Wall clock time and date at job start Tue Mar 31 2020 22:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46578 * 2 1 4 4 H 1.08992 * 109.47576 * 54.99966 * 3 2 1 5 5 C 1.52999 * 109.47013 * 294.99690 * 3 2 1 6 6 C 1.53008 * 109.46950 * 175.00200 * 3 2 1 7 7 H 1.08991 * 109.47218 * 175.65285 * 6 3 2 8 8 N 1.46500 * 109.46719 * 295.65270 * 6 3 2 9 9 C 1.34777 * 119.99733 * 274.99609 * 8 6 3 10 10 O 1.21585 * 119.99915 * 0.02562 * 9 8 6 11 11 N 1.34783 * 120.00208 * 180.02562 * 9 8 6 12 12 C 1.47017 * 125.64510 * 359.69156 * 11 9 8 13 13 C 1.54317 * 107.27588 * 180.96830 * 12 11 9 14 14 C 1.55156 * 102.86062 * 22.52765 * 13 12 11 15 15 C 1.47427 * 125.64770 * 180.02562 * 11 9 8 16 16 C 1.50700 * 109.47201 * 55.64587 * 6 3 2 17 17 O 1.21280 * 120.00175 * 266.93150 * 16 6 3 18 18 N 1.34776 * 119.99642 * 86.93004 * 16 6 3 19 19 C 1.46501 * 119.99651 * 174.78598 * 18 16 6 20 20 C 1.53004 * 109.46992 * 180.27634 * 19 18 16 21 21 C 1.52998 * 109.47184 * 179.97438 * 20 19 18 22 22 C 1.50701 * 109.47469 * 179.97438 * 21 20 19 23 23 H 1.08005 * 119.99311 * 0.02562 * 22 21 20 24 24 C 1.37877 * 120.00392 * 179.97438 * 22 21 20 25 25 N 1.31515 * 119.99610 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00032 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47286 * 89.99901 * 26 24 22 28 28 H 1.48498 * 109.46967 * 210.00169 * 26 24 22 29 29 H 1.48499 * 109.46804 * 330.00031 * 26 24 22 30 30 H 1.08998 * 109.47163 * 60.00490 * 1 2 3 31 31 H 1.09007 * 109.47039 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47611 * 299.99719 * 1 2 3 33 33 H 1.09000 * 109.47118 * 240.00088 * 2 1 3 34 34 H 1.08998 * 109.47163 * 119.99510 * 2 1 3 35 35 H 1.09005 * 109.47191 * 306.36695 * 5 3 2 36 36 H 1.08993 * 109.47338 * 66.36714 * 5 3 2 37 37 H 1.09001 * 109.46869 * 186.37198 * 5 3 2 38 38 H 0.96998 * 120.00301 * 95.00170 * 8 6 3 39 39 H 1.09000 * 109.88478 * 300.51321 * 12 11 9 40 40 H 1.09008 * 109.88223 * 61.68055 * 12 11 9 41 41 H 1.09000 * 110.92385 * 264.11609 * 13 12 11 42 42 H 1.08996 * 110.59027 * 140.78950 * 13 12 11 43 43 H 1.08998 * 111.00282 * 206.23033 * 14 13 12 44 44 H 1.08997 * 111.00384 * 82.37728 * 14 13 12 45 45 H 1.08997 * 110.36622 * 274.67112 * 15 11 9 46 46 H 1.08995 * 110.36706 * 36.89052 * 15 11 9 47 47 H 0.96999 * 120.00352 * 355.06378 * 18 16 6 48 48 H 1.09005 * 109.47045 * 300.27354 * 19 18 16 49 49 H 1.09000 * 109.47692 * 60.27656 * 19 18 16 50 50 H 1.08998 * 109.47291 * 300.00000 * 20 19 18 51 51 H 1.09007 * 109.47368 * 60.00004 * 20 19 18 52 52 H 1.09005 * 109.47056 * 299.99844 * 21 20 19 53 53 H 1.09000 * 109.47490 * 60.00028 * 21 20 19 54 54 H 0.97001 * 119.99397 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 1.6052 1.9816 0.8417 5 6 1.6351 2.1265 -1.3074 6 6 3.5648 1.4445 0.1257 7 1 3.9344 2.4669 0.0482 8 7 3.9484 0.8835 1.4235 9 6 3.9866 1.6740 2.5145 10 8 3.7023 2.8525 2.4216 11 7 4.3401 1.1581 3.7085 12 6 4.7003 -0.2443 3.9631 13 6 5.0053 -0.3728 5.4703 14 6 4.2441 0.8336 6.0807 15 6 4.4227 1.9053 4.9767 16 6 4.1609 0.6096 -0.9783 17 8 4.4027 -0.5635 -0.7883 18 7 4.4252 1.1668 -2.1767 19 6 5.1087 0.3875 -3.2119 20 6 5.2909 1.2499 -4.4625 21 6 6.0054 0.4364 -5.5435 22 6 6.1843 1.2856 -6.7755 23 1 5.8247 2.3039 -6.7862 24 6 6.8079 0.7629 -7.8886 25 7 7.2471 -0.4767 -7.8749 26 14 7.0303 1.8158 -9.4154 27 1 8.3258 2.5371 -9.3350 28 1 7.0208 0.9483 -10.6206 29 1 5.9210 2.7990 -9.5045 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 1.9737 1.5259 -2.1517 36 1 0.5504 2.2264 -1.3445 37 1 2.0929 3.1144 -1.3575 38 1 4.1749 -0.0567 1.4977 39 1 3.8684 -0.8954 3.6945 40 1 5.5845 -0.5109 3.3839 41 1 6.0755 -0.2892 5.6595 42 1 4.6157 -1.3125 5.8615 43 1 4.7052 1.1543 7.0149 44 1 3.1904 0.5968 6.2280 45 1 5.3958 2.3874 5.0702 46 1 3.6258 2.6467 5.0329 47 1 4.1664 2.0850 -2.3524 48 1 6.0846 0.0710 -2.8435 49 1 4.5118 -0.4902 -3.4597 50 1 4.3151 1.5665 -4.8310 51 1 5.8880 2.1277 -4.2148 52 1 6.9813 0.1202 -5.1748 53 1 5.4088 -0.4416 -5.7914 54 1 7.6855 -0.8446 -8.6581 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346086900.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:24 Heat of formation + Delta-G solvation = -115.161414 kcal Electronic energy + Delta-G solvation = -30394.584090 eV Core-core repulsion = 26364.346719 eV Total energy + Delta-G solvation = -4030.237370 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.93854 -40.77093 -38.65485 -37.55797 -36.94962 -35.28106 -34.91935 -33.16408 -32.54671 -30.99254 -29.91476 -28.91698 -27.68609 -25.39619 -24.80734 -24.03409 -22.33472 -22.30377 -22.06381 -21.16016 -20.32735 -19.52926 -18.55552 -17.85317 -17.53686 -17.38212 -16.94188 -16.63534 -16.41812 -16.07258 -15.97697 -15.71548 -15.36957 -14.83424 -14.51811 -14.45310 -14.27780 -14.16320 -13.96996 -13.89112 -13.75387 -13.51645 -13.41928 -13.24440 -12.93375 -12.75900 -12.59327 -12.54759 -12.38895 -12.21906 -12.16425 -12.14011 -11.79780 -11.67693 -11.60365 -11.59433 -11.54783 -11.41379 -11.23476 -10.89509 -10.55229 -10.32074 -10.12267 -9.58557 -8.19609 -6.30597 1.24337 1.41762 1.42688 1.53654 1.56043 1.98494 2.17095 2.42320 2.90731 3.14263 3.49461 3.66705 3.69077 3.71920 3.81711 3.99358 4.06465 4.15458 4.21163 4.28760 4.30453 4.45837 4.47910 4.55068 4.57499 4.60554 4.62369 4.73874 4.85192 4.92021 4.94204 4.95069 4.98633 5.00348 5.07711 5.11095 5.11152 5.13971 5.16579 5.21235 5.24590 5.34631 5.37015 5.41487 5.44837 5.52404 5.71139 5.84504 5.93622 6.22463 6.43664 6.81961 6.86783 7.07691 7.38836 7.40799 8.92322 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015838 B = 0.002073 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.441552 B =13504.997840 C =14242.024527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C -0.087 4.087 4 H 0.083 0.917 5 C -0.157 4.157 6 C 0.156 3.844 7 H 0.108 0.892 8 N -0.721 5.721 9 C 0.720 3.280 10 O -0.625 6.625 11 N -0.638 5.638 12 C 0.088 3.912 13 C -0.122 4.122 14 C -0.123 4.123 15 C 0.115 3.885 16 C 0.517 3.483 17 O -0.567 6.567 18 N -0.709 5.709 19 C 0.132 3.868 20 C -0.103 4.103 21 C 0.024 3.976 22 C -0.540 4.540 23 H 0.066 0.934 24 C -0.004 4.004 25 N -0.934 5.934 26 Si 0.966 3.034 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.261 1.261 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.408 0.592 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.414 0.586 48 H 0.052 0.948 49 H 0.055 0.945 50 H 0.069 0.931 51 H 0.066 0.934 52 H -0.008 1.008 53 H -0.006 1.006 54 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.018 2.586 29.037 31.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.107 4.107 4 H 0.101 0.899 5 C -0.215 4.215 6 C 0.046 3.954 7 H 0.126 0.874 8 N -0.377 5.377 9 C 0.422 3.578 10 O -0.506 6.506 11 N -0.376 5.376 12 C -0.034 4.034 13 C -0.160 4.160 14 C -0.161 4.161 15 C -0.007 4.007 16 C 0.302 3.698 17 O -0.446 6.446 18 N -0.361 5.361 19 C 0.008 3.992 20 C -0.141 4.141 21 C -0.013 4.013 22 C -0.578 4.578 23 H 0.084 0.916 24 C -0.201 4.201 25 N -0.574 5.574 26 Si 0.790 3.210 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.185 1.185 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.245 0.755 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.251 0.749 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.088 0.912 51 H 0.085 0.915 52 H 0.010 0.990 53 H 0.012 0.988 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.951 2.504 28.920 31.025 hybrid contribution 0.542 0.005 -1.262 1.373 sum -10.409 2.509 27.658 29.658 Atomic orbital electron populations 1.21757 0.94308 1.01997 1.02303 1.21520 0.97128 0.95246 1.01390 1.21448 0.91254 0.97562 1.00427 0.89851 1.22005 1.03302 1.00863 0.95302 1.20750 0.96296 0.97588 0.80737 0.87394 1.44750 1.73668 1.13306 1.06016 1.15472 0.78099 0.84138 0.80100 1.90891 1.58512 1.16078 1.85127 1.47684 1.71202 1.11931 1.06780 1.22262 1.00446 0.81404 0.99308 1.22624 1.01903 1.00014 0.91436 1.22786 1.01845 0.93956 0.97508 1.22274 1.01681 0.95462 0.81294 1.20716 0.77379 0.87796 0.83882 1.90672 1.54247 1.17491 1.82227 1.46021 1.59313 1.17628 1.13107 1.21270 0.96048 0.94602 0.87271 1.21612 1.01119 0.98330 0.93074 1.18934 0.94305 0.94920 0.93169 1.21680 1.37611 0.99463 0.99046 0.91620 1.26009 0.95300 0.96304 1.02515 1.70108 1.40447 1.15905 1.30968 0.85435 0.78926 0.78494 0.78116 1.19919 1.21033 1.18477 0.91875 0.92491 0.92334 0.93392 0.92543 0.92613 0.90311 0.90923 0.75523 0.90984 0.91670 0.89596 0.88036 0.87491 0.90293 0.91503 0.91632 0.74859 0.92982 0.92680 0.91245 0.91536 0.98961 0.98797 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.67 71.98 0.70 -1.80 16 2 C -0.12 -2.41 4.76 30.59 0.15 -2.27 16 3 C -0.09 -1.77 2.34 -10.79 -0.03 -1.80 16 4 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 5 C -0.16 -2.76 7.92 71.98 0.57 -2.19 16 6 C 0.16 3.65 2.15 44.25 0.10 3.75 16 7 H 0.11 2.56 7.58 -2.39 -0.02 2.55 16 8 N -0.72 -16.84 4.36 -461.40 -2.01 -18.85 16 9 C 0.72 18.22 8.45 179.05 1.51 19.73 16 10 O -0.62 -19.87 16.26 -3.98 -0.06 -19.93 16 11 N -0.64 -12.11 3.33 -829.81 -2.76 -14.87 16 12 C 0.09 1.13 6.14 86.73 0.53 1.66 16 13 C -0.12 -0.85 6.95 31.78 0.22 -0.63 16 14 C -0.12 -0.91 7.08 31.98 0.23 -0.68 16 15 C 0.12 1.71 6.91 86.85 0.60 2.31 16 16 C 0.52 14.29 5.33 87.66 0.47 14.76 16 17 O -0.57 -19.09 15.39 -3.03 -0.05 -19.14 16 18 N -0.71 -18.98 4.69 -463.05 -2.17 -21.16 16 19 C 0.13 4.47 5.68 86.38 0.49 4.96 16 20 C -0.10 -3.90 5.27 30.59 0.16 -3.74 16 21 C 0.02 1.25 4.97 29.85 0.15 1.40 16 22 C -0.54 -29.93 9.11 25.60 0.23 -29.69 16 23 H 0.07 3.43 7.74 -2.91 -0.02 3.40 16 24 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 25 N -0.93 -56.73 13.29 21.45 0.28 -56.44 16 26 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 27 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 28 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 29 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 30 H 0.06 1.01 6.71 -2.39 -0.02 0.99 16 31 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 1.20 7.00 -2.39 -0.02 1.19 16 34 H 0.06 1.22 7.60 -2.39 -0.02 1.20 16 35 H 0.05 1.08 6.82 -2.38 -0.02 1.07 16 36 H 0.08 1.20 6.89 -2.39 -0.02 1.18 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.41 9.20 6.79 -92.71 -0.63 8.57 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.07 1.14 8.03 -2.39 -0.02 1.12 16 47 H 0.41 8.91 7.82 -92.71 -0.72 8.19 16 48 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 49 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 51 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 52 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 53 H -0.01 -0.36 8.14 -2.39 -0.02 -0.37 16 54 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -73.03 426.07 1.32 -71.71 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: -0.48 Total: 26.88 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 6.54 Total: 6.03 kcal Atomic # 7 Polarization: -104.65 SS G_CDS: -6.66 Total: -111.31 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -0.11 Total: -39.07 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -73.03 1.32 -71.71 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346086900.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.451 kcal (2) G-P(sol) polarization free energy of solvation -73.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds