Wall clock time and date at job start Tue Mar 31 2020 23:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53011 * 109.47109 * 2 1 4 4 H 1.08998 * 110.32923 * 52.74861 * 3 2 1 5 5 C 1.54480 * 110.37059 * 175.00203 * 3 2 1 6 6 C 1.54507 * 104.06260 * 142.80866 * 5 3 2 7 7 C 1.54479 * 104.06053 * 0.02562 * 6 5 3 8 8 H 1.08999 * 110.46711 * 94.89991 * 7 6 5 9 9 C 1.50708 * 110.36906 * 217.18596 * 7 6 5 10 10 O 1.21278 * 119.99569 * 111.83507 * 9 7 6 11 11 N 1.34773 * 120.00065 * 291.83575 * 9 7 6 12 12 C 1.46505 * 119.99811 * 179.97438 * 11 9 7 13 13 C 1.53005 * 109.46978 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.46777 * 180.02562 * 13 12 11 15 15 N 1.46898 * 109.47032 * 180.02562 * 14 13 12 16 16 C 1.46903 * 111.00000 * 294.29885 * 15 14 13 17 17 C 1.53237 * 109.34170 * 172.74453 * 16 15 14 18 18 N 1.47080 * 108.51846 * 53.83421 * 17 16 15 19 19 C 1.36936 * 120.88154 * 128.79356 * 18 17 16 20 20 H 1.07998 * 120.00046 * 206.59967 * 19 18 17 21 21 C 1.38813 * 119.99742 * 26.60066 * 19 18 17 22 22 N 1.31617 * 120.00350 * 16.99975 * 21 19 18 23 23 Si 1.86805 * 119.99766 * 197.00136 * 21 19 18 24 24 H 1.48500 * 109.47395 * 59.99758 * 23 21 19 25 25 H 1.48504 * 109.47095 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47216 * 299.99780 * 23 21 19 27 27 C 1.47070 * 118.23725 * 308.81224 * 18 17 16 28 28 C 1.46906 * 111.00190 * 170.00110 * 15 14 13 29 29 O 1.44422 * 110.36944 * 290.38161 * 3 2 1 30 30 H 1.09008 * 109.47145 * 300.00257 * 1 2 3 31 31 H 1.09007 * 109.47065 * 59.99797 * 1 2 3 32 32 H 1.08996 * 109.47444 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47197 * 240.00371 * 2 1 3 34 34 H 1.08998 * 109.47134 * 120.00006 * 2 1 3 35 35 H 1.08997 * 110.51202 * 261.45458 * 5 3 2 36 36 H 1.08998 * 110.51457 * 24.16402 * 5 3 2 37 37 H 1.08998 * 110.50654 * 118.64236 * 6 5 3 38 38 H 1.08999 * 110.51317 * 241.35723 * 6 5 3 39 39 H 0.96996 * 119.99901 * 0.02562 * 11 9 7 40 40 H 1.08996 * 109.46902 * 300.00334 * 12 11 9 41 41 H 1.08997 * 109.46914 * 60.00247 * 12 11 9 42 42 H 1.08996 * 109.46886 * 300.00205 * 13 12 11 43 43 H 1.09003 * 109.46693 * 60.00202 * 13 12 11 44 44 H 1.09005 * 109.47624 * 299.99933 * 14 13 12 45 45 H 1.08999 * 109.47403 * 59.99784 * 14 13 12 46 46 H 1.09000 * 109.49393 * 292.71197 * 16 15 14 47 47 H 1.09004 * 109.48768 * 52.78388 * 16 15 14 48 48 H 1.09000 * 109.63163 * 294.12239 * 17 16 15 49 49 H 1.08999 * 109.62728 * 173.54456 * 17 16 15 50 50 H 0.97005 * 120.00252 * 180.02562 * 22 21 19 51 51 H 1.09008 * 109.63015 * 291.47903 * 27 18 17 52 52 H 1.09007 * 109.79376 * 170.99392 * 27 18 17 53 53 H 1.08991 * 109.48969 * 307.21197 * 28 15 14 54 54 H 1.08998 * 109.49285 * 67.26303 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5829 2.0058 0.8136 5 6 3.5794 1.4687 0.1262 6 6 4.0107 2.6420 -0.7819 7 6 2.6808 3.1864 -1.3487 8 1 2.3215 4.0194 -0.7445 9 6 2.8587 3.6175 -2.7818 10 8 2.3150 2.9998 -3.6728 11 7 3.6219 4.6893 -3.0733 12 6 3.7953 5.1080 -4.4665 13 6 4.6999 6.3408 -4.5197 14 6 4.8805 6.7784 -5.9746 15 7 5.7494 7.9617 -6.0258 16 6 5.1059 9.1156 -5.3836 17 6 6.1078 10.2718 -5.2960 18 7 6.6442 10.5280 -6.6414 19 6 6.6420 11.7911 -7.1701 20 1 6.6184 11.9282 -8.2411 21 6 6.6702 12.8954 -6.3294 22 7 7.0314 12.7559 -5.0715 23 14 6.1952 14.5795 -6.9836 24 1 4.7959 14.5415 -7.4792 25 1 6.3083 15.5833 -5.8950 26 1 7.1047 14.9527 -8.0966 27 6 7.1826 9.3914 -7.4039 28 6 6.1384 8.2699 -7.4085 29 8 1.7630 2.0737 -1.2691 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8749 1.6561 1.1585 36 1 4.0079 0.5321 -0.2307 37 1 4.5193 3.4094 -0.1985 38 1 4.6523 2.2855 -1.5877 39 1 4.0570 5.1831 -2.3607 40 1 4.2511 4.2976 -5.0353 41 1 2.8238 5.3519 -4.8962 42 1 4.2437 7.1510 -3.9509 43 1 5.6716 6.0973 -4.0899 44 1 5.3365 5.9683 -6.5438 45 1 3.9087 7.0219 -6.4041 46 1 4.2432 9.4257 -5.9732 47 1 4.7810 8.8391 -4.3805 48 1 6.9213 10.0012 -4.6229 49 1 5.6046 11.1651 -4.9262 50 1 7.0507 13.5275 -4.4840 51 1 8.0994 9.0361 -6.9333 52 1 7.3926 9.7003 -8.4280 53 1 6.5623 7.3801 -7.8739 54 1 5.2613 8.5913 -7.9700 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752343048.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:32 Heat of formation + Delta-G solvation = -86.293495 kcal Electronic energy + Delta-G solvation = -29421.308754 eV Core-core repulsion = 25392.323190 eV Total energy + Delta-G solvation = -4028.985563 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.39662 -39.91698 -39.57417 -37.04606 -35.84518 -34.59941 -33.75604 -33.09627 -31.97176 -31.62627 -29.77567 -28.33989 -26.22894 -25.11539 -24.38925 -23.90314 -22.81605 -22.23768 -21.95051 -21.25376 -20.79751 -18.73575 -18.33675 -17.68271 -17.44084 -17.03704 -16.74208 -16.46951 -16.19227 -15.74577 -15.52423 -15.37911 -15.22985 -15.18367 -14.80565 -14.68795 -14.53505 -14.41754 -14.28945 -13.99979 -13.40583 -13.35252 -12.96160 -12.88695 -12.81035 -12.68980 -12.60371 -12.53878 -12.39515 -12.31924 -12.08496 -11.94874 -11.90361 -11.76692 -11.72511 -11.52703 -11.48645 -11.30835 -11.01381 -10.65365 -10.57493 -10.17220 -9.26194 -8.67213 -7.87531 -5.31728 1.46778 1.48738 1.49129 1.55737 1.85592 2.50926 2.94239 3.06570 3.27790 3.46902 3.60364 3.69629 3.89635 3.92166 3.95705 4.04823 4.14427 4.17285 4.19219 4.33227 4.35810 4.37625 4.39263 4.47899 4.57946 4.62395 4.64879 4.67462 4.70202 4.75421 4.81145 4.88952 4.89710 4.93082 5.01644 5.04254 5.07430 5.14753 5.15400 5.20944 5.21389 5.25420 5.37994 5.40028 5.40953 5.61181 5.69981 5.83587 6.19249 6.29018 6.38115 6.48994 7.14115 7.16465 7.84882 8.38671 9.19052 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025484 B = 0.001599 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.476621 B =17506.322672 C =17893.438693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C 0.062 3.938 4 H 0.086 0.914 5 C -0.145 4.145 6 C -0.140 4.140 7 C 0.056 3.944 8 H 0.120 0.880 9 C 0.513 3.487 10 O -0.577 6.577 11 N -0.711 5.711 12 C 0.129 3.871 13 C -0.113 4.113 14 C 0.059 3.941 15 N -0.539 5.539 16 C 0.049 3.951 17 C 0.185 3.815 18 N -0.615 5.615 19 C -0.267 4.267 20 H 0.065 0.935 21 C -0.049 4.049 22 N -0.934 5.934 23 Si 0.967 3.033 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.276 1.276 27 C 0.143 3.857 28 C 0.054 3.946 29 O -0.378 6.378 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.068 0.932 39 H 0.418 0.582 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.028 0.972 46 H 0.013 0.987 47 H 0.088 0.912 48 H 0.001 0.999 49 H 0.055 0.945 50 H 0.251 0.749 51 H 0.018 0.982 52 H 0.058 0.942 53 H 0.095 0.905 54 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.927 -24.121 13.774 28.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C 0.005 3.995 4 H 0.104 0.896 5 C -0.183 4.183 6 C -0.178 4.178 7 C -0.005 4.005 8 H 0.137 0.863 9 C 0.299 3.701 10 O -0.456 6.456 11 N -0.365 5.365 12 C 0.005 3.995 13 C -0.151 4.151 14 C -0.070 4.070 15 N -0.264 5.264 16 C -0.080 4.080 17 C 0.059 3.941 18 N -0.339 5.339 19 C -0.398 4.398 20 H 0.083 0.917 21 C -0.245 4.245 22 N -0.580 5.580 23 Si 0.795 3.205 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.201 1.201 27 C 0.018 3.982 28 C -0.075 4.075 29 O -0.297 6.297 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.095 0.905 37 H 0.136 0.864 38 H 0.087 0.913 39 H 0.255 0.745 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.047 0.953 46 H 0.031 0.969 47 H 0.106 0.894 48 H 0.019 0.981 49 H 0.074 0.926 50 H 0.060 0.940 51 H 0.036 0.964 52 H 0.077 0.923 53 H 0.113 0.887 54 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -8.020 -24.603 13.330 29.109 hybrid contribution -0.582 1.671 -0.585 1.864 sum -8.602 -22.932 12.745 27.610 Atomic orbital electron populations 1.21735 0.95574 1.01995 1.01586 1.21629 0.96566 0.94122 1.03166 1.23397 0.95532 0.94873 0.85688 0.89587 1.23023 0.94494 0.98939 1.01848 1.22946 0.95077 0.99743 1.00024 1.23017 0.92428 0.92719 0.92352 0.86279 1.20823 0.77998 0.79984 0.91271 1.90707 1.49112 1.55619 1.50192 1.45789 1.50596 1.30147 1.09929 1.21193 0.99474 0.96625 0.82228 1.21635 1.00395 0.96183 0.96888 1.22023 0.94956 0.92832 0.97148 1.61910 1.42303 1.04622 1.17557 1.22637 0.95282 0.91278 0.98787 1.20641 0.93296 0.94552 0.85641 1.44395 1.69842 1.03762 1.15933 1.19499 1.44770 0.83657 0.91826 0.91688 1.25759 1.00716 1.01241 0.96739 1.70172 1.51042 1.30266 1.06494 0.85346 0.78376 0.79578 0.77159 1.20639 1.21807 1.20145 1.21127 0.94227 0.87545 0.95346 1.22465 0.97715 0.98786 0.88540 1.89274 1.57676 1.43507 1.39231 0.91775 0.94428 0.91880 0.92536 0.88145 0.87439 0.90502 0.86394 0.91308 0.74456 0.91714 0.92606 0.90925 0.89618 0.89503 0.95334 0.96852 0.89392 0.98077 0.92621 0.94009 0.96439 0.92324 0.88707 0.96132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.85 71.98 0.71 -1.25 16 2 C -0.12 -1.39 5.56 30.60 0.17 -1.22 16 3 C 0.06 0.78 3.25 31.10 0.10 0.89 16 4 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 5 C -0.15 -1.24 6.63 31.61 0.21 -1.03 16 6 C -0.14 -1.38 6.62 31.61 0.21 -1.17 16 7 C 0.06 0.88 3.71 30.35 0.11 0.99 16 8 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 9 C 0.51 11.46 7.07 87.66 0.62 12.08 16 10 O -0.58 -19.19 16.55 15.34 0.25 -18.94 16 11 N -0.71 -11.88 5.56 -463.05 -2.57 -14.46 16 12 C 0.13 2.49 5.67 86.38 0.49 2.98 16 13 C -0.11 -2.18 5.26 30.59 0.16 -2.02 16 14 C 0.06 1.41 4.96 86.30 0.43 1.84 16 15 N -0.54 -17.47 4.63 -895.25 -4.15 -21.62 16 16 C 0.05 1.83 5.46 86.38 0.47 2.30 16 17 C 0.18 8.95 5.42 86.35 0.47 9.42 16 18 N -0.62 -31.48 3.04 -698.14 -2.12 -33.60 16 19 C -0.27 -14.91 9.63 84.03 0.81 -14.10 16 20 H 0.07 3.53 7.88 -2.91 -0.02 3.51 16 21 C -0.05 -2.75 4.94 84.86 0.42 -2.33 16 22 N -0.93 -55.09 11.15 21.65 0.24 -54.85 16 23 Si 0.97 44.88 29.59 68.60 2.03 46.91 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 25 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 27 C 0.14 6.03 6.69 86.35 0.58 6.60 16 28 C 0.05 1.83 5.62 86.38 0.49 2.32 16 29 O -0.38 -8.10 10.39 -130.62 -1.36 -9.46 16 30 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.04 0.67 8.01 -2.38 -0.02 0.65 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.08 0.71 7.87 -2.39 -0.02 0.69 16 37 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.07 0.86 7.87 -2.39 -0.02 0.85 16 39 H 0.42 4.27 8.47 -92.71 -0.79 3.49 16 40 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.07 1.43 6.40 -2.39 -0.02 1.41 16 43 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.09 1.85 7.97 -2.38 -0.02 1.83 16 45 H 0.03 0.71 8.12 -2.39 -0.02 0.69 16 46 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.09 2.78 6.16 -2.38 -0.01 2.77 16 48 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 49 H 0.06 3.03 6.12 -2.39 -0.01 3.02 16 50 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 51 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 52 H 0.06 2.37 7.96 -2.38 -0.02 2.35 16 53 H 0.09 2.59 7.99 -2.39 -0.02 2.57 16 54 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -75.92 419.83 -1.16 -77.08 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.07 Total: 12.62 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 6.44 Total: 16.32 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -8.60 Total: -124.52 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -1.10 Total: -28.39 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -75.92 -1.16 -77.08 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752343048.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.217 kcal (2) G-P(sol) polarization free energy of solvation -75.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds