Wall clock time and date at job start Wed Apr 1 2020 00:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47462 * 2 1 4 4 N 1.46500 * 109.47267 * 180.02562 * 3 2 1 5 5 C 1.46507 * 119.99880 * 270.00782 * 4 3 2 6 6 C 1.53002 * 109.46734 * 269.99573 * 5 4 3 7 7 C 1.52994 * 109.46890 * 179.97438 * 6 5 4 8 8 C 1.34767 * 120.00080 * 90.00360 * 4 3 2 9 9 O 1.21287 * 120.00269 * 180.02562 * 8 4 3 10 10 C 1.50704 * 119.99994 * 359.97438 * 8 4 3 11 11 C 1.52998 * 109.47148 * 179.97438 * 10 8 4 12 12 C 1.50703 * 109.47087 * 180.02562 * 11 10 8 13 13 O 1.21279 * 120.00143 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99763 * 180.02562 * 12 11 10 15 15 C 1.46965 * 120.59323 * 179.97438 * 14 12 11 16 16 C 1.53374 * 108.63702 * 235.25034 * 15 14 12 17 17 N 1.46968 * 108.63080 * 310.57409 * 16 15 14 18 18 C 1.36934 * 120.58904 * 235.19759 * 17 16 15 19 19 H 1.08009 * 119.99376 * 151.84519 * 18 17 16 20 20 C 1.38804 * 120.00824 * 331.57781 * 18 17 16 21 21 N 1.31627 * 119.99593 * 342.82852 * 20 18 17 22 22 Si 1.86794 * 120.00637 * 162.82757 * 20 18 17 23 23 H 1.48504 * 109.47167 * 59.99793 * 22 20 18 24 24 H 1.48497 * 109.47420 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47203 * 300.00107 * 22 20 18 26 26 C 1.46960 * 118.80978 * 55.48071 * 17 16 15 27 27 C 1.46963 * 120.59877 * 0.02562 * 14 12 11 28 28 H 1.09002 * 109.47118 * 59.99449 * 1 2 3 29 29 H 1.08992 * 109.47346 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46389 * 299.99738 * 1 2 3 31 31 H 1.09006 * 109.46711 * 240.00505 * 2 1 3 32 32 H 1.08994 * 109.47433 * 120.01340 * 2 1 3 33 33 H 1.09000 * 109.46361 * 60.00686 * 3 2 1 34 34 H 1.08999 * 109.47220 * 300.00874 * 3 2 1 35 35 H 1.08994 * 109.47193 * 29.99888 * 5 4 3 36 36 H 1.09000 * 109.47018 * 149.99959 * 5 4 3 37 37 H 1.08997 * 109.47337 * 300.00598 * 6 5 4 38 38 H 1.09004 * 109.46817 * 59.99978 * 6 5 4 39 39 H 1.09004 * 109.47194 * 180.02562 * 7 6 5 40 40 H 1.09003 * 109.47634 * 299.99730 * 7 6 5 41 41 H 1.09004 * 109.47384 * 60.00355 * 7 6 5 42 42 H 1.08998 * 109.46894 * 60.00413 * 10 8 4 43 43 H 1.08994 * 109.47572 * 300.00147 * 10 8 4 44 44 H 1.09001 * 109.47325 * 60.00276 * 11 10 8 45 45 H 1.09007 * 109.47235 * 300.00322 * 11 10 8 46 46 H 1.08996 * 109.61476 * 115.50253 * 15 14 12 47 47 H 1.09010 * 109.75120 * 355.07348 * 15 14 12 48 48 H 1.09003 * 109.60871 * 190.82753 * 16 15 14 49 49 H 1.08999 * 109.74926 * 70.40483 * 16 15 14 50 50 H 0.97003 * 120.00012 * 180.02562 * 21 20 18 51 51 H 1.08998 * 109.61464 * 64.26783 * 26 17 16 52 52 H 1.09004 * 109.60410 * 184.77119 * 26 17 16 53 53 H 1.08997 * 109.60925 * 244.49552 * 27 14 12 54 54 H 1.09004 * 109.60691 * 4.83230 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2382 1.4420 1.2679 6 6 4.4934 2.8845 1.7097 7 6 5.2584 2.8841 3.0347 8 6 4.1785 1.4427 -1.1680 9 8 5.3913 1.4421 -1.1686 10 6 3.4244 1.4424 -2.4728 11 6 4.4182 1.4434 -3.6362 12 6 3.6641 1.4437 -4.9410 13 8 2.4513 1.4428 -4.9405 14 7 4.3375 1.4440 -6.1084 15 6 3.6154 1.4438 -7.3884 16 6 4.0966 0.2500 -8.2224 17 7 5.5662 0.2501 -8.2382 18 6 6.2503 0.2494 -9.4244 19 1 7.2344 0.6909 -9.4804 20 6 5.6814 -0.3235 -10.5535 21 7 4.6644 -1.1500 -10.4308 22 14 6.3590 0.0784 -12.2472 23 1 7.7856 -0.3279 -12.3188 24 1 5.5831 -0.6568 -13.2781 25 1 6.2476 1.5390 -12.4912 26 6 6.2882 0.2446 -6.9582 27 6 5.8071 1.4435 -6.1243 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5140 0.8898 33 1 1.6768 1.9562 0.8901 34 1 1.6767 1.9564 -0.8899 35 1 3.6494 0.9281 2.0276 36 1 5.1905 0.9282 1.1370 37 1 5.0821 3.3984 0.9499 38 1 3.5410 3.3983 1.8405 39 1 5.4399 3.9117 3.3498 40 1 4.6692 2.3703 3.7944 41 1 6.2107 2.3701 2.9043 42 1 2.7975 2.3322 -2.5303 43 1 2.7980 0.5523 -2.5304 44 1 5.0455 0.5538 -3.5789 45 1 5.0443 2.3338 -3.5785 46 1 3.8203 2.3706 -7.9243 47 1 2.5442 1.3553 -7.2071 48 1 3.7197 0.3398 -9.2413 49 1 3.7355 -0.6782 -7.7794 50 1 4.2670 -1.5506 -11.2198 51 1 6.0798 -0.6826 -6.4245 52 1 7.3592 0.3309 -7.1421 53 1 6.1684 2.3703 -6.5699 54 1 6.1839 1.3563 -5.1052 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353652862.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:10 Heat of formation + Delta-G solvation = -81.302511 kcal Electronic energy + Delta-G solvation = -30432.114520 eV Core-core repulsion = 26403.345382 eV Total energy + Delta-G solvation = -4028.769138 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.42971 -40.74899 -38.47843 -37.56025 -35.63968 -35.35124 -33.89738 -33.09291 -33.00169 -31.87140 -28.97321 -28.06430 -27.22704 -25.85574 -25.11515 -24.17584 -22.81258 -22.54645 -21.92230 -20.11526 -19.88886 -18.93897 -18.20978 -17.63878 -17.27848 -16.97475 -16.70469 -16.62396 -16.14227 -15.62095 -15.58548 -15.49227 -15.31762 -15.04384 -14.86538 -14.80814 -14.28310 -14.20509 -14.08918 -13.53663 -13.46586 -13.25829 -13.10804 -13.01095 -12.98093 -12.81955 -12.59565 -12.50955 -12.45524 -12.33225 -12.28121 -12.21570 -12.06990 -12.02413 -11.85686 -11.68839 -11.61123 -11.55003 -10.83817 -10.79841 -10.60221 -9.82291 -9.67557 -8.66739 -7.88972 -5.37982 1.48144 1.50568 1.57351 1.57643 1.62205 1.85604 2.17599 2.51091 3.25665 3.34396 3.59238 3.78770 3.81070 3.97479 4.01609 4.03789 4.10853 4.20837 4.23676 4.27927 4.36442 4.42133 4.45491 4.50354 4.55060 4.56228 4.62467 4.66505 4.72401 4.78130 4.79697 4.83974 4.88268 4.88528 4.92725 4.98943 5.05442 5.17251 5.19468 5.23445 5.23604 5.25120 5.37316 5.44565 5.45914 5.59833 5.64561 5.67460 6.33732 6.34718 6.51030 7.08733 7.12714 7.16622 7.78183 8.31758 9.16164 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019994 B = 0.002153 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.050872 B =13003.071510 C =13931.875332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.104 3.896 4 N -0.609 5.609 5 C 0.112 3.888 6 C -0.134 4.134 7 C -0.146 4.146 8 C 0.515 3.485 9 O -0.575 6.575 10 C -0.116 4.116 11 C -0.114 4.114 12 C 0.510 3.490 13 O -0.585 6.585 14 N -0.603 5.603 15 C 0.103 3.897 16 C 0.169 3.831 17 N -0.609 5.609 18 C -0.264 4.264 19 H 0.074 0.926 20 C -0.052 4.052 21 N -0.937 5.937 22 Si 0.971 3.029 23 H -0.274 1.274 24 H -0.297 1.297 25 H -0.276 1.276 26 C 0.125 3.875 27 C 0.098 3.902 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.110 0.890 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.070 0.930 49 H -0.008 1.008 50 H 0.251 0.749 51 H 0.015 0.985 52 H 0.079 0.921 53 H 0.076 0.924 54 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.883 7.887 27.353 28.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C -0.019 4.019 4 N -0.341 5.341 5 C -0.010 4.010 6 C -0.172 4.172 7 C -0.204 4.204 8 C 0.305 3.695 9 O -0.455 6.455 10 C -0.156 4.156 11 C -0.154 4.154 12 C 0.300 3.700 13 O -0.467 6.467 14 N -0.335 5.335 15 C -0.022 4.022 16 C 0.043 3.957 17 N -0.333 5.333 18 C -0.394 4.394 19 H 0.092 0.908 20 C -0.247 4.247 21 N -0.582 5.582 22 Si 0.799 3.201 23 H -0.200 1.200 24 H -0.223 1.223 25 H -0.202 1.202 26 C -0.001 4.001 27 C -0.025 4.025 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.126 0.874 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.128 0.872 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.088 0.912 49 H 0.010 0.990 50 H 0.060 0.940 51 H 0.033 0.967 52 H 0.097 0.903 53 H 0.094 0.906 54 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.930 7.799 27.231 28.752 hybrid contribution 0.205 -0.395 -1.455 1.521 sum -4.726 7.404 25.776 27.231 Atomic orbital electron populations 1.21686 0.94109 1.02286 1.02586 1.21919 0.97045 0.96745 1.02204 1.21916 0.77456 0.97562 1.04918 1.48085 1.07832 1.72572 1.05585 1.21617 0.97318 0.97524 0.84506 1.21817 1.01055 0.96524 0.97833 1.21672 1.00139 1.02365 0.96237 1.20808 0.87496 0.74970 0.86262 1.90683 1.15374 1.51396 1.88019 1.21361 0.98296 1.06086 0.89855 1.21335 0.98561 1.06136 0.89339 1.21111 0.87717 0.75148 0.86056 1.90619 1.15269 1.52810 1.87954 1.48142 1.08088 1.71588 1.05656 1.22092 0.96602 0.99582 0.83903 1.20895 0.84009 0.92391 0.98437 1.44273 1.01338 1.86061 1.01611 1.19527 1.02049 1.30489 0.87297 0.90786 1.25881 0.99647 0.96705 1.02486 1.70182 1.27843 1.31122 1.29096 0.85289 0.77779 0.77753 0.79291 1.19975 1.22338 1.20229 1.21554 0.96851 0.95107 0.86598 1.22444 0.78225 0.99752 1.02114 0.92676 0.92556 0.91128 0.93202 0.91232 0.87847 0.89664 0.88191 0.91815 0.93974 0.90813 0.92082 0.91165 0.93166 0.87355 0.88145 0.88090 0.87170 0.91709 0.90351 0.91202 0.98978 0.94018 0.96724 0.90278 0.90585 0.87033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 71.98 0.71 -0.79 16 2 C -0.14 -1.65 6.26 30.60 0.19 -1.46 16 3 C 0.10 1.15 5.21 86.38 0.45 1.60 16 4 N -0.61 -9.95 2.47 -821.80 -2.03 -11.98 16 5 C 0.11 1.60 5.41 86.38 0.47 2.07 16 6 C -0.13 -1.75 6.26 30.59 0.19 -1.56 16 7 C -0.15 -1.50 9.91 71.98 0.71 -0.79 16 8 C 0.52 11.58 7.67 87.66 0.67 12.26 16 9 O -0.57 -16.80 15.56 -3.05 -0.05 -16.84 16 10 C -0.12 -2.54 3.54 29.85 0.11 -2.43 16 11 C -0.11 -2.87 3.33 29.85 0.10 -2.77 16 12 C 0.51 16.84 7.70 87.66 0.67 17.51 16 13 O -0.59 -22.35 15.39 -3.02 -0.05 -22.40 16 14 N -0.60 -21.45 2.95 -817.24 -2.41 -23.86 16 15 C 0.10 4.18 6.59 86.42 0.57 4.75 16 16 C 0.17 8.39 5.51 86.42 0.48 8.86 16 17 N -0.61 -30.25 2.96 -697.44 -2.06 -32.31 16 18 C -0.26 -14.16 9.57 84.03 0.80 -13.35 16 19 H 0.07 3.79 7.89 -2.91 -0.02 3.77 16 20 C -0.05 -2.86 4.91 84.86 0.42 -2.44 16 21 N -0.94 -55.44 11.20 21.65 0.24 -55.20 16 22 Si 0.97 44.31 29.59 68.60 2.03 46.34 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 24 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 26 C 0.12 4.95 6.70 86.55 0.58 5.53 16 27 C 0.10 3.10 6.52 86.55 0.56 3.66 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.78 7.22 -2.38 -0.02 0.76 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 0.69 8.07 -2.39 -0.02 0.67 16 34 H 0.09 0.98 6.44 -2.39 -0.02 0.96 16 35 H 0.10 0.91 8.07 -2.39 -0.02 0.89 16 36 H 0.06 1.19 7.42 -2.39 -0.02 1.17 16 37 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 40 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 42 H 0.11 2.17 7.36 -2.39 -0.02 2.16 16 43 H 0.10 2.22 7.14 -2.39 -0.02 2.20 16 44 H 0.10 2.57 7.68 -2.39 -0.02 2.55 16 45 H 0.11 2.54 7.87 -2.38 -0.02 2.52 16 46 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 47 H 0.08 3.21 7.00 -2.38 -0.02 3.19 16 48 H 0.07 3.85 6.00 -2.39 -0.01 3.84 16 49 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 50 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 51 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 52 H 0.08 2.92 7.93 -2.39 -0.02 2.90 16 53 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 54 H 0.11 2.76 5.91 -2.39 -0.01 2.74 16 Total: -1.00 -71.21 422.60 4.21 -67.00 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.85 Total: 18.63 kcal Atomic # 6 Polarization: 22.94 SS G_CDS: 7.69 Total: 30.63 kcal Atomic # 7 Polarization: -117.09 SS G_CDS: -6.26 Total: -123.35 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -0.09 Total: -39.24 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -71.21 4.21 -67.00 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353652862.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.307 kcal (2) G-P(sol) polarization free energy of solvation -71.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds