Wall clock time and date at job start Wed Apr 1 2020 00:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47236 * 2 1 4 4 H 1.09000 * 109.52269 * 54.91799 * 3 2 1 5 5 C 1.53192 * 109.50820 * 294.84898 * 3 2 1 6 6 N 1.46929 * 108.76307 * 294.69507 * 5 3 2 7 7 C 1.34773 * 120.63417 * 126.41088 * 6 5 3 8 8 O 1.21283 * 119.99478 * 354.17173 * 7 6 5 9 9 C 1.50691 * 120.00097 * 174.17690 * 7 6 5 10 10 C 1.53006 * 109.46997 * 187.69597 * 9 7 6 11 11 C 1.53000 * 109.47370 * 307.69714 * 9 7 6 12 12 C 1.53004 * 109.47392 * 67.70113 * 9 7 6 13 13 C 1.46930 * 118.73688 * 306.38342 * 6 5 3 14 14 C 1.53199 * 108.77499 * 53.60971 * 13 6 5 15 15 C 1.53039 * 109.49942 * 174.99841 * 3 2 1 16 16 H 1.08994 * 109.46256 * 178.59460 * 15 3 2 17 17 N 1.46894 * 109.46122 * 298.57095 * 15 3 2 18 18 C 1.46903 * 111.00080 * 205.02816 * 17 15 3 19 19 C 1.50702 * 109.47262 * 179.97438 * 18 17 15 20 20 O 1.21290 * 120.00029 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99986 * 179.97438 * 19 18 17 22 22 C 1.37101 * 120.00352 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99295 * 0.02562 * 22 21 19 24 24 C 1.38943 * 120.00367 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99974 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99981 * 180.27992 * 24 22 21 27 27 H 1.48503 * 109.47015 * 179.72409 * 26 24 22 28 28 H 1.48503 * 109.46616 * 299.71912 * 26 24 22 29 29 H 1.48496 * 109.47307 * 59.72133 * 26 24 22 30 30 H 1.09003 * 109.47403 * 59.99849 * 1 2 3 31 31 H 1.09003 * 109.47053 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46953 * 299.99739 * 1 2 3 33 33 H 1.09003 * 109.46953 * 240.00261 * 2 1 3 34 34 H 1.09003 * 109.47403 * 120.00151 * 2 1 3 35 35 H 1.09002 * 109.59605 * 174.91095 * 5 3 2 36 36 H 1.08996 * 109.70552 * 54.54280 * 5 3 2 37 37 H 1.08991 * 109.47079 * 59.99951 * 10 9 7 38 38 H 1.09002 * 109.47059 * 179.97438 * 10 9 7 39 39 H 1.08997 * 109.47360 * 300.00045 * 10 9 7 40 40 H 1.08996 * 109.47220 * 70.32266 * 11 9 7 41 41 H 1.08998 * 109.47267 * 190.32722 * 11 9 7 42 42 H 1.09002 * 109.46970 * 310.31975 * 11 9 7 43 43 H 1.08992 * 109.47192 * 72.22901 * 12 9 7 44 44 H 1.09001 * 109.47173 * 192.23393 * 12 9 7 45 45 H 1.09006 * 109.46736 * 312.22976 * 12 9 7 46 46 H 1.08997 * 109.58846 * 293.82305 * 13 6 5 47 47 H 1.08997 * 109.58600 * 173.39212 * 13 6 5 48 48 H 1.08997 * 109.49828 * 185.41217 * 14 13 6 49 49 H 1.09003 * 109.52314 * 65.33083 * 14 13 6 50 50 H 1.00904 * 111.00181 * 328.97604 * 17 15 3 51 51 H 1.08997 * 109.47228 * 59.99754 * 18 17 15 52 52 H 1.09005 * 109.46846 * 299.99437 * 18 17 15 53 53 H 0.97002 * 120.00168 * 0.02562 * 21 19 18 54 54 H 0.97000 * 120.00373 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 0.8407 5 6 1.6385 2.1271 -1.3103 6 7 2.3364 1.4666 -2.4218 7 6 1.6488 0.9920 -3.4793 8 8 0.4362 1.0124 -3.4727 9 6 2.3867 0.4359 -4.6697 10 6 1.3926 0.1465 -5.7963 11 6 3.4204 1.4559 -5.1512 12 6 3.0961 -0.8596 -4.2705 13 6 3.7984 1.3340 -2.3588 14 6 4.1756 0.6586 -1.0365 15 6 3.5652 1.4451 0.1258 16 1 3.9300 2.4719 0.1006 17 7 3.9525 0.8191 1.3970 18 6 5.2666 1.3015 1.8425 19 6 5.6291 0.6393 3.1468 20 8 4.8675 -0.1558 3.6555 21 7 6.7996 0.9307 3.7481 22 6 7.1292 0.3287 4.9350 23 1 6.4509 -0.3793 5.3878 24 6 8.3356 0.6295 5.5551 25 7 9.1610 1.4906 5.0037 26 14 8.7881 -0.1966 7.1683 27 1 10.1190 0.2869 7.6158 28 1 7.7695 0.1348 8.1968 29 1 8.8355 -1.6681 6.9746 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.9214 3.1792 -1.2748 36 1 0.5613 2.0430 -1.4538 37 1 0.8872 1.0693 -6.0807 38 1 1.9264 -0.2553 -6.6576 39 1 0.6562 -0.5802 -5.4534 40 1 4.2286 1.5256 -4.4232 41 1 3.8238 1.1383 -6.1127 42 1 2.9451 2.4307 -5.2609 43 1 2.3589 -1.6512 -4.1367 44 1 3.7983 -1.1456 -5.0537 45 1 3.6367 -0.7049 -3.3367 46 1 4.2574 2.3213 -2.4088 47 1 4.1462 0.7243 -3.1927 48 1 5.2606 0.6407 -0.9337 49 1 3.7924 -0.3618 -1.0263 50 1 3.2510 0.9750 2.1053 51 1 5.2289 2.3819 1.9821 52 1 6.0171 1.0582 1.0903 53 1 7.4086 1.5669 3.3415 54 1 10.0035 1.7004 5.4363 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699608817.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:59 Heat of formation + Delta-G solvation = -92.732898 kcal Electronic energy + Delta-G solvation = -31393.934191 eV Core-core repulsion = 27364.669394 eV Total energy + Delta-G solvation = -4029.264797 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.96860 -40.23549 -39.36703 -36.98712 -36.28229 -35.69396 -34.68625 -33.25139 -32.03151 -30.56976 -28.45583 -28.24031 -28.05129 -26.57553 -25.18734 -24.79368 -23.22372 -22.66393 -21.06224 -20.40760 -19.89626 -19.22209 -17.98710 -17.46245 -17.11787 -16.79690 -16.73306 -16.37433 -16.15289 -15.65480 -15.61822 -15.50746 -15.17536 -15.01107 -14.77997 -14.47699 -14.27228 -14.01412 -13.79892 -13.51737 -13.34826 -13.20943 -13.18898 -13.03937 -12.99327 -12.86712 -12.83619 -12.73946 -12.53364 -12.42689 -12.35992 -12.14906 -12.12294 -11.88727 -11.68386 -11.55873 -11.49077 -11.21727 -11.13455 -10.49095 -10.30682 -9.99981 -9.60885 -9.26225 -8.45571 -5.93956 1.40141 1.42136 1.52663 1.65619 2.04097 2.07995 2.29797 2.92559 3.22024 3.39955 3.50108 3.72787 3.75678 3.86182 3.93891 3.95336 4.10115 4.23324 4.27041 4.32314 4.37254 4.48483 4.53118 4.56599 4.58902 4.65762 4.66732 4.69889 4.70473 4.73245 4.77321 4.81724 4.87513 4.94640 4.95140 5.00935 5.07522 5.10528 5.21772 5.25856 5.26888 5.34677 5.38160 5.41769 5.46454 5.48261 5.62015 5.93492 6.16545 6.42921 6.45635 6.62111 7.14331 7.20864 7.58622 8.14347 8.71532 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021145 B = 0.002266 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.858044 B =12353.664509 C =13012.911973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.103 4.103 3 C -0.095 4.095 4 H 0.083 0.917 5 C 0.117 3.883 6 N -0.601 5.601 7 C 0.519 3.481 8 O -0.584 6.584 9 C -0.085 4.085 10 C -0.124 4.124 11 C -0.154 4.154 12 C -0.153 4.153 13 C 0.088 3.912 14 C -0.125 4.125 15 C 0.096 3.904 16 H 0.058 0.942 17 N -0.673 5.673 18 C 0.067 3.933 19 C 0.438 3.562 20 O -0.624 6.624 21 N -0.574 5.574 22 C -0.333 4.333 23 H 0.077 0.923 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.990 3.010 27 H -0.270 1.270 28 H -0.273 1.273 29 H -0.273 1.273 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.092 0.908 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.127 0.873 48 H 0.082 0.918 49 H 0.063 0.937 50 H 0.342 0.658 51 H 0.065 0.935 52 H 0.106 0.894 53 H 0.397 0.603 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.765 3.478 -22.595 24.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.141 4.141 3 C -0.115 4.115 4 H 0.101 0.899 5 C -0.006 4.006 6 N -0.332 5.332 7 C 0.309 3.691 8 O -0.464 6.464 9 C -0.088 4.088 10 C -0.182 4.182 11 C -0.210 4.210 12 C -0.210 4.210 13 C -0.034 4.034 14 C -0.164 4.164 15 C -0.014 4.014 16 H 0.076 0.924 17 N -0.306 5.306 18 C -0.065 4.065 19 C 0.225 3.775 20 O -0.511 6.511 21 N -0.211 5.211 22 C -0.463 4.463 23 H 0.095 0.905 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.814 3.186 27 H -0.195 1.195 28 H -0.198 1.198 29 H -0.198 1.198 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.111 0.889 45 H 0.091 0.909 46 H 0.107 0.893 47 H 0.144 0.856 48 H 0.101 0.899 49 H 0.082 0.918 50 H 0.162 0.838 51 H 0.083 0.917 52 H 0.124 0.876 53 H 0.231 0.769 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.449 2.482 -22.478 24.509 hybrid contribution 0.130 0.735 1.373 1.562 sum -9.319 3.217 -21.105 23.294 Atomic orbital electron populations 1.21794 0.96094 1.01288 1.01487 1.21354 0.95162 0.96034 1.01513 1.21642 0.94787 0.97131 0.97918 0.89883 1.21647 0.98353 0.96023 0.84612 1.48062 1.08257 1.57707 1.19200 1.21160 0.87305 0.76371 0.84303 1.90645 1.15878 1.58008 1.81866 1.20828 0.97223 0.97884 0.92860 1.21649 0.97947 1.01525 0.97038 1.22290 0.97904 0.97288 1.03551 1.22157 1.00814 0.94617 1.03403 1.22638 0.78783 1.02915 0.99045 1.21998 1.01489 0.99874 0.93055 1.21562 0.94080 0.96377 0.89363 0.92375 1.60134 1.02934 1.61753 1.05760 1.21575 0.93949 0.97212 0.93777 1.20945 0.82454 0.85616 0.88437 1.90497 1.52364 1.39809 1.68389 1.41928 1.17778 1.40274 1.21140 1.19598 1.03622 1.23536 0.99523 0.90503 1.25998 0.95206 0.97309 1.02693 1.69656 1.11079 1.34132 1.41187 0.85028 0.77665 0.78393 0.77495 1.19463 1.19793 1.19810 0.93034 0.93440 0.92452 0.92846 0.92440 0.90030 0.89987 0.93277 0.89729 0.93686 0.89380 0.89597 0.92830 0.93076 0.88881 0.90885 0.89274 0.85569 0.89912 0.91821 0.83835 0.91720 0.87610 0.76943 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.68 71.98 0.70 -2.77 16 2 C -0.10 -2.46 4.73 30.60 0.14 -2.32 16 3 C -0.10 -1.93 2.05 -10.72 -0.02 -1.95 16 4 H 0.08 1.65 8.10 -2.39 -0.02 1.63 16 5 C 0.12 2.20 5.70 86.36 0.49 2.69 16 6 N -0.60 -10.61 2.31 -818.90 -1.89 -12.51 16 7 C 0.52 10.94 6.45 87.65 0.57 11.50 16 8 O -0.58 -17.03 15.40 -3.04 -0.05 -17.07 16 9 C -0.08 -1.23 0.75 -52.93 -0.04 -1.27 16 10 C -0.12 -1.90 7.75 71.98 0.56 -1.34 16 11 C -0.15 -1.44 7.97 71.98 0.57 -0.86 16 12 C -0.15 -1.88 8.10 71.98 0.58 -1.30 16 13 C 0.09 1.14 3.98 86.36 0.34 1.48 16 14 C -0.13 -2.24 5.09 30.67 0.16 -2.09 16 15 C 0.10 1.98 2.15 44.94 0.10 2.08 16 16 H 0.06 1.08 7.80 -2.39 -0.02 1.06 16 17 N -0.67 -19.61 5.17 -495.45 -2.56 -22.17 16 18 C 0.07 2.14 5.96 85.56 0.51 2.65 16 19 C 0.44 20.26 7.82 87.66 0.69 20.95 16 20 O -0.62 -34.15 15.78 -3.06 -0.05 -34.20 16 21 N -0.57 -28.85 5.29 -306.99 -1.62 -30.48 16 22 C -0.33 -18.75 9.68 84.04 0.81 -17.94 16 23 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 24 C -0.01 -0.65 5.50 84.92 0.47 -0.18 16 25 N -0.92 -48.95 13.05 21.66 0.28 -48.67 16 26 Si 0.99 42.63 29.55 68.60 2.03 44.66 16 27 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 29 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 30 H 0.05 1.28 6.47 -2.39 -0.02 1.26 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.34 6.13 -2.39 -0.01 1.33 16 34 H 0.06 1.62 7.45 -2.39 -0.02 1.60 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.85 5.21 -2.39 -0.01 1.84 16 37 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.04 0.84 8.01 -2.39 -0.02 0.83 16 40 H 0.09 0.61 4.71 -2.39 -0.01 0.60 16 41 H 0.09 0.53 8.11 -2.39 -0.02 0.51 16 42 H 0.05 0.59 8.10 -2.39 -0.02 0.58 16 43 H 0.05 0.77 8.09 -2.39 -0.02 0.75 16 44 H 0.09 0.73 8.09 -2.39 -0.02 0.71 16 45 H 0.07 0.91 4.97 -2.38 -0.01 0.89 16 46 H 0.09 0.87 8.12 -2.39 -0.02 0.85 16 47 H 0.13 1.24 2.56 -2.39 -0.01 1.23 16 48 H 0.08 1.42 7.42 -2.39 -0.02 1.40 16 49 H 0.06 1.37 6.31 -2.39 -0.02 1.36 16 50 H 0.34 10.92 7.96 -89.69 -0.71 10.20 16 51 H 0.06 1.80 8.05 -2.39 -0.02 1.78 16 52 H 0.11 2.96 7.41 -2.38 -0.02 2.95 16 53 H 0.40 18.81 7.90 -92.71 -0.73 18.08 16 54 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -71.08 404.39 2.24 -68.84 By element: Atomic # 1 Polarization: 42.77 SS G_CDS: -0.53 Total: 42.25 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 6.63 Total: 9.35 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -5.80 Total: -113.82 kcal Atomic # 8 Polarization: -51.18 SS G_CDS: -0.10 Total: -51.27 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -71.08 2.24 -68.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699608817.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.892 kcal (2) G-P(sol) polarization free energy of solvation -71.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds