Wall clock time and date at job start Tue Mar 31 2020 23:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46981 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.46939 * 180.02562 * 17 16 14 19 19 N 1.46508 * 109.47261 * 180.02562 * 18 17 16 20 20 C 1.34769 * 120.00187 * 180.02562 * 19 18 17 21 21 O 1.21588 * 120.00089 * 359.97438 * 20 19 18 22 22 N 1.34774 * 120.00006 * 179.97438 * 20 19 18 23 23 C 1.46502 * 120.00040 * 179.97438 * 22 20 19 24 24 C 1.52996 * 109.47256 * 275.00168 * 23 22 20 25 25 C 1.53001 * 109.47128 * 179.97438 * 24 23 22 26 26 C 1.53004 * 109.47272 * 60.00232 * 25 24 23 27 27 C 1.53009 * 109.46714 * 300.00069 * 26 25 24 28 28 C 1.53001 * 109.47307 * 59.99953 * 27 26 25 29 29 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 31 31 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 32 32 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 33 33 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 34 34 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 35 35 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 36 36 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 37 37 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 38 38 H 1.08999 * 109.47408 * 300.00136 * 17 16 14 39 39 H 1.08999 * 109.46846 * 60.00007 * 17 16 14 40 40 H 1.09010 * 109.47132 * 299.99658 * 18 17 16 41 41 H 1.08999 * 109.47677 * 60.00110 * 18 17 16 42 42 H 0.97003 * 119.99421 * 359.97438 * 19 18 17 43 43 H 0.96995 * 119.99891 * 359.97438 * 22 20 19 44 44 H 1.09002 * 109.47202 * 35.00216 * 23 22 20 45 45 H 1.08997 * 109.47462 * 299.99930 * 24 23 22 46 46 H 1.08997 * 109.47379 * 60.00177 * 24 23 22 47 47 H 1.09002 * 109.47291 * 300.00025 * 25 24 23 48 48 H 1.08997 * 109.47420 * 179.97438 * 25 24 23 49 49 H 1.08996 * 109.47022 * 180.02562 * 26 25 24 50 50 H 1.09002 * 109.47132 * 59.99696 * 26 25 24 51 51 H 1.09002 * 109.47016 * 299.99698 * 27 26 25 52 52 H 1.08996 * 109.46517 * 179.97438 * 27 26 25 53 53 H 1.08992 * 109.47056 * 180.02562 * 28 27 26 54 54 H 1.08997 * 109.46917 * 59.99643 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 -1.3523 3.8846 -2.5713 18 6 -1.7415 4.5631 -3.8862 19 7 -3.1013 5.0971 -3.7763 20 6 -3.6589 5.7409 -4.8208 21 8 -3.0333 5.8789 -5.8542 22 7 -4.9101 6.2317 -4.7199 23 6 -5.5160 6.9320 -5.8551 24 6 -5.0945 8.4026 -5.8311 25 6 -5.7269 9.1337 -7.0170 26 6 -7.2509 9.0384 -6.9212 27 6 -7.6724 7.5677 -6.9452 28 6 -7.0401 6.8365 -5.7593 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.8117 0.4042 0.4384 35 1 2.2954 2.1150 -1.9977 36 1 0.7620 4.1421 -2.8933 37 1 0.1091 2.6000 -3.4965 38 1 -2.0464 3.0703 -2.3637 39 1 -1.3928 4.6121 -1.7606 40 1 -1.0474 5.3775 -4.0942 41 1 -1.7010 3.8353 -4.6966 42 1 -3.6006 4.9867 -2.9520 43 1 -5.4093 6.1213 -3.8956 44 1 -5.1814 6.4733 -6.7856 45 1 -5.4291 8.8613 -4.9007 46 1 -4.0089 8.4706 -5.8998 47 1 -5.3919 8.6749 -7.9473 48 1 -5.4270 10.1815 -6.9997 49 1 -7.7013 9.5589 -7.7664 50 1 -7.5859 9.4972 -5.9910 51 1 -7.3374 7.1089 -7.8755 52 1 -8.7581 7.4998 -6.8765 53 1 -7.3399 5.7888 -5.7766 54 1 -7.3750 7.2954 -4.8291 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183893443.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:58 Heat of formation + Delta-G solvation = -135.068289 kcal Electronic energy + Delta-G solvation = -29095.358827 eV Core-core repulsion = 25064.258230 eV Total energy + Delta-G solvation = -4031.100597 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.26607 -40.74460 -39.20239 -37.27257 -36.44352 -35.17702 -34.45095 -33.74875 -32.82530 -31.68335 -30.27986 -29.24168 -27.41856 -24.38322 -23.74028 -23.49950 -22.87566 -22.00016 -21.62921 -21.10932 -20.86001 -19.73727 -19.13839 -17.97881 -17.40046 -17.20808 -16.97393 -16.45226 -16.19432 -15.76969 -15.42522 -15.36483 -15.29570 -15.00566 -14.82788 -14.69796 -14.49494 -14.33233 -14.10713 -13.77754 -13.64059 -13.43205 -13.12857 -13.03964 -13.00208 -12.63945 -12.50786 -12.40902 -12.25880 -12.23174 -12.06470 -11.82946 -11.76316 -11.65229 -11.55243 -11.38510 -11.26347 -11.21558 -11.11246 -10.63661 -10.40246 -10.32063 -9.74986 -9.72835 -8.80524 -6.39722 1.46501 1.48800 1.68747 1.70248 1.87680 2.15318 2.42899 2.59514 2.93756 3.29750 3.72977 3.80265 3.83558 4.04496 4.06130 4.08348 4.23268 4.31803 4.33275 4.36358 4.42266 4.46555 4.55933 4.57555 4.57913 4.60208 4.70498 4.71633 4.76219 4.89770 4.90499 5.08609 5.11107 5.12601 5.17017 5.20486 5.22428 5.24626 5.26550 5.33151 5.33795 5.39495 5.49149 5.51677 5.56890 5.62594 5.74296 5.74577 6.02228 6.03832 6.56295 6.94359 7.10033 7.29176 7.54124 7.59069 8.55778 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.031904 B = 0.001517 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.426464 B =18451.319354 C =18644.264995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.129 4.129 3 C 0.254 3.746 4 H 0.021 0.979 5 C -0.627 4.627 6 H 0.040 0.960 7 C 0.005 3.995 8 N -0.917 5.917 9 Si 1.064 2.936 10 H -0.282 1.282 11 H -0.274 1.274 12 H -0.255 1.255 13 N -0.708 5.708 14 C 0.498 3.502 15 O -0.583 6.583 16 C -0.130 4.130 17 C -0.099 4.099 18 C 0.145 3.855 19 N -0.736 5.736 20 C 0.698 3.302 21 O -0.637 6.637 22 N -0.732 5.732 23 C 0.163 3.837 24 C -0.126 4.126 25 C -0.117 4.117 26 C -0.118 4.118 27 C -0.116 4.116 28 C -0.118 4.118 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.261 0.739 35 H 0.402 0.598 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.410 0.590 43 H 0.410 0.590 44 H 0.060 0.940 45 H 0.072 0.928 46 H 0.038 0.962 47 H 0.054 0.946 48 H 0.068 0.932 49 H 0.071 0.929 50 H 0.070 0.930 51 H 0.058 0.942 52 H 0.081 0.919 53 H 0.072 0.928 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.104 14.105 -15.241 34.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.168 4.168 3 C 0.149 3.851 4 H 0.038 0.962 5 C -0.665 4.665 6 H 0.059 0.941 7 C -0.197 4.197 8 N -0.550 5.550 9 Si 0.886 3.114 10 H -0.207 1.207 11 H -0.199 1.199 12 H -0.180 1.180 13 N -0.356 5.356 14 C 0.286 3.714 15 O -0.464 6.464 16 C -0.170 4.170 17 C -0.138 4.138 18 C 0.021 3.979 19 N -0.392 5.392 20 C 0.397 3.603 21 O -0.519 6.519 22 N -0.387 5.387 23 C 0.058 3.942 24 C -0.165 4.165 25 C -0.155 4.155 26 C -0.156 4.156 27 C -0.154 4.154 28 C -0.156 4.156 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.237 0.763 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.246 0.754 43 H 0.247 0.753 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.057 0.943 47 H 0.073 0.927 48 H 0.086 0.914 49 H 0.090 0.910 50 H 0.089 0.911 51 H 0.077 0.923 52 H 0.100 0.900 53 H 0.091 0.909 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -27.920 13.896 -13.901 34.144 hybrid contribution 0.796 0.068 -1.249 1.483 sum -27.124 13.964 -15.150 34.062 Atomic orbital electron populations 1.21759 0.95378 1.00225 1.01539 1.22120 0.95417 0.98501 1.00732 1.18670 0.93275 0.89494 0.83677 0.96171 1.22181 0.91694 1.48669 1.03908 0.94144 1.26679 0.96724 0.91288 1.05045 1.70960 1.15102 1.38929 1.30004 0.83763 0.75797 0.78277 0.73550 1.20723 1.19932 1.17992 1.46164 1.15930 1.56494 1.17047 1.21253 0.81290 0.78168 0.90652 1.90638 1.51422 1.61079 1.43298 1.21559 0.98578 1.02231 0.94661 1.21330 0.95446 1.00674 0.96320 1.21110 0.81757 0.97631 0.97429 1.45024 1.17533 1.60650 1.16031 1.16169 0.82127 0.78460 0.83506 1.90895 1.64032 1.65964 1.30992 1.45125 1.14142 1.60726 1.18681 1.20858 0.93547 0.91446 0.88349 1.21888 0.99500 0.95286 0.99788 1.21498 0.96300 1.00259 0.97435 1.21566 0.94597 0.96665 1.02750 1.21502 1.00994 0.95248 0.97638 1.21773 0.91623 1.01736 1.00504 0.92796 0.94244 0.92803 0.92969 0.93437 0.92970 0.76337 0.87200 0.86713 0.90784 0.91164 0.92093 0.91788 0.75351 0.75334 0.92128 0.90924 0.94333 0.92674 0.91375 0.91049 0.91143 0.92281 0.90000 0.90924 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.98 8.53 71.98 0.61 -4.36 16 2 C -0.13 -5.56 5.37 30.60 0.16 -5.40 16 3 C 0.25 11.78 1.84 44.25 0.08 11.86 16 4 H 0.02 1.03 6.12 -2.39 -0.01 1.02 16 5 C -0.63 -33.75 8.92 25.60 0.23 -33.53 16 6 H 0.04 2.30 7.96 -2.91 -0.02 2.28 16 7 C 0.01 0.31 5.15 84.66 0.44 0.74 16 8 N -0.92 -54.72 13.70 21.45 0.29 -54.43 16 9 Si 1.06 50.05 26.56 68.60 1.82 51.87 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.26 -11.17 6.34 99.48 0.63 -10.54 16 13 N -0.71 -26.61 5.03 -446.10 -2.24 -28.86 16 14 C 0.50 16.62 6.43 87.66 0.56 17.18 16 15 O -0.58 -23.10 13.13 -3.04 -0.04 -23.14 16 16 C -0.13 -2.83 5.70 29.85 0.17 -2.66 16 17 C -0.10 -1.96 4.62 30.59 0.14 -1.82 16 18 C 0.15 2.75 5.67 86.38 0.49 3.24 16 19 N -0.74 -12.81 5.56 -478.53 -2.66 -15.47 16 20 C 0.70 15.21 8.53 179.06 1.53 16.74 16 21 O -0.64 -19.83 16.01 -3.99 -0.06 -19.90 16 22 N -0.73 -10.60 5.08 -457.82 -2.33 -12.93 16 23 C 0.16 2.34 2.45 44.99 0.11 2.45 16 24 C -0.13 -1.83 5.49 30.59 0.17 -1.66 16 25 C -0.12 -1.34 5.92 30.60 0.18 -1.16 16 26 C -0.12 -0.91 5.92 30.60 0.18 -0.73 16 27 C -0.12 -0.85 5.92 30.60 0.18 -0.67 16 28 C -0.12 -0.97 5.39 30.60 0.17 -0.80 16 29 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.04 1.57 7.89 -2.39 -0.02 1.55 16 31 H 0.05 1.97 5.63 -2.39 -0.01 1.95 16 32 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.05 2.17 5.77 -2.39 -0.01 2.16 16 34 H 0.26 15.59 8.73 -92.71 -0.81 14.78 16 35 H 0.40 13.49 8.53 -92.71 -0.79 12.70 16 36 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.07 1.53 8.10 -2.39 -0.02 1.51 16 39 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16 40 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.41 4.93 8.49 -92.71 -0.79 4.14 16 43 H 0.41 3.34 8.62 -92.71 -0.80 2.54 16 44 H 0.06 1.22 7.58 -2.39 -0.02 1.20 16 45 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 48 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 50 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 51 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 52 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 53 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 54 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -73.13 419.26 -1.41 -74.54 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: -1.59 Total: 28.88 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 5.40 Total: -0.57 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -6.94 Total: -111.69 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -0.10 Total: -43.03 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 1.82 Total: 51.87 kcal Total: -73.13 -1.41 -74.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183893443.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.527 kcal (2) G-P(sol) polarization free energy of solvation -73.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds