Wall clock time and date at job start Wed Apr 1 2020 00:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47261 * 2 1 4 4 N 1.46900 * 109.47247 * 119.99960 * 2 1 3 5 5 C 1.47008 * 111.00067 * 51.36502 * 4 2 1 6 6 C 1.53103 * 109.26055 * 182.39636 * 5 4 2 7 7 O 1.43016 * 109.25510 * 303.14944 * 6 5 4 8 8 C 1.43020 * 113.74145 * 58.66729 * 7 6 5 9 9 H 1.09003 * 109.53665 * 61.28781 * 8 7 6 10 10 C 1.50693 * 109.50857 * 181.39359 * 8 7 6 11 11 O 1.21277 * 119.99885 * 4.78590 * 10 8 7 12 12 N 1.34776 * 119.99830 * 184.78383 * 10 8 7 13 13 C 1.46501 * 120.00126 * 179.97438 * 12 10 8 14 14 C 1.52996 * 109.47618 * 179.97438 * 13 12 10 15 15 H 1.09001 * 109.49753 * 304.94372 * 14 13 12 16 16 C 1.53033 * 109.50105 * 184.83883 * 14 13 12 17 17 C 1.53044 * 109.53734 * 178.68528 * 16 14 13 18 18 C 1.52761 * 109.38356 * 61.24440 * 17 16 14 19 19 N 1.46932 * 109.00441 * 305.58599 * 18 17 16 20 20 C 1.36936 * 120.62484 * 233.58057 * 19 18 17 21 21 H 1.08003 * 119.99356 * 151.81679 * 20 19 18 22 22 C 1.38803 * 120.00756 * 331.82023 * 20 19 18 23 23 N 1.31618 * 119.99736 * 335.49342 * 22 20 19 24 24 Si 1.86799 * 120.00355 * 155.49660 * 22 20 19 25 25 H 1.48498 * 109.47329 * 180.02562 * 24 22 20 26 26 H 1.48495 * 109.47105 * 59.99889 * 24 22 20 27 27 H 1.48503 * 109.46825 * 299.99639 * 24 22 20 28 28 C 1.46922 * 118.73835 * 53.31141 * 19 18 17 29 29 C 1.47016 * 111.00266 * 175.00065 * 4 2 1 30 30 H 1.09003 * 109.46859 * 300.00266 * 1 2 3 31 31 H 1.08994 * 109.47206 * 60.00141 * 1 2 3 32 32 H 1.09002 * 109.46963 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47381 * 239.99965 * 2 1 3 34 34 H 1.09000 * 109.47169 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46657 * 299.99719 * 3 2 1 36 36 H 1.09003 * 109.46896 * 59.99913 * 3 2 1 37 37 H 1.09004 * 109.50981 * 302.32462 * 5 4 2 38 38 H 1.08996 * 109.51084 * 62.45771 * 5 4 2 39 39 H 1.08997 * 109.50764 * 63.08308 * 6 5 4 40 40 H 1.09003 * 109.50771 * 183.21956 * 6 5 4 41 41 H 0.96997 * 120.00303 * 0.02562 * 12 10 8 42 42 H 1.09009 * 109.46744 * 60.00038 * 13 12 10 43 43 H 1.08997 * 109.47017 * 300.00696 * 13 12 10 44 44 H 1.09003 * 109.46353 * 298.70747 * 16 14 13 45 45 H 1.08996 * 109.45829 * 58.68244 * 16 14 13 46 46 H 1.09006 * 109.49810 * 181.31953 * 17 16 14 47 47 H 1.09002 * 109.49850 * 301.38294 * 17 16 14 48 48 H 1.09003 * 109.50983 * 185.70669 * 18 17 16 49 49 H 1.08993 * 109.43265 * 65.42107 * 18 17 16 50 50 H 0.97002 * 120.00481 * 354.24867 * 23 22 20 51 51 H 1.08999 * 109.58741 * 66.42770 * 28 19 18 52 52 H 1.08998 * 109.58390 * 186.85153 * 28 19 18 53 53 H 1.08998 * 109.50647 * 57.67172 * 29 4 2 54 54 H 1.08996 * 109.54109 * 297.56457 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.3875 -2.0121 1.3410 6 6 1.8798 -2.6722 2.6317 7 8 3.3072 -2.7559 2.6038 8 6 3.9558 -1.4886 2.4674 9 1 3.7040 -0.8567 3.3191 10 6 5.4483 -1.6902 2.4143 11 8 5.9084 -2.8122 2.3986 12 7 6.2717 -0.6237 2.3843 13 6 7.7226 -0.8196 2.3333 14 6 8.4206 0.5416 2.3068 15 1 8.0335 1.1329 1.4769 16 6 9.9275 0.3398 2.1321 17 6 10.6228 1.7019 2.0726 18 6 10.3837 2.4508 3.3824 19 7 8.9382 2.5213 3.6362 20 6 8.3295 3.7248 3.8733 21 1 7.2902 3.8644 3.6149 22 6 9.0481 4.7653 4.4457 23 7 10.1042 4.5059 5.1871 24 14 8.5162 6.5337 4.1640 25 1 9.4428 7.4490 4.8775 26 1 7.1369 6.7239 4.6801 27 1 8.5467 6.8341 2.7100 28 6 8.1574 1.2768 3.6248 29 6 3.4844 -0.8166 1.1751 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 0.3046 -1.8943 1.3826 38 1 1.6537 -2.6366 0.4883 39 1 1.5669 -2.0750 3.4881 40 1 1.4579 -3.6741 2.7120 41 1 5.9037 0.2737 2.3973 42 1 7.9824 -1.3782 1.4340 43 1 8.0452 -1.3767 3.2129 44 1 10.3177 -0.2306 2.9750 45 1 10.1160 -0.2046 1.2068 46 1 11.6931 1.5578 1.9247 47 1 10.2159 2.2822 1.2445 48 1 10.7907 3.4590 3.3048 49 1 10.8725 1.9190 4.1986 50 1 10.3321 3.5880 5.4025 51 1 8.4609 0.6473 4.4613 52 1 7.0960 1.5107 3.7072 53 1 3.9323 0.1740 1.0957 54 1 3.7849 -1.4215 0.3197 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354086993.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:49 Heat of formation + Delta-G solvation = -85.353011 kcal Electronic energy + Delta-G solvation = -31088.574180 eV Core-core repulsion = 27059.629399 eV Total energy + Delta-G solvation = -4028.944781 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.57913 -40.25741 -39.42101 -37.73320 -36.45966 -34.90550 -33.22757 -32.85994 -32.22822 -31.68887 -28.64647 -27.98312 -27.03978 -26.56793 -25.08141 -23.94051 -22.92508 -22.36110 -21.49162 -21.08488 -20.62407 -19.38003 -18.55180 -17.89076 -17.37536 -16.95351 -16.48919 -16.31250 -16.23215 -16.11710 -15.71686 -15.45461 -15.42191 -15.30358 -15.14890 -14.91042 -14.64980 -14.29693 -14.00807 -13.73488 -13.66951 -13.33917 -13.27845 -13.23190 -12.85979 -12.76550 -12.68410 -12.62574 -12.42087 -12.12281 -11.98143 -11.91135 -11.79205 -11.74883 -11.68761 -11.56859 -11.47022 -11.10066 -10.89637 -10.76020 -10.45067 -10.19335 -9.49441 -8.91532 -8.22031 -5.38577 1.40120 1.60260 1.67624 1.74101 1.85893 2.59591 2.67537 2.97455 3.23412 3.47813 3.57032 3.65039 3.84934 3.86288 3.88981 3.92556 3.96201 3.98881 4.05227 4.25432 4.27009 4.36213 4.40243 4.44278 4.44806 4.49676 4.58659 4.65216 4.68101 4.77203 4.78510 4.82242 4.84643 4.85647 4.92813 4.94150 5.00500 5.04350 5.10310 5.20153 5.24151 5.28420 5.30193 5.35931 5.37784 5.55186 5.82735 5.85640 5.95171 5.97334 6.40276 6.41424 7.06912 7.07633 7.79722 8.25107 9.02754 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011185 B = 0.002854 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.784961 B = 9809.592075 C =11416.684474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.074 3.926 3 C -0.147 4.147 4 N -0.533 5.533 5 C 0.013 3.987 6 C 0.057 3.943 7 O -0.387 6.387 8 C 0.083 3.917 9 H 0.105 0.895 10 C 0.520 3.480 11 O -0.568 6.568 12 N -0.711 5.711 13 C 0.138 3.862 14 C -0.099 4.099 15 H 0.078 0.922 16 C -0.098 4.098 17 C -0.125 4.125 18 C 0.151 3.849 19 N -0.616 5.616 20 C -0.353 4.353 21 H 0.057 0.943 22 C -0.078 4.078 23 N -0.946 5.946 24 Si 1.113 2.887 25 H -0.296 1.296 26 H -0.274 1.274 27 H -0.278 1.278 28 C 0.154 3.846 29 C 0.036 3.964 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.116 0.884 38 H 0.036 0.964 39 H 0.069 0.931 40 H 0.120 0.880 41 H 0.412 0.588 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.055 0.945 48 H 0.042 0.958 49 H -0.001 1.001 50 H 0.253 0.747 51 H 0.005 0.995 52 H 0.055 0.945 53 H 0.105 0.895 54 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.692 -10.760 -12.301 24.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 C -0.204 4.204 4 N -0.259 5.259 5 C -0.114 4.114 6 C -0.019 4.019 7 O -0.306 6.306 8 C 0.021 3.979 9 H 0.123 0.877 10 C 0.306 3.694 11 O -0.446 6.446 12 N -0.364 5.364 13 C 0.014 3.986 14 C -0.119 4.119 15 H 0.097 0.903 16 C -0.136 4.136 17 C -0.164 4.164 18 C 0.026 3.974 19 N -0.341 5.341 20 C -0.483 4.483 21 H 0.074 0.926 22 C -0.274 4.274 23 N -0.588 5.588 24 Si 0.938 3.062 25 H -0.222 1.222 26 H -0.200 1.200 27 H -0.205 1.205 28 C 0.029 3.971 29 C -0.093 4.093 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.138 0.862 41 H 0.249 0.751 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.102 0.898 46 H 0.092 0.908 47 H 0.074 0.926 48 H 0.061 0.939 49 H 0.017 0.983 50 H 0.063 0.937 51 H 0.023 0.977 52 H 0.074 0.926 53 H 0.123 0.877 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -18.023 -9.859 -11.602 23.593 hybrid contribution -0.044 -1.474 -0.473 1.548 sum -18.067 -11.332 -12.076 24.509 Atomic orbital electron populations 1.21924 0.92661 1.02605 1.03058 1.21738 0.96851 0.95160 0.89623 1.21882 1.00943 0.94723 1.02866 1.62330 1.03883 1.19456 1.40247 1.22954 1.01748 0.89010 0.97726 1.23012 0.78747 1.02943 0.97228 1.88081 1.20655 1.27392 1.94436 1.21905 0.88852 0.87039 1.00073 0.87728 1.20471 0.88764 0.84480 0.75731 1.90689 1.78278 1.25250 1.50377 1.45903 1.06952 1.09279 1.74265 1.21306 0.78489 0.96748 1.02029 1.21702 0.96529 0.94457 0.99219 0.90316 1.21347 0.93359 0.96573 1.02303 1.21839 1.00265 0.96565 0.97736 1.20771 0.84579 0.98042 0.94042 1.44337 1.04176 1.02865 1.82686 1.20251 0.98272 0.91509 1.38238 0.92551 1.27175 0.97880 1.07879 0.94427 1.70898 1.31258 1.21914 1.34730 0.82876 0.75480 0.71366 0.76470 1.22234 1.19989 1.20457 1.21018 0.95181 0.86735 0.94201 1.22593 0.90069 1.01469 0.95133 0.91659 0.90930 0.91783 0.94464 0.93022 0.90921 0.91839 0.86629 0.94534 0.91226 0.86210 0.75095 0.90669 0.92416 0.92493 0.89777 0.90801 0.92592 0.93939 0.98278 0.93711 0.97656 0.92610 0.87689 0.94609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.67 71.98 0.62 -0.84 16 2 C 0.07 1.01 2.68 44.92 0.12 1.13 16 3 C -0.15 -1.99 9.10 71.98 0.65 -1.34 16 4 N -0.53 -8.66 4.59 -869.99 -4.00 -12.65 16 5 C 0.01 0.19 5.11 86.32 0.44 0.63 16 6 C 0.06 0.94 7.01 72.02 0.50 1.44 16 7 O -0.39 -9.93 10.01 -130.02 -1.30 -11.23 16 8 C 0.08 1.91 3.22 29.88 0.10 2.00 16 9 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 10 C 0.52 14.77 7.18 87.66 0.63 15.40 16 11 O -0.57 -21.08 16.51 15.95 0.26 -20.82 16 12 N -0.71 -17.78 5.29 -463.07 -2.45 -20.23 16 13 C 0.14 3.72 5.07 86.38 0.44 4.16 16 14 C -0.10 -2.96 2.38 -10.72 -0.03 -2.99 16 15 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 16 C -0.10 -2.87 5.17 30.62 0.16 -2.71 16 17 C -0.13 -4.37 6.06 30.53 0.19 -4.18 16 18 C 0.15 7.02 4.66 86.22 0.40 7.42 16 19 N -0.62 -29.84 2.85 -699.93 -2.00 -31.84 16 20 C -0.35 -19.09 9.49 84.03 0.80 -18.29 16 21 H 0.06 2.98 7.94 -2.91 -0.02 2.96 16 22 C -0.08 -4.34 4.69 84.86 0.40 -3.94 16 23 N -0.95 -57.48 12.42 21.65 0.27 -57.21 16 24 Si 1.11 49.76 29.98 68.60 2.06 51.82 16 25 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 27 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 28 C 0.15 5.99 5.60 86.36 0.48 6.48 16 29 C 0.04 0.69 4.66 86.31 0.40 1.09 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.55 6.26 -2.39 -0.01 0.54 16 33 H 0.04 0.55 8.13 -2.39 -0.02 0.53 16 34 H 0.05 0.76 6.48 -2.39 -0.02 0.74 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.12 1.15 6.05 -2.38 -0.01 1.13 16 38 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.41 8.92 7.56 -92.71 -0.70 8.22 16 42 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 47 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.04 2.26 6.32 -2.39 -0.02 2.24 16 49 H 0.00 -0.04 7.86 -2.39 -0.02 -0.06 16 50 H 0.25 15.74 6.69 -92.71 -0.62 15.12 16 51 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 52 H 0.06 2.09 7.13 -2.39 -0.02 2.07 16 53 H 0.11 1.77 6.20 -2.39 -0.01 1.75 16 54 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -72.45 408.75 -0.53 -72.98 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 0.32 Total: 23.70 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 6.31 Total: 5.48 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -8.18 Total: -121.93 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -1.04 Total: -32.05 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 2.06 Total: 51.82 kcal Total: -72.45 -0.53 -72.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354086993.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.377 kcal (2) G-P(sol) polarization free energy of solvation -72.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds