 * 120.00289 * 2 1 3 5 5 H 1.09004 * 109.47151 * 298.08684 * 4 2 1 6 6 C 1.50698 * 109.46959 * 178.08269 * 4 2 1 7 7 O 1.21276 * 119.99981 * 259.32052 * 6 4 2 8 8 N 1.34779 * 120.00109 * 79.32796 * 6 4 2 9 9 C 1.46495 * 120.00250 * 184.47659 * 8 6 4 10 10 C 1.52995 * 112.94498 * 294.38416 * 9 8 6 11 11 C 1.52999 * 109.47249 * 305.72902 * 10 9 8 12 12 O 1.42897 * 109.47187 * 184.83403 * 11 10 9 13 13 C 1.53945 * 113.74258 * 162.79254 * 9 8 6 14 14 N 1.47813 * 86.03723 * 222.08664 * 13 9 8 15 15 C 1.36936 * 134.45568 * 204.64316 * 14 13 9 16 16 H 1.08003 * 120.00262 * 184.42461 * 15 14 13 17 17 C 1.38807 * 120.00289 * 4.43254 * 15 14 13 18 18 N 1.31625 * 119.99645 * 5.58856 * 17 15 14 19 19 Si 1.86801 * 120.00394 * 185.59101 * 17 15 14 20 20 H 1.48506 * 109.47137 * 94.98522 * 19 17 15 21 21 H 1.48499 * 109.47403 * 214.98179 * 19 17 15 22 22 H 1.48494 * 109.47019 * 334.98708 * 19 17 15 23 23 C 1.47579 * 91.04984 * 24.54886 * 14 13 9 24 24 N 1.46899 * 109.46878 * 58.08343 * 4 2 1 25 25 C 1.47844 * 110.99986 * 55.58477 * 24 4 2 26 26 C 1.54910 * 104.79750 * 146.35934 * 25 24 4 27 27 C 1.55140 * 101.65269 * 322.93242 * 26 25 24 28 28 C 1.47445 * 110.99974 * 176.42391 * 24 4 2 29 29 H 1.09004 * 109.47290 * 299.99673 * 1 2 3 30 30 H 1.09006 * 109.47560 * 59.99480 * 1 2 3 31 31 H 1.08998 * 109.47331 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46741 * 240.01002 * 2 1 3 33 33 H 1.08994 * 109.46897 * 182.40439 * 3 2 1 34 34 H 1.08996 * 109.47226 * 302.40740 * 3 2 1 35 35 H 1.09001 * 109.46698 * 62.41143 * 3 2 1 36 36 H 0.97011 * 119.99680 * 4.47325 * 8 6 4 37 37 H 1.09006 * 109.47043 * 65.72967 * 10 9 8 38 38 H 1.09003 * 109.47308 * 185.72897 * 10 9 8 39 39 H 1.09001 * 109.46959 * 304.83542 * 11 10 9 40 40 H 1.09008 * 109.47000 * 64.83432 * 11 10 9 41 41 H 0.96704 * 113.99773 * 180.02562 * 12 11 10 42 42 H 1.09006 * 113.76880 * 336.34723 * 13 9 8 43 43 H 1.08996 * 113.77210 * 107.74616 * 13 9 8 44 44 H 0.97009 * 119.99702 * 180.02562 * 18 17 15 45 45 H 1.09003 * 113.76818 * 221.15027 * 23 14 13 46 46 H 1.09000 * 113.87038 * 89.77478 * 23 14 13 47 47 H 1.09000 * 110.37491 * 27.52843 * 25 24 4 48 48 H 1.09003 * 110.37039 * 265.19120 * 25 24 4 49 49 H 1.08994 * 110.99441 * 204.83375 * 26 25 24 50 50 H 1.09009 * 110.98523 * 81.02164 * 26 25 24 51 51 H 1.08997 * 110.70423 * 154.03524 * 27 26 25 52 52 H 1.09001 * 110.70204 * 277.26773 * 27 26 25 53 53 H 1.08996 * 109.89052 * 117.33515 * 28 24 4 54 54 H 1.09004 * 109.88897 * 356.15115 * 28 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.7050 -0.1881 2.1389 6 6 3.5462 -0.7625 1.2255 7 8 4.1198 -1.7736 0.8798 8 7 4.2559 0.3242 1.5887 9 6 5.7163 0.3178 1.4727 10 6 6.3849 -0.6878 2.4122 11 6 5.9214 -0.4309 3.8475 12 8 6.6298 -1.2947 4.7386 13 6 6.3477 1.7211 1.5160 14 7 7.2223 1.2494 0.4218 15 6 8.4634 1.6046 -0.0349 16 1 8.8664 1.1383 -0.9218 17 6 9.2037 2.5639 0.6422 18 7 8.7624 3.0522 1.7821 19 14 10.8261 3.1621 -0.0644 20 1 10.5974 4.4025 -0.8483 21 1 11.7744 3.4444 1.0430 22 1 11.3964 2.1152 -0.9497 23 6 6.2223 0.2408 0.0208 24 7 1.5129 -2.0922 1.2724 25 6 1.8592 -2.8142 0.0296 26 6 2.0646 -4.2849 0.4706 27 6 2.7426 -4.1054 1.8544 28 6 2.0520 -2.8462 2.4191 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5137 -0.8901 33 1 3.1290 1.4429 -0.0431 34 1 1.6418 1.9687 -0.8676 35 1 1.7123 1.9437 0.9108 36 1 3.7997 1.1106 1.9270 37 1 6.1088 -1.7001 2.1169 38 1 7.4675 -0.5749 2.3543 39 1 6.1202 0.6074 4.1132 40 1 4.8519 -0.6273 3.9246 41 1 6.3858 -1.1866 5.6680 42 1 5.6660 2.5189 1.2207 43 1 6.8789 1.9354 2.4433 44 1 9.2796 3.7229 2.2550 45 1 6.6537 -0.7247 -0.2435 46 1 5.5031 0.6009 -0.7149 47 1 2.7786 -2.4143 -0.3980 48 1 1.0433 -2.7441 -0.6898 49 1 2.7220 -4.8118 -0.2210 50 1 1.1091 -4.8004 0.5678 51 1 2.5515 -4.9685 2.4920 52 1 3.8137 -3.9390 1.7400 53 1 1.2407 -3.1362 3.0867 54 1 2.7771 -2.2353 2.9567 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755344813.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:22 Heat of formation + Delta-G solvation = -46.515344 kcal Electronic energy + Delta-G solvation = -33007.929904 eV Core-core repulsion = 28980.669251 eV Total energy + Delta-G solvation = -4027.260653 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.07762 -40.47426 -38.24821 -37.73797 -36.67719 -35.16532 -33.68956 -32.09262 -31.84388 -29.78660 -29.09301 -27.93708 -27.07870 -26.87084 -25.01329 -23.38855 -22.50937 -22.42740 -21.47693 -20.53317 -20.08860 -18.81725 -18.40845 -18.27003 -17.41460 -16.87430 -16.81773 -16.68330 -16.12278 -16.02142 -15.62858 -15.31062 -14.99707 -14.82571 -14.46165 -14.41334 -14.22167 -13.92535 -13.71324 -13.40476 -13.34175 -13.20183 -13.14642 -12.90147 -12.89079 -12.80040 -12.55589 -12.39771 -12.25462 -12.09420 -12.07720 -12.05424 -11.87126 -11.77080 -11.74363 -11.50790 -11.41835 -11.35331 -11.00707 -10.92657 -10.70183 -9.95979 -9.15303 -8.95368 -7.93865 -5.28630 1.44301 1.45194 1.54276 1.68731 2.16457 2.48152 2.97359 3.13433 3.24039 3.36529 3.58629 3.70086 3.83037 3.86190 3.98792 4.07515 4.10284 4.21910 4.27687 4.28591 4.40220 4.44070 4.53196 4.53907 4.66928 4.68124 4.69328 4.78158 4.79456 4.82623 4.91298 4.97103 5.03421 5.04808 5.11024 5.11551 5.14330 5.15366 5.17530 5.21674 5.23624 5.32640 5.45386 5.46158 5.47403 5.59806 5.74895 5.89889 5.96705 6.00524 6.66793 6.87687 6.88007 7.36500 7.55051 8.48189 9.21077 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014092 B = 0.003627 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.519524 B = 7717.560157 C = 8542.173571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.077 4.077 3 C -0.159 4.159 4 C 0.071 3.929 5 H 0.120 0.880 6 C 0.487 3.513 7 O -0.555 6.555 8 N -0.703 5.703 9 C 0.161 3.839 10 C -0.085 4.085 11 C 0.097 3.903 12 O -0.593 6.593 13 C 0.163 3.837 14 N -0.629 5.629 15 C -0.239 4.239 16 H 0.076 0.924 17 C -0.054 4.054 18 N -0.943 5.943 19 Si 0.975 3.025 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.273 1.273 23 C 0.129 3.871 24 N -0.492 5.492 25 C 0.035 3.965 26 C -0.119 4.119 27 C -0.132 4.132 28 C 0.047 3.953 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.410 0.590 37 H 0.062 0.938 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.057 0.943 41 H 0.396 0.604 42 H 0.035 0.965 43 H 0.062 0.938 44 H 0.251 0.749 45 H 0.032 0.968 46 H 0.042 0.958 47 H 0.051 0.949 48 H 0.081 0.919 49 H 0.063 0.937 50 H 0.083 0.917 51 H 0.077 0.923 52 H 0.047 0.953 53 H 0.091 0.909 54 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.779 -7.521 3.046 22.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.096 4.096 3 C -0.217 4.217 4 C -0.042 4.042 5 H 0.138 0.862 6 C 0.273 3.727 7 O -0.433 6.433 8 N -0.357 5.357 9 C 0.073 3.927 10 C -0.124 4.124 11 C 0.020 3.980 12 O -0.401 6.401 13 C 0.037 3.963 14 N -0.356 5.356 15 C -0.367 4.367 16 H 0.094 0.906 17 C -0.248 4.248 18 N -0.591 5.591 19 Si 0.804 3.196 20 H -0.212 1.212 21 H -0.218 1.218 22 H -0.198 1.198 23 C 0.003 3.997 24 N -0.214 5.214 25 C -0.093 4.093 26 C -0.157 4.157 27 C -0.171 4.171 28 C -0.080 4.080 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.248 0.752 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.245 0.755 42 H 0.053 0.947 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.050 0.950 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.099 0.901 49 H 0.082 0.918 50 H 0.101 0.899 51 H 0.096 0.904 52 H 0.066 0.934 53 H 0.109 0.891 54 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -20.356 -8.241 2.282 22.079 hybrid contribution 1.981 1.058 0.047 2.247 sum -18.374 -7.184 2.330 19.866 Atomic orbital electron populations 1.21647 0.92115 1.02614 1.02082 1.21011 0.98142 0.95576 0.94875 1.22044 1.00837 0.95245 1.03581 1.22282 0.86718 0.92958 1.02224 0.86187 1.22318 0.91836 0.82571 0.75969 1.90662 1.72791 1.31896 1.47980 1.46297 1.05676 1.17744 1.65984 1.22102 0.79493 0.96561 0.94534 1.21150 0.99288 0.98427 0.93494 1.21900 0.94679 0.92767 0.88702 1.86449 1.67893 1.63807 1.21951 1.22581 0.89496 0.91042 0.93147 1.45896 1.13701 1.39640 1.36395 1.19277 0.91180 1.18607 1.07665 0.90611 1.25508 1.01932 1.00027 0.97382 1.69950 1.40256 1.32590 1.16269 0.85113 0.79133 0.78223 0.77170 1.21180 1.21760 1.19769 1.22823 0.90150 0.91897 0.94826 1.64096 1.53785 1.00423 1.03103 1.23158 1.00061 0.93436 0.92606 1.22571 1.00658 0.96196 0.96238 1.22631 0.99389 0.97906 0.97127 1.22757 0.97560 0.94296 0.93409 0.91683 0.92385 0.91869 0.92485 0.93722 0.91498 0.90388 0.75243 0.91954 0.93691 0.93621 0.92477 0.75458 0.94747 0.91936 0.94005 0.94961 0.94050 0.93048 0.90102 0.91807 0.89864 0.90399 0.93426 0.89117 0.94403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.01 71.98 0.65 -1.18 16 2 C -0.08 -1.40 2.12 -10.79 -0.02 -1.42 16 3 C -0.16 -2.82 8.24 71.98 0.59 -2.23 16 4 C 0.07 1.42 1.77 44.17 0.08 1.50 16 5 H 0.12 1.94 8.14 -2.38 -0.02 1.92 16 6 C 0.49 13.11 4.79 87.66 0.42 13.53 16 7 O -0.56 -18.69 9.75 -3.02 -0.03 -18.72 16 8 N -0.70 -19.30 3.22 -427.58 -1.38 -20.68 16 9 C 0.16 6.00 0.68 5.36 0.00 6.00 16 10 C -0.08 -3.35 4.80 30.59 0.15 -3.20 16 11 C 0.10 3.11 6.76 71.98 0.49 3.60 16 12 O -0.59 -18.81 13.66 -148.98 -2.03 -20.84 16 13 C 0.16 7.31 6.86 86.44 0.59 7.90 16 14 N -0.63 -32.59 3.54 -715.49 -2.54 -35.13 16 15 C -0.24 -13.65 10.69 84.03 0.90 -12.76 16 16 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 17 C -0.05 -3.08 5.50 84.86 0.47 -2.62 16 18 N -0.94 -55.20 11.30 21.65 0.24 -54.95 16 19 Si 0.98 45.86 29.56 68.60 2.03 47.89 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 C 0.13 5.67 7.72 86.49 0.67 6.34 16 24 N -0.49 -10.09 4.40 -864.75 -3.81 -13.90 16 25 C 0.03 0.78 4.64 86.77 0.40 1.18 16 26 C -0.12 -2.47 7.08 31.98 0.23 -2.25 16 27 C -0.13 -3.02 6.41 31.77 0.20 -2.82 16 28 C 0.05 1.01 6.07 86.64 0.53 1.53 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.06 0.98 7.14 -2.39 -0.02 0.96 16 32 H 0.06 1.26 6.89 -2.39 -0.02 1.24 16 33 H 0.04 1.02 6.14 -2.39 -0.01 1.00 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.41 9.05 7.75 -92.70 -0.72 8.33 16 37 H 0.06 2.59 6.87 -2.38 -0.02 2.57 16 38 H 0.04 2.16 8.02 -2.39 -0.02 2.14 16 39 H 0.05 1.49 7.54 -2.39 -0.02 1.47 16 40 H 0.06 1.55 7.81 -2.38 -0.02 1.53 16 41 H 0.40 7.92 9.12 -74.05 -0.68 7.24 16 42 H 0.03 1.49 8.14 -2.38 -0.02 1.48 16 43 H 0.06 3.16 6.35 -2.39 -0.02 3.14 16 44 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 45 H 0.03 1.50 8.10 -2.39 -0.02 1.48 16 46 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.05 1.47 5.09 -2.39 -0.01 1.46 16 48 H 0.08 1.59 7.87 -2.39 -0.02 1.58 16 49 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 51 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 52 H 0.05 1.41 7.02 -2.39 -0.02 1.39 16 53 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 54 H 0.04 0.91 6.63 -2.39 -0.02 0.89 16 Total: -1.00 -69.77 403.91 -1.68 -71.44 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: -0.50 Total: 31.78 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 6.34 Total: 13.12 kcal Atomic # 7 Polarization: -117.18 SS G_CDS: -7.48 Total: -124.66 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -2.06 Total: -39.57 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -69.77 -1.68 -71.44 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755344813.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.925 kcal (2) G-P(sol) polarization free energy of solvation -69.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds