Wall clock time and date at job start Wed Apr 1 2020 00:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47380 * 2 1 4 4 N 1.46905 * 109.47409 * 240.00321 * 2 1 3 5 5 C 1.47015 * 110.99983 * 66.04196 * 4 2 1 6 6 C 1.53091 * 109.25860 * 182.39553 * 5 4 2 7 7 O 1.43012 * 109.26001 * 303.15241 * 6 5 4 8 8 C 1.43020 * 113.73800 * 58.67262 * 7 6 5 9 9 H 1.08998 * 109.50384 * 61.30701 * 8 7 6 10 10 C 1.50703 * 109.50843 * 181.39712 * 8 7 6 11 11 O 1.21281 * 119.99812 * 4.99304 * 10 8 7 12 12 N 1.34769 * 119.99856 * 185.00255 * 10 8 7 13 13 C 1.46499 * 119.99999 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.47332 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.49484 * 54.99375 * 14 13 12 16 16 C 1.53044 * 109.49551 * 175.05976 * 14 13 12 17 17 C 1.53043 * 109.53480 * 181.28173 * 16 14 13 18 18 C 1.53196 * 109.33987 * 298.68887 * 17 16 14 19 19 N 1.46915 * 108.77941 * 54.61896 * 18 17 16 20 20 C 1.36930 * 120.63391 * 126.41108 * 19 18 17 21 21 H 1.08000 * 120.00010 * 331.81201 * 20 19 18 22 22 C 1.38814 * 120.00241 * 151.80816 * 20 19 18 23 23 N 1.31620 * 119.99929 * 343.08444 * 22 20 19 24 24 Si 1.86803 * 120.00170 * 163.08448 * 22 20 19 25 25 H 1.48493 * 109.47124 * 89.99887 * 24 22 20 26 26 H 1.48501 * 109.47233 * 210.00580 * 24 22 20 27 27 H 1.48497 * 109.46897 * 330.00015 * 24 22 20 28 28 C 1.46931 * 118.73826 * 306.39182 * 19 18 17 29 29 C 1.47011 * 111.00226 * 189.68208 * 4 2 1 30 30 H 1.09002 * 109.47236 * 59.99860 * 1 2 3 31 31 H 1.08995 * 109.47048 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47315 * 300.00136 * 1 2 3 33 33 H 1.09000 * 109.47347 * 120.00679 * 2 1 3 34 34 H 1.09005 * 109.46643 * 60.00051 * 3 2 1 35 35 H 1.09003 * 109.47213 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.47050 * 300.00254 * 3 2 1 37 37 H 1.09000 * 109.51092 * 302.33398 * 5 4 2 38 38 H 1.09008 * 109.50030 * 62.46101 * 5 4 2 39 39 H 1.08998 * 109.51104 * 63.08921 * 6 5 4 40 40 H 1.09002 * 109.50670 * 183.17988 * 6 5 4 41 41 H 0.96999 * 120.00230 * 359.97438 * 12 10 8 42 42 H 1.09001 * 109.46764 * 299.99536 * 13 12 10 43 43 H 1.09001 * 109.47245 * 59.99342 * 13 12 10 44 44 H 1.08996 * 109.46184 * 301.33123 * 16 14 13 45 45 H 1.09000 * 109.45895 * 61.30324 * 16 14 13 46 46 H 1.08995 * 109.49675 * 178.71573 * 17 16 14 47 47 H 1.09002 * 109.47126 * 58.63646 * 17 16 14 48 48 H 1.09001 * 109.58314 * 294.82850 * 18 17 16 49 49 H 1.08999 * 109.69754 * 174.47744 * 18 17 16 50 50 H 0.96995 * 119.99833 * 179.97438 * 23 22 20 51 51 H 1.08998 * 109.58387 * 293.82265 * 28 19 18 52 52 H 1.09000 * 109.58846 * 173.39527 * 28 19 18 53 53 H 1.09000 * 109.50374 * 297.54055 * 29 4 2 54 54 H 1.08992 * 109.50638 * 57.67058 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 1.6699 0.0526 -2.4177 6 6 2.1452 -0.7319 -3.6434 7 8 3.5521 -0.9660 -3.5371 8 6 3.9281 -1.6901 -2.3625 9 1 3.4554 -2.6721 -2.3734 10 6 5.4260 -1.8528 -2.3296 11 8 6.1127 -1.3178 -3.1740 12 7 6.0023 -2.5931 -1.3620 13 6 7.4584 -2.7509 -1.3297 14 6 7.8498 -3.6305 -0.1406 15 1 7.3114 -4.5767 -0.1952 16 6 9.3564 -3.8972 -0.1767 17 6 9.7439 -4.8033 0.9943 18 6 9.4081 -4.0996 2.3130 19 7 7.9914 -3.7108 2.2942 20 6 7.1519 -4.0838 3.3096 21 1 7.3464 -4.9887 3.8661 22 6 6.0509 -3.2989 3.6237 23 7 5.9858 -2.0556 3.1968 24 14 4.6618 -4.0073 4.6523 25 1 4.9357 -3.7611 6.0908 26 1 3.3827 -3.3550 4.2732 27 1 4.5626 -5.4691 4.4105 28 6 7.4926 -2.9136 1.1652 29 6 3.4709 -0.9152 -1.1237 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9564 -0.8900 37 1 0.5889 0.1839 -2.4663 38 1 2.1553 1.0285 -2.3993 39 1 1.6201 -1.6859 -3.6911 40 1 1.9385 -0.1570 -4.5461 41 1 5.4530 -3.0208 -0.6866 42 1 7.7936 -3.2198 -2.2548 43 1 7.9277 -1.7724 -1.2275 44 1 9.6164 -4.3856 -1.1157 45 1 9.8944 -2.9525 -0.0976 46 1 10.8131 -5.0114 0.9549 47 1 9.1881 -5.7387 0.9293 48 1 10.0296 -3.2107 2.4214 49 1 9.5901 -4.7768 3.1475 50 1 5.2163 -1.5073 3.4160 51 1 7.9579 -1.9280 1.1801 52 1 6.4102 -2.8101 1.2409 53 1 3.9849 0.0452 -1.0848 54 1 3.7045 -1.4904 -0.2278 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354086992.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:45 Heat of formation + Delta-G solvation = -81.540043 kcal Electronic energy + Delta-G solvation = -31843.178306 eV Core-core repulsion = 27814.398868 eV Total energy + Delta-G solvation = -4028.779438 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.57894 -40.24455 -39.25936 -37.78417 -36.15553 -34.84834 -33.36244 -32.62940 -32.12494 -31.43330 -28.41638 -28.16286 -27.23442 -26.49522 -25.42946 -23.88872 -23.18378 -22.30029 -21.49998 -20.63060 -20.52334 -18.77442 -18.40404 -17.91112 -17.16249 -16.98440 -16.65306 -16.55723 -16.01079 -15.89911 -15.73510 -15.67861 -15.22798 -15.15956 -15.01397 -14.82684 -14.52724 -14.02973 -13.94171 -13.88756 -13.75913 -13.60680 -13.13780 -12.99996 -12.91396 -12.87502 -12.82291 -12.52567 -12.40581 -12.22443 -12.14183 -11.98514 -11.81988 -11.78785 -11.63910 -11.54663 -11.29025 -11.08922 -10.86363 -10.73458 -10.52705 -10.12689 -9.46258 -8.63683 -7.84107 -5.29710 1.42934 1.47407 1.50437 1.58950 1.80085 2.53086 2.62891 3.01039 3.28626 3.59127 3.62223 3.67615 3.84352 3.89773 3.92364 4.00514 4.08541 4.13022 4.15533 4.20517 4.27405 4.36092 4.39176 4.47264 4.53842 4.62111 4.63455 4.64388 4.71286 4.80927 4.82656 4.87861 4.88438 4.89034 4.94825 5.01189 5.04618 5.16421 5.19877 5.22609 5.33857 5.34505 5.39442 5.46303 5.56980 5.69061 5.79156 5.82154 5.94452 5.98826 6.41802 6.44563 7.09931 7.18190 7.88681 8.41472 9.21017 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009618 B = 0.004072 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.580762 B = 6874.470307 C = 9252.330519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.070 3.930 3 C -0.183 4.183 4 N -0.526 5.526 5 C 0.009 3.991 6 C 0.058 3.942 7 O -0.384 6.384 8 C 0.088 3.912 9 H 0.111 0.889 10 C 0.519 3.481 11 O -0.568 6.568 12 N -0.710 5.710 13 C 0.139 3.861 14 C -0.111 4.111 15 H 0.073 0.927 16 C -0.099 4.099 17 C -0.121 4.121 18 C 0.135 3.865 19 N -0.611 5.611 20 C -0.265 4.265 21 H 0.063 0.937 22 C -0.040 4.040 23 N -0.927 5.927 24 Si 0.958 3.042 25 H -0.291 1.291 26 H -0.288 1.288 27 H -0.272 1.272 28 C 0.190 3.810 29 C 0.036 3.964 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.035 0.965 36 H 0.069 0.931 37 H 0.115 0.885 38 H 0.041 0.959 39 H 0.073 0.927 40 H 0.123 0.877 41 H 0.410 0.590 42 H 0.076 0.924 43 H 0.050 0.950 44 H 0.080 0.920 45 H 0.053 0.947 46 H 0.082 0.918 47 H 0.058 0.942 48 H 0.008 0.992 49 H 0.051 0.949 50 H 0.249 0.751 51 H -0.015 1.015 52 H 0.066 0.934 53 H 0.032 0.968 54 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.397 0.987 -10.931 14.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.038 4.038 3 C -0.241 4.241 4 N -0.251 5.251 5 C -0.118 4.118 6 C -0.018 4.018 7 O -0.302 6.302 8 C 0.027 3.973 9 H 0.128 0.872 10 C 0.304 3.696 11 O -0.447 6.447 12 N -0.362 5.362 13 C 0.015 3.985 14 C -0.132 4.132 15 H 0.092 0.908 16 C -0.137 4.137 17 C -0.160 4.160 18 C 0.010 3.990 19 N -0.334 5.334 20 C -0.395 4.395 21 H 0.080 0.920 22 C -0.236 4.236 23 N -0.573 5.573 24 Si 0.786 3.214 25 H -0.218 1.218 26 H -0.214 1.214 27 H -0.197 1.197 28 C 0.064 3.936 29 C -0.093 4.093 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.133 0.867 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.141 0.859 41 H 0.246 0.754 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.099 0.901 45 H 0.072 0.928 46 H 0.101 0.899 47 H 0.076 0.924 48 H 0.026 0.974 49 H 0.069 0.931 50 H 0.059 0.941 51 H 0.003 0.997 52 H 0.084 0.916 53 H 0.050 0.950 54 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.114 1.071 -11.642 14.824 hybrid contribution -0.401 0.696 1.583 1.775 sum -9.515 1.767 -10.059 13.958 Atomic orbital electron populations 1.21772 0.91963 1.02721 1.02693 1.21800 0.97417 0.92455 0.92098 1.22433 1.00388 0.98018 1.03305 1.62517 1.11041 1.48325 1.03194 1.22994 1.03211 0.95810 0.89796 1.23022 0.79557 1.00842 0.98419 1.88072 1.25635 1.75922 1.40589 1.21839 0.91083 0.97802 0.86590 0.87200 1.20461 0.90042 0.78103 0.80967 1.90665 1.65496 1.48608 1.39913 1.45941 1.08893 1.51529 1.29809 1.21320 0.79180 0.99483 0.98530 1.21915 0.98070 0.98805 0.94362 0.90829 1.21363 0.93672 0.99770 0.98940 1.21864 1.01082 0.98350 0.94693 1.21114 0.84911 0.96182 0.96812 1.44315 1.04885 1.62749 1.21443 1.19465 1.05603 1.03332 1.11108 0.91958 1.25657 1.02517 0.94933 1.00517 1.70190 1.30147 1.06569 1.50375 0.85434 0.79351 0.78245 0.78348 1.21817 1.21387 1.19678 1.20582 0.98902 0.89964 0.84157 1.22511 0.89763 0.99441 0.97575 0.91328 0.91910 0.91250 0.91242 0.90948 0.94618 0.91195 0.86692 0.94122 0.90873 0.85903 0.75408 0.90576 0.93203 0.90123 0.92818 0.89946 0.92353 0.97384 0.93061 0.94149 0.99688 0.91611 0.95014 0.89465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.12 71.98 0.66 -1.53 16 2 C 0.07 1.54 2.92 44.91 0.13 1.67 16 3 C -0.18 -3.94 8.43 71.98 0.61 -3.33 16 4 N -0.53 -12.07 4.68 -869.97 -4.07 -16.14 16 5 C 0.01 0.18 4.80 86.31 0.41 0.59 16 6 C 0.06 1.12 7.01 72.01 0.50 1.62 16 7 O -0.38 -11.17 10.01 -130.02 -1.30 -12.47 16 8 C 0.09 2.50 3.22 29.88 0.10 2.60 16 9 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 10 C 0.52 17.66 7.18 87.66 0.63 18.29 16 11 O -0.57 -23.61 16.51 15.93 0.26 -23.35 16 12 N -0.71 -22.68 5.30 -463.06 -2.45 -25.13 16 13 C 0.14 4.51 5.07 86.38 0.44 4.95 16 14 C -0.11 -3.81 2.37 -10.71 -0.03 -3.84 16 15 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 16 C -0.10 -2.99 5.17 30.62 0.16 -2.83 16 17 C -0.12 -3.77 6.08 30.67 0.19 -3.58 16 18 C 0.14 5.45 6.52 86.37 0.56 6.02 16 19 N -0.61 -29.51 2.99 -699.11 -2.09 -31.60 16 20 C -0.26 -14.04 9.58 84.04 0.81 -13.23 16 21 H 0.06 3.26 7.88 -2.91 -0.02 3.23 16 22 C -0.04 -2.14 4.92 84.86 0.42 -1.72 16 23 N -0.93 -51.72 11.20 21.65 0.24 -51.47 16 24 Si 0.96 42.71 29.59 68.60 2.03 44.74 16 25 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 26 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 28 C 0.19 8.55 4.39 86.36 0.38 8.92 16 29 C 0.04 1.01 4.62 86.32 0.40 1.41 16 30 H 0.07 0.91 6.51 -2.39 -0.02 0.90 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.79 8.04 -2.39 -0.02 1.77 16 34 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.03 0.93 6.73 -2.39 -0.02 0.91 16 36 H 0.07 1.32 6.38 -2.39 -0.02 1.30 16 37 H 0.12 1.58 6.37 -2.39 -0.02 1.56 16 38 H 0.04 0.86 6.37 -2.38 -0.02 0.84 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.41 12.54 7.58 -92.71 -0.70 11.84 16 42 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 49 H 0.05 2.03 7.93 -2.39 -0.02 2.02 16 50 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 51 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 52 H 0.07 3.22 5.27 -2.39 -0.01 3.21 16 53 H 0.03 1.01 6.71 -2.39 -0.02 1.00 16 54 H 0.09 2.60 7.97 -2.39 -0.02 2.58 16 Total: -1.00 -67.33 407.18 -0.85 -68.19 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: 0.17 Total: 31.21 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 6.36 Total: 16.01 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -8.37 Total: -124.34 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -1.04 Total: -35.82 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -67.33 -0.85 -68.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354086992.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.353 kcal (2) G-P(sol) polarization free energy of solvation -67.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds