Wall clock time and date at job start Tue Mar 31 2020 22:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47149 * 2 1 4 4 H 1.08994 * 109.47073 * 307.20378 * 3 2 1 5 5 C 1.53003 * 109.46783 * 187.20290 * 3 2 1 6 6 C 1.53001 * 109.46961 * 67.20867 * 3 2 1 7 7 H 1.09003 * 109.47156 * 172.54087 * 6 3 2 8 8 N 1.46496 * 109.47253 * 52.53848 * 6 3 2 9 9 C 1.34778 * 120.00390 * 90.86280 * 8 6 3 10 10 O 1.21590 * 119.99666 * 5.12404 * 9 8 6 11 11 N 1.34773 * 120.00494 * 185.12687 * 9 8 6 12 12 C 1.47022 * 125.64838 * 359.69659 * 11 9 8 13 13 C 1.54306 * 107.27658 * 180.96713 * 12 11 9 14 14 C 1.55157 * 102.86851 * 22.52127 * 13 12 11 15 15 C 1.47426 * 125.64999 * 179.97438 * 11 9 8 16 16 C 1.50700 * 109.46970 * 292.53874 * 6 3 2 17 17 O 1.21284 * 120.00159 * 123.38184 * 16 6 3 18 18 N 1.34772 * 120.00144 * 303.38258 * 16 6 3 19 19 C 1.46499 * 120.00434 * 184.93801 * 18 16 6 20 20 C 1.52994 * 109.47357 * 180.02562 * 19 18 16 21 21 C 1.52998 * 109.47393 * 180.02562 * 20 19 18 22 22 C 1.50694 * 109.47532 * 179.97438 * 21 20 19 23 23 H 1.08002 * 119.99958 * 359.97438 * 22 21 20 24 24 C 1.37885 * 119.99997 * 179.97438 * 22 21 20 25 25 N 1.31511 * 120.00081 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99745 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46898 * 90.00288 * 26 24 22 28 28 H 1.48502 * 109.47150 * 210.00164 * 26 24 22 29 29 H 1.48503 * 109.47403 * 330.00421 * 26 24 22 30 30 H 1.09002 * 109.47251 * 287.63011 * 1 2 3 31 31 H 1.08997 * 109.47504 * 47.62454 * 1 2 3 32 32 H 1.09002 * 109.47266 * 167.62747 * 1 2 3 33 33 H 1.09002 * 109.47177 * 239.99799 * 2 1 3 34 34 H 1.09002 * 109.47184 * 120.00279 * 2 1 3 35 35 H 1.09007 * 109.46948 * 65.20774 * 5 3 2 36 36 H 1.09002 * 109.46617 * 185.19874 * 5 3 2 37 37 H 1.08993 * 109.47472 * 305.20187 * 5 3 2 38 38 H 0.97004 * 120.00506 * 270.86345 * 8 6 3 39 39 H 1.09008 * 109.87645 * 300.50881 * 12 11 9 40 40 H 1.08997 * 109.88502 * 61.67031 * 12 11 9 41 41 H 1.09005 * 110.92499 * 264.10467 * 13 12 11 42 42 H 1.09002 * 110.59435 * 140.77933 * 13 12 11 43 43 H 1.08996 * 111.00802 * 206.23046 * 14 13 12 44 44 H 1.09001 * 111.00231 * 82.37353 * 14 13 12 45 45 H 1.08990 * 110.37286 * 274.68116 * 15 11 9 46 46 H 1.09005 * 110.36397 * 36.89388 * 15 11 9 47 47 H 0.97005 * 119.99996 * 4.94066 * 18 16 6 48 48 H 1.09006 * 109.46559 * 300.00092 * 19 18 16 49 49 H 1.08996 * 109.47067 * 59.99736 * 19 18 16 50 50 H 1.09006 * 109.47061 * 299.99417 * 20 19 18 51 51 H 1.08996 * 109.47548 * 59.99662 * 20 19 18 52 52 H 1.09007 * 109.47053 * 300.00186 * 21 20 19 53 53 H 1.09006 * 109.46988 * 59.99205 * 21 20 19 54 54 H 0.97003 * 120.00159 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5753 1.9921 -0.8185 5 6 3.5593 1.4462 -0.1809 6 6 1.6831 2.1096 1.3299 7 1 2.1586 3.0889 1.3843 8 7 2.1558 1.2750 2.4372 9 6 3.3879 1.4681 2.9484 10 8 4.0711 2.3937 2.5549 11 7 3.8626 0.6353 3.8958 12 6 3.1439 -0.5144 4.4642 13 6 4.0655 -1.1521 5.5249 14 6 5.0175 0.0139 5.9014 15 6 5.1863 0.7298 4.5379 16 6 0.1879 2.2712 1.4255 17 8 -0.4151 1.7930 2.3629 18 7 -0.4794 2.9470 0.4693 19 6 -1.9153 3.1977 0.6159 20 6 -2.4236 3.9771 -0.5985 21 6 -3.9231 4.2395 -0.4451 22 6 -4.4237 5.0078 -1.6409 23 1 -3.7406 5.2820 -2.4312 24 6 -5.7539 5.3607 -1.7261 25 7 -6.5857 5.0272 -0.7636 26 14 -6.3742 6.3137 -3.2081 27 1 -6.8159 5.3620 -4.2591 28 1 -7.5181 7.1696 -2.8029 29 1 -5.2817 7.1670 -3.7407 30 1 -0.3634 0.3113 0.9794 31 1 -0.3634 0.6926 -0.7591 32 1 -0.3634 -1.0038 -0.2202 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8086 1.0555 -1.1675 36 1 3.9336 2.4658 -0.0887 37 1 4.0178 0.8201 0.5844 38 1 1.5822 0.5833 2.8025 39 1 2.2169 -0.1789 4.9293 40 1 2.9264 -1.2400 3.6805 41 1 4.6257 -1.9865 5.1029 42 1 3.4877 -1.4732 6.3916 43 1 5.9730 -0.3638 6.2652 44 1 4.5552 0.6743 6.6351 45 1 5.9382 0.2226 3.9335 46 1 5.4618 1.7738 4.6873 47 1 -0.0089 3.2675 -0.3162 48 1 -2.4448 2.2473 0.6849 49 1 -2.0921 3.7786 1.5210 50 1 -1.8942 4.9275 -0.6679 51 1 -2.2469 3.3958 -1.5034 52 1 -4.4530 3.2894 -0.3753 53 1 -4.0995 4.8210 0.4599 54 1 -7.5214 5.2758 -0.8233 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346086896.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:16 Heat of formation + Delta-G solvation = -105.974788 kcal Electronic energy + Delta-G solvation = -30809.773205 eV Core-core repulsion = 26779.934197 eV Total energy + Delta-G solvation = -4029.839008 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.06705 -40.77012 -38.68788 -37.44218 -36.96388 -35.25942 -34.53796 -33.04138 -32.49041 -31.14271 -29.97206 -29.32201 -27.69275 -25.03701 -24.56993 -24.15255 -22.35632 -22.08730 -21.96941 -21.14005 -20.60130 -19.45527 -18.57881 -18.01349 -17.64856 -17.48510 -16.94247 -16.56235 -16.39260 -16.19323 -15.63375 -15.57127 -15.05879 -14.85919 -14.50275 -14.34158 -14.24896 -14.22421 -13.96341 -13.94885 -13.74992 -13.54452 -13.44138 -13.24628 -12.96276 -12.75372 -12.56126 -12.53138 -12.37905 -12.20899 -12.14007 -11.97980 -11.70597 -11.64554 -11.59461 -11.57571 -11.51330 -11.31395 -11.22621 -10.90280 -10.54832 -10.23607 -10.06903 -9.55059 -8.19215 -6.30202 1.39943 1.42046 1.42902 1.49866 1.53877 2.02630 2.21934 2.42665 2.93988 3.14651 3.52513 3.67478 3.68604 3.73606 3.80412 4.05067 4.07310 4.19427 4.22926 4.30444 4.37362 4.39044 4.48617 4.56321 4.57856 4.63580 4.71751 4.76740 4.85678 4.92577 4.94368 4.96438 4.98167 4.99450 5.08002 5.11560 5.12923 5.18331 5.21683 5.25297 5.34688 5.35990 5.36405 5.42167 5.47491 5.53541 5.72213 5.85211 5.98153 6.23030 6.47572 6.87023 6.87511 7.12978 7.39240 7.47347 8.92699 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.022190 B = 0.002020 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.504838 B =13859.548622 C =14202.163155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.108 4.108 3 C -0.096 4.096 4 H 0.100 0.900 5 C -0.127 4.127 6 C 0.153 3.847 7 H 0.112 0.888 8 N -0.716 5.716 9 C 0.721 3.279 10 O -0.622 6.622 11 N -0.639 5.639 12 C 0.089 3.911 13 C -0.121 4.121 14 C -0.126 4.126 15 C 0.117 3.883 16 C 0.521 3.479 17 O -0.574 6.574 18 N -0.708 5.708 19 C 0.134 3.866 20 C -0.103 4.103 21 C 0.024 3.976 22 C -0.540 4.540 23 H 0.066 0.934 24 C -0.004 4.004 25 N -0.934 5.934 26 Si 0.966 3.034 27 H -0.273 1.273 28 H -0.286 1.286 29 H -0.261 1.261 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.039 0.961 38 H 0.406 0.594 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.060 0.940 47 H 0.415 0.585 48 H 0.055 0.945 49 H 0.049 0.951 50 H 0.066 0.934 51 H 0.070 0.930 52 H -0.007 1.007 53 H -0.009 1.009 54 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.607 -15.298 8.313 31.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.146 4.146 3 C -0.116 4.116 4 H 0.118 0.882 5 C -0.185 4.185 6 C 0.043 3.957 7 H 0.130 0.870 8 N -0.371 5.371 9 C 0.423 3.577 10 O -0.503 6.503 11 N -0.377 5.377 12 C -0.033 4.033 13 C -0.159 4.159 14 C -0.164 4.164 15 C -0.005 4.005 16 C 0.308 3.692 17 O -0.455 6.455 18 N -0.360 5.360 19 C 0.010 3.990 20 C -0.141 4.141 21 C -0.013 4.013 22 C -0.578 4.578 23 H 0.084 0.916 24 C -0.202 4.202 25 N -0.575 5.575 26 Si 0.790 3.210 27 H -0.198 1.198 28 H -0.211 1.211 29 H -0.185 1.185 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.243 0.757 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.126 0.874 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.079 0.921 47 H 0.252 0.748 48 H 0.073 0.927 49 H 0.067 0.933 50 H 0.085 0.915 51 H 0.089 0.911 52 H 0.011 0.989 53 H 0.009 0.991 54 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 26.471 -14.890 8.681 31.588 hybrid contribution -1.157 0.529 -0.578 1.397 sum 25.314 -14.361 8.102 30.211 Atomic orbital electron populations 1.22210 0.96491 1.02254 1.02367 1.21492 0.94907 0.95436 1.02762 1.21679 0.97937 0.97427 0.94572 0.88200 1.21658 0.93438 1.01881 1.01480 1.20745 0.89646 0.97152 0.88122 0.87004 1.44624 1.15312 1.39808 1.37395 1.15432 0.81537 0.81592 0.79099 1.90891 1.59810 1.34112 1.65446 1.47679 1.18932 1.30539 1.40577 1.22242 0.96298 0.87387 0.97413 1.22617 0.97254 0.97832 0.98174 1.22803 1.01705 0.97077 0.94814 1.22250 0.83227 1.01204 0.93849 1.20689 0.89896 0.76860 0.81729 1.90682 1.70282 1.49742 1.34762 1.45931 1.09800 1.56695 1.23606 1.21228 0.79747 0.99334 0.98695 1.21602 0.96676 0.99448 0.96336 1.18933 0.91689 0.95080 0.95629 1.21685 0.94430 1.35419 1.06220 0.91568 1.26014 0.97493 0.97242 0.99414 1.70106 1.04505 1.48136 1.34717 0.85437 0.77995 0.78544 0.78999 1.19808 1.21133 1.18510 0.92903 0.92445 0.92349 0.90221 0.92070 0.91037 0.92919 0.94208 0.75676 0.91916 0.90811 0.89048 0.88457 0.87381 0.90939 0.90960 0.92119 0.74821 0.92696 0.93305 0.91532 0.91150 0.98853 0.99088 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.75 8.53 71.98 0.61 -3.14 16 2 C -0.11 -1.88 5.27 30.59 0.16 -1.72 16 3 C -0.10 -1.72 2.34 -10.79 -0.03 -1.74 16 4 H 0.10 1.51 6.98 -2.39 -0.02 1.49 16 5 C -0.13 -2.32 7.97 71.98 0.57 -1.74 16 6 C 0.15 3.47 2.36 44.25 0.10 3.57 16 7 H 0.11 2.76 7.32 -2.39 -0.02 2.74 16 8 N -0.72 -16.22 3.62 -461.41 -1.67 -17.89 16 9 C 0.72 17.83 7.08 179.06 1.27 19.10 16 10 O -0.62 -19.24 14.86 -4.00 -0.06 -19.29 16 11 N -0.64 -11.93 3.33 -829.75 -2.76 -14.69 16 12 C 0.09 1.11 6.16 86.72 0.53 1.65 16 13 C -0.12 -0.82 6.95 31.78 0.22 -0.60 16 14 C -0.13 -1.01 7.08 31.99 0.23 -0.79 16 15 C 0.12 1.73 6.91 86.86 0.60 2.33 16 16 C 0.52 14.15 4.38 87.66 0.38 14.53 16 17 O -0.57 -19.48 14.55 -3.04 -0.04 -19.52 16 18 N -0.71 -18.30 4.73 -463.07 -2.19 -20.49 16 19 C 0.13 4.48 5.68 86.38 0.49 4.97 16 20 C -0.10 -3.82 5.27 30.59 0.16 -3.66 16 21 C 0.02 1.25 4.97 29.85 0.15 1.40 16 22 C -0.54 -29.81 9.11 25.60 0.23 -29.57 16 23 H 0.07 3.44 7.74 -2.91 -0.02 3.41 16 24 C 0.00 -0.23 5.46 84.66 0.46 0.24 16 25 N -0.93 -56.78 13.29 21.45 0.28 -56.49 16 26 Si 0.97 43.67 29.54 68.60 2.03 45.69 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 29 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 30 H 0.05 1.39 4.65 -2.39 -0.01 1.37 16 31 H 0.06 1.25 7.47 -2.39 -0.02 1.23 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.08 7.00 -2.39 -0.02 1.06 16 35 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.05 1.09 8.00 -2.39 -0.02 1.07 16 37 H 0.04 0.83 6.65 -2.39 -0.02 0.82 16 38 H 0.41 8.89 6.73 -92.71 -0.62 8.27 16 39 H 0.06 0.86 8.13 -2.38 -0.02 0.84 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.09 0.41 8.14 -2.38 -0.02 0.39 16 42 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.06 1.10 8.03 -2.38 -0.02 1.08 16 47 H 0.41 8.30 7.46 -92.70 -0.69 7.61 16 48 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 49 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 50 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 51 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 52 H -0.01 -0.39 8.14 -2.38 -0.02 -0.40 16 53 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 54 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -73.21 417.36 1.31 -71.90 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: -0.43 Total: 25.96 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 6.16 Total: 4.82 kcal Atomic # 7 Polarization: -103.22 SS G_CDS: -6.34 Total: -109.56 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -0.10 Total: -38.81 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -73.21 1.31 -71.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346086896.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.072 kcal (2) G-P(sol) polarization free energy of solvation -73.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds