Wall clock time and date at job start Tue Mar 31 2020 22:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46908 * 2 1 4 4 H 1.09001 * 109.46772 * 304.99455 * 3 2 1 5 5 C 1.53001 * 109.47236 * 64.99407 * 3 2 1 6 6 C 1.53001 * 109.47001 * 184.99949 * 3 2 1 7 7 H 1.09001 * 109.46954 * 299.99395 * 6 3 2 8 8 N 1.46494 * 109.47279 * 59.99946 * 6 3 2 9 9 C 1.34771 * 120.00149 * 59.99570 * 8 6 3 10 10 C 1.50701 * 119.99859 * 179.97438 * 9 8 6 11 11 O 1.21280 * 120.00169 * 0.02562 * 9 8 6 12 12 C 1.50702 * 109.46915 * 179.97438 * 6 3 2 13 13 O 1.21276 * 120.00016 * 259.99580 * 12 6 3 14 14 N 1.34779 * 119.99828 * 79.99633 * 12 6 3 15 15 C 1.46502 * 119.99994 * 179.97438 * 14 12 6 16 16 C 1.52992 * 109.47309 * 180.02562 * 15 14 12 17 17 C 1.53358 * 109.42183 * 295.13335 * 16 15 14 18 18 C 1.53188 * 109.15126 * 178.67300 * 17 16 15 19 19 N 1.46927 * 108.89428 * 54.57704 * 18 17 16 20 20 C 1.36933 * 120.63022 * 126.33925 * 19 18 17 21 21 H 1.08000 * 120.00191 * 331.82823 * 20 19 18 22 22 C 1.38816 * 120.00216 * 151.82741 * 20 19 18 23 23 N 1.31624 * 119.99356 * 343.07025 * 22 20 19 24 24 Si 1.86793 * 120.00395 * 163.07047 * 22 20 19 25 25 H 1.48493 * 109.47484 * 90.00085 * 24 22 20 26 26 H 1.48503 * 109.47169 * 210.00310 * 24 22 20 27 27 H 1.48506 * 109.47138 * 329.99723 * 24 22 20 28 28 C 1.46927 * 118.73625 * 306.32307 * 19 18 17 29 29 C 1.53041 * 109.46440 * 175.00326 * 16 15 14 30 30 H 1.09007 * 109.46903 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47598 * 300.00081 * 1 2 3 32 32 H 1.09005 * 109.47108 * 60.00731 * 1 2 3 33 33 H 1.08995 * 109.47598 * 239.99919 * 2 1 3 34 34 H 1.09005 * 109.47108 * 119.99269 * 2 1 3 35 35 H 1.09003 * 109.47166 * 179.97438 * 5 3 2 36 36 H 1.08994 * 109.47352 * 300.00236 * 5 3 2 37 37 H 1.09002 * 109.46816 * 60.00687 * 5 3 2 38 38 H 0.97001 * 119.99697 * 240.00201 * 8 6 3 39 39 H 1.09003 * 109.47176 * 60.00770 * 10 9 8 40 40 H 1.09001 * 109.47287 * 180.02562 * 10 9 8 41 41 H 1.09003 * 109.47452 * 300.00310 * 10 9 8 42 42 H 0.97001 * 120.00416 * 0.02562 * 14 12 6 43 43 H 1.09003 * 109.46742 * 60.00680 * 15 14 12 44 44 H 1.09000 * 109.47343 * 300.00678 * 15 14 12 45 45 H 1.09005 * 109.46227 * 55.03135 * 16 15 14 46 46 H 1.08999 * 109.68305 * 58.70700 * 17 16 15 47 47 H 1.09002 * 109.46954 * 298.51478 * 17 16 15 48 48 H 1.08997 * 109.58674 * 294.71955 * 18 17 16 49 49 H 1.09000 * 109.58865 * 174.43595 * 18 17 16 50 50 H 0.96997 * 119.99488 * 180.02562 * 23 22 20 51 51 H 1.09002 * 109.58387 * 173.39335 * 28 19 18 52 52 H 1.09004 * 109.58558 * 293.67310 * 28 19 18 53 53 H 1.08998 * 109.49362 * 61.43368 * 29 16 15 54 54 H 1.08995 * 109.49667 * 301.34387 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6350 2.1266 1.3073 6 6 3.5648 1.4444 -0.1257 7 1 3.9994 0.9055 0.7162 8 7 3.9524 0.7894 -1.3774 9 6 3.5278 1.2848 -2.5567 10 6 3.9271 0.6113 -3.8444 11 8 2.8253 2.2730 -2.5818 12 6 4.0670 2.8653 -0.1263 13 8 4.3555 3.4060 -1.1729 14 7 4.1956 3.5351 1.0362 15 6 4.6843 4.9162 1.0356 16 6 4.7361 5.4394 2.4724 17 6 3.3137 5.5090 3.0413 18 6 3.3756 6.0018 4.4905 19 7 4.1056 7.2764 4.5287 20 6 3.5485 8.3821 5.1136 21 1 2.4748 8.4956 5.1408 22 6 4.3638 9.3573 5.6715 23 7 5.6230 9.0862 5.9425 24 14 3.6740 11.0542 6.0376 25 1 3.1235 11.0779 7.4165 26 1 4.7559 12.0645 5.9191 27 1 2.5941 11.3693 5.0680 28 6 5.4448 7.3418 3.9278 29 6 5.3629 6.8355 2.4844 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.9987 3.1542 1.3075 36 1 0.5488 2.1253 1.3968 37 1 2.0697 1.5877 2.1491 38 1 4.5145 -0.0008 -1.3574 39 1 3.5641 -0.4166 -3.8446 40 1 3.4928 1.1504 -4.6863 41 1 5.0135 0.6130 -3.9338 42 1 3.9652 3.1025 1.8733 43 1 4.0120 5.5392 0.4458 44 1 5.6836 4.9478 0.6015 45 1 5.3380 4.7660 3.0827 46 1 2.8581 4.5192 3.0129 47 1 2.7180 6.2014 2.4466 48 1 3.8936 5.2656 5.1050 49 1 2.3644 6.1484 4.8701 50 1 6.1925 9.7675 6.3327 51 1 5.7980 8.3729 3.9339 52 1 6.1320 6.7167 4.4981 53 1 4.7479 7.5154 1.8947 54 1 6.3648 6.7882 2.0580 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353334225.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:36 Heat of formation + Delta-G solvation = -93.846036 kcal Electronic energy + Delta-G solvation = -31287.194779 eV Core-core repulsion = 27257.881713 eV Total energy + Delta-G solvation = -4029.313066 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.73981 -40.00475 -39.12285 -37.54183 -36.38473 -34.80283 -34.42514 -32.63385 -31.66418 -31.32264 -30.21763 -28.60284 -27.22522 -25.89645 -24.70645 -23.81057 -22.67795 -22.21925 -21.45387 -20.79574 -20.36095 -18.73705 -18.44976 -17.86084 -17.18255 -16.85630 -16.54331 -16.36020 -16.04014 -15.65666 -15.53625 -15.31171 -15.06366 -14.83835 -14.80035 -14.54077 -14.33380 -14.01685 -13.86430 -13.71665 -13.49709 -13.30338 -13.19386 -13.01679 -12.91055 -12.82964 -12.80634 -12.55440 -12.45680 -12.27218 -12.02744 -11.94753 -11.84492 -11.72010 -11.60889 -11.49083 -11.24710 -11.11491 -11.03796 -10.53645 -10.51939 -9.99402 -9.84808 -8.66169 -7.87686 -5.31968 1.44634 1.46917 1.56130 1.65526 1.81263 2.18548 2.50822 2.52908 3.26985 3.68358 3.71386 3.79662 3.85460 3.92655 3.93778 4.07908 4.10925 4.24720 4.26081 4.50792 4.51234 4.53344 4.59597 4.67685 4.68858 4.70045 4.72773 4.73088 4.80370 4.81965 4.93028 5.02516 5.10049 5.11263 5.12935 5.15749 5.22833 5.24604 5.28314 5.29417 5.39692 5.43185 5.49211 5.54133 5.55724 5.58646 5.65922 5.79017 6.40170 6.61608 6.70349 7.15963 7.32659 7.53147 7.88591 8.39019 9.18532 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020154 B = 0.002362 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.962131 B =11850.654484 C =12604.002220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.097 4.097 4 H 0.055 0.945 5 C -0.162 4.162 6 C 0.140 3.860 7 H 0.149 0.851 8 N -0.709 5.709 9 C 0.503 3.497 10 C -0.165 4.165 11 O -0.571 6.571 12 C 0.494 3.506 13 O -0.565 6.565 14 N -0.714 5.714 15 C 0.139 3.861 16 C -0.075 4.075 17 C -0.113 4.113 18 C 0.141 3.859 19 N -0.612 5.612 20 C -0.262 4.262 21 H 0.063 0.937 22 C -0.051 4.051 23 N -0.934 5.934 24 Si 0.963 3.037 25 H -0.283 1.283 26 H -0.293 1.293 27 H -0.274 1.274 28 C 0.178 3.822 29 C -0.123 4.123 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.034 0.966 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.423 0.577 39 H 0.117 0.883 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.413 0.587 43 H 0.042 0.958 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.043 0.957 48 H 0.022 0.978 49 H 0.050 0.950 50 H 0.250 0.750 51 H 0.050 0.950 52 H 0.002 0.998 53 H 0.044 0.956 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.711 -26.797 -13.286 30.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.142 4.142 3 C -0.117 4.117 4 H 0.074 0.926 5 C -0.220 4.220 6 C 0.031 3.969 7 H 0.167 0.833 8 N -0.364 5.364 9 C 0.291 3.709 10 C -0.224 4.224 11 O -0.448 6.448 12 C 0.280 3.720 13 O -0.442 6.442 14 N -0.368 5.368 15 C 0.015 3.985 16 C -0.094 4.094 17 C -0.152 4.152 18 C 0.016 3.984 19 N -0.336 5.336 20 C -0.392 4.392 21 H 0.081 0.919 22 C -0.246 4.246 23 N -0.580 5.580 24 Si 0.791 3.209 25 H -0.209 1.209 26 H -0.219 1.219 27 H -0.199 1.199 28 C 0.053 3.947 29 C -0.162 4.162 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.261 0.739 39 H 0.135 0.865 40 H 0.095 0.905 41 H 0.120 0.880 42 H 0.251 0.749 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.100 0.900 46 H 0.105 0.895 47 H 0.062 0.938 48 H 0.040 0.960 49 H 0.069 0.931 50 H 0.059 0.941 51 H 0.068 0.932 52 H 0.020 0.980 53 H 0.063 0.937 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.893 -25.611 -14.007 29.449 hybrid contribution 0.070 1.259 0.669 1.427 sum -3.823 -24.352 -13.338 28.027 Atomic orbital electron populations 1.21811 0.96005 1.01985 1.01336 1.21462 0.95798 0.93863 1.03071 1.21401 0.92173 0.98790 0.99374 0.92619 1.22105 1.02742 1.00475 0.96673 1.21057 0.96653 0.89639 0.89552 0.83346 1.45574 1.54343 1.32247 1.04213 1.21410 0.79059 0.83465 0.86946 1.21890 1.04618 1.03037 0.92862 1.90717 1.39053 1.27066 1.88005 1.21582 0.77207 0.89991 0.83229 1.90729 1.50286 1.70430 1.32768 1.46072 1.67166 1.14208 1.09389 1.21161 0.98523 0.82228 0.96584 1.21187 0.97424 0.96598 0.94227 1.21991 0.95705 1.00963 0.96576 1.21064 0.95472 0.87007 0.94881 1.44319 1.16769 1.07023 1.65480 1.19476 0.91582 0.98220 1.29914 0.91930 1.25758 0.96851 1.02992 0.99035 1.70170 1.07292 1.33605 1.46924 0.85342 0.77279 0.80218 0.78018 1.20923 1.21877 1.19923 1.20553 0.85657 0.99118 0.89409 1.21978 0.99987 0.96044 0.98231 0.91552 0.92190 0.94677 0.91785 0.89461 0.93417 0.91643 0.89394 0.73916 0.86491 0.90463 0.88013 0.74905 0.93949 0.92399 0.89972 0.89478 0.93813 0.95961 0.93121 0.94134 0.93201 0.97995 0.93705 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.67 71.98 0.70 -1.25 16 2 C -0.10 -1.16 5.32 30.59 0.16 -1.00 16 3 C -0.10 -1.63 1.75 -10.79 -0.02 -1.65 16 4 H 0.06 1.47 6.17 -2.39 -0.01 1.46 16 5 C -0.16 -2.44 7.97 71.98 0.57 -1.87 16 6 C 0.14 2.21 2.61 44.25 0.12 2.32 16 7 H 0.15 1.05 8.14 -2.39 -0.02 1.03 16 8 N -0.71 -9.89 4.35 -446.11 -1.94 -11.83 16 9 C 0.50 10.61 6.71 87.66 0.59 11.20 16 10 C -0.16 -1.93 10.32 71.24 0.74 -1.20 16 11 O -0.57 -18.99 12.97 19.44 0.25 -18.74 16 12 C 0.49 12.59 6.30 87.66 0.55 13.14 16 13 O -0.56 -20.48 13.68 19.45 0.27 -20.21 16 14 N -0.71 -15.98 3.96 -463.06 -1.83 -17.81 16 15 C 0.14 3.94 5.07 86.38 0.44 4.38 16 16 C -0.08 -2.27 2.19 -10.66 -0.02 -2.29 16 17 C -0.11 -3.52 5.27 30.78 0.16 -3.36 16 18 C 0.14 5.57 6.50 86.36 0.56 6.13 16 19 N -0.61 -30.64 2.99 -699.11 -2.09 -32.73 16 20 C -0.26 -14.56 9.58 84.04 0.81 -13.75 16 21 H 0.06 3.42 7.88 -2.91 -0.02 3.39 16 22 C -0.05 -2.89 4.92 84.86 0.42 -2.47 16 23 N -0.93 -55.58 11.20 21.65 0.24 -55.34 16 24 Si 0.96 45.57 29.59 68.60 2.03 47.60 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 26 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 27 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 28 C 0.18 8.57 5.30 86.36 0.46 9.03 16 29 C -0.12 -4.60 5.36 30.67 0.16 -4.43 16 30 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.06 0.74 6.56 -2.39 -0.02 0.72 16 32 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.06 0.69 7.45 -2.39 -0.02 0.67 16 34 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.05 0.92 5.74 -2.39 -0.01 0.91 16 36 H 0.06 1.00 6.56 -2.39 -0.02 0.98 16 37 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.42 2.24 8.83 -92.71 -0.82 1.42 16 39 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.08 1.13 8.12 -2.39 -0.02 1.11 16 41 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.41 6.73 6.51 -92.71 -0.60 6.13 16 43 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 46 H 0.09 2.04 6.96 -2.39 -0.02 2.02 16 47 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 50 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 51 H 0.05 2.76 6.06 -2.39 -0.01 2.74 16 52 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 53 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 54 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -82.38 410.12 2.78 -79.60 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -0.53 Total: 16.53 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 6.39 Total: 12.92 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -5.62 Total: -117.71 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: 0.52 Total: -38.95 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -82.38 2.78 -79.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353334225.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.243 kcal (2) G-P(sol) polarization free energy of solvation -82.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds