Wall clock time and date at job start Wed Apr 1 2020 00:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47129 * 2 1 4 4 N 1.46898 * 109.46934 * 120.00224 * 2 1 3 5 5 C 1.46854 * 110.99958 * 50.78871 * 4 2 1 6 6 C 1.53039 * 109.52227 * 185.83752 * 5 4 2 7 7 C 1.53126 * 109.28009 * 300.82107 * 6 5 4 8 8 C 1.53099 * 109.15071 * 57.65227 * 7 6 5 9 9 H 1.09009 * 109.50682 * 62.29317 * 8 7 6 10 10 C 1.53008 * 109.48809 * 182.39661 * 8 7 6 11 11 N 1.46498 * 109.47130 * 294.81642 * 10 8 7 12 12 C 1.34771 * 119.99947 * 180.02562 * 11 10 8 13 13 O 1.21352 * 120.00177 * 359.97438 * 12 11 10 14 14 C 1.49455 * 120.00121 * 179.97438 * 12 11 10 15 15 O 1.21352 * 119.99702 * 359.97438 * 14 12 11 16 16 N 1.34774 * 119.99871 * 179.97438 * 14 12 11 17 17 C 1.46506 * 119.99979 * 179.97438 * 16 14 12 18 18 C 1.52999 * 109.47222 * 179.97438 * 17 16 14 19 19 C 1.52999 * 109.47089 * 180.02562 * 18 17 16 20 20 C 1.50703 * 109.47112 * 180.02562 * 19 18 17 21 21 H 1.07995 * 119.99580 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99711 * 179.97438 * 20 19 18 23 23 N 1.31506 * 120.00305 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99431 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47002 * 90.00565 * 24 22 20 26 26 H 1.48508 * 109.46933 * 210.00340 * 24 22 20 27 27 H 1.48495 * 109.47587 * 329.99938 * 24 22 20 28 28 C 1.46847 * 110.99897 * 174.99732 * 4 2 1 29 29 H 1.08998 * 109.46874 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47039 * 299.99800 * 1 2 3 31 31 H 1.09003 * 109.46858 * 60.00137 * 1 2 3 32 32 H 1.09002 * 109.47006 * 240.00112 * 2 1 3 33 33 H 1.09006 * 109.47022 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47453 * 300.00119 * 3 2 1 35 35 H 1.09004 * 109.46567 * 60.00147 * 3 2 1 36 36 H 1.08993 * 109.46229 * 305.85774 * 5 4 2 37 37 H 1.09008 * 109.45822 * 65.82829 * 5 4 2 38 38 H 1.08994 * 109.50227 * 60.75933 * 6 5 4 39 39 H 1.09000 * 109.50337 * 180.88158 * 6 5 4 40 40 H 1.08990 * 109.52264 * 177.55890 * 7 6 5 41 41 H 1.09002 * 109.52383 * 297.68676 * 7 6 5 42 42 H 1.09003 * 109.46318 * 54.81092 * 10 8 7 43 43 H 1.08998 * 109.46956 * 174.80974 * 10 8 7 44 44 H 0.97005 * 120.00337 * 359.97438 * 11 10 8 45 45 H 0.97000 * 120.00604 * 0.02562 * 16 14 12 46 46 H 1.08993 * 109.47143 * 300.00520 * 17 16 14 47 47 H 1.08997 * 109.46693 * 60.00160 * 17 16 14 48 48 H 1.09003 * 109.47133 * 300.00700 * 18 17 16 49 49 H 1.09007 * 109.46695 * 60.00107 * 18 17 16 50 50 H 1.09003 * 109.47169 * 300.00568 * 19 18 17 51 51 H 1.08997 * 109.46832 * 60.00263 * 19 18 17 52 52 H 0.97003 * 120.00334 * 179.97438 * 23 22 20 53 53 H 1.09002 * 109.46481 * 294.17890 * 28 4 2 54 54 H 1.08994 * 109.46283 * 54.15743 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.3779 -2.0050 1.3481 6 6 1.8002 -2.6331 2.6782 7 6 3.3239 -2.7831 2.7053 8 6 3.9675 -1.4092 2.5001 9 1 3.6845 -0.7485 3.3196 10 6 5.4899 -1.5587 2.4661 11 7 5.9653 -2.0133 3.7751 12 6 7.2818 -2.2148 3.9812 13 8 8.0735 -2.0202 3.0823 14 6 7.7669 -2.6780 5.3168 15 8 6.9753 -2.8722 6.2158 16 7 9.0834 -2.8800 5.5226 17 6 9.5590 -3.3335 6.8320 18 6 11.0812 -3.4838 6.7978 19 6 11.5777 -3.9581 8.1650 20 6 13.0772 -4.1055 8.1314 21 1 13.6214 -3.8828 7.2256 22 6 13.7541 -4.5237 9.2575 23 7 13.0913 -4.7944 10.3606 24 14 15.6127 -4.7058 9.2160 25 1 16.2448 -3.4229 9.6156 26 1 16.0264 -5.7762 10.1586 27 1 16.0446 -5.0633 7.8409 28 6 3.4827 -0.8165 1.1751 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9562 0.8901 36 1 0.2949 -1.8837 1.3313 37 1 1.6834 -2.6537 0.5270 38 1 1.4831 -1.9917 3.5004 39 1 1.3361 -3.6140 2.7812 40 1 3.6327 -3.1899 3.6681 41 1 3.6379 -3.4564 1.9077 42 1 5.7663 -2.2890 1.7055 43 1 5.9442 -0.5969 2.2284 44 1 5.3326 -2.1686 4.4938 45 1 9.7162 -2.7244 4.8041 46 1 9.2827 -2.6027 7.5920 47 1 9.1046 -4.2951 7.0704 48 1 11.3571 -4.2149 6.0377 49 1 11.5359 -2.5223 6.5590 50 1 11.3017 -3.2273 8.9253 51 1 11.1230 -4.9196 8.4032 52 1 13.5675 -5.0890 11.1527 53 1 3.7782 -1.4708 0.3548 54 1 3.9283 0.1680 1.0330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356531061.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:04 Heat of formation + Delta-G solvation = -117.958150 kcal Electronic energy + Delta-G solvation = -28853.467387 eV Core-core repulsion = 24823.108741 eV Total energy + Delta-G solvation = -4030.358646 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.77210 -40.55218 -39.60622 -37.39469 -36.98085 -35.40964 -34.97742 -33.04389 -32.52653 -31.48364 -29.13774 -28.52809 -27.17020 -25.72555 -25.08792 -23.81645 -22.83225 -22.36576 -21.40693 -21.03271 -20.66279 -19.48069 -18.51056 -17.95908 -17.41246 -17.26137 -16.79558 -16.49710 -16.32558 -16.14652 -15.82328 -15.72959 -15.37858 -15.03292 -14.87586 -14.65252 -14.36014 -14.27232 -14.18882 -13.77770 -13.72299 -13.53556 -13.35666 -13.07989 -12.90426 -12.75697 -12.66245 -12.56199 -12.53361 -12.40034 -12.08760 -12.05442 -11.98650 -11.69717 -11.58704 -11.55604 -11.27677 -11.22900 -11.09786 -10.71142 -10.54335 -10.36556 -10.26818 -9.24932 -8.19030 -6.29957 0.30177 1.27326 1.42647 1.43326 1.54452 2.10098 2.41960 2.58485 2.89721 3.15047 3.40390 3.67621 3.71031 3.85466 4.05649 4.08551 4.11400 4.18436 4.18662 4.34922 4.41723 4.44644 4.48227 4.52816 4.56423 4.60845 4.76096 4.80372 4.81694 4.86923 4.90910 4.91846 4.98379 4.99846 5.04999 5.06211 5.11813 5.15232 5.19043 5.23132 5.26233 5.34077 5.40507 5.47715 5.51987 5.71169 5.84822 5.87684 6.17382 6.20113 6.23338 6.31873 6.69070 6.86928 6.90227 7.39519 8.92839 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.037449 B = 0.001398 C = 0.001368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.503680 B =20024.387476 C =20459.101322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 C -0.144 4.144 4 N -0.540 5.540 5 C 0.049 3.951 6 C -0.114 4.114 7 C -0.119 4.119 8 C -0.085 4.085 9 H 0.088 0.912 10 C 0.124 3.876 11 N -0.685 5.685 12 C 0.514 3.486 13 O -0.541 6.541 14 C 0.501 3.499 15 O -0.548 6.548 16 N -0.687 5.687 17 C 0.127 3.873 18 C -0.106 4.106 19 C 0.025 3.975 20 C -0.543 4.543 21 H 0.064 0.936 22 C 0.000 4.000 23 N -0.933 5.933 24 Si 0.964 3.036 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.262 1.262 28 C 0.064 3.936 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.087 0.913 37 H 0.029 0.971 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.419 0.581 45 H 0.419 0.581 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.067 0.933 50 H -0.004 1.004 51 H -0.003 1.003 52 H 0.263 0.737 53 H 0.035 0.965 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.921 9.618 -24.043 38.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.034 4.034 3 C -0.201 4.201 4 N -0.266 5.266 5 C -0.078 4.078 6 C -0.151 4.151 7 C -0.157 4.157 8 C -0.105 4.105 9 H 0.107 0.893 10 C 0.001 3.999 11 N -0.338 5.338 12 C 0.294 3.706 13 O -0.418 6.418 14 C 0.282 3.718 15 O -0.426 6.426 16 N -0.339 5.339 17 C 0.004 3.996 18 C -0.144 4.144 19 C -0.013 4.013 20 C -0.581 4.581 21 H 0.082 0.918 22 C -0.198 4.198 23 N -0.573 5.573 24 Si 0.789 3.211 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.187 1.187 28 C -0.065 4.065 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.257 0.743 45 H 0.257 0.743 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.015 0.985 51 H 0.015 0.985 52 H 0.072 0.928 53 H 0.053 0.947 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -28.044 9.849 -23.491 37.885 hybrid contribution 1.245 -0.782 -0.138 1.477 sum -26.799 9.067 -23.629 36.861 Atomic orbital electron populations 1.21938 0.93630 1.02270 1.02588 1.21653 0.96165 0.95271 0.90265 1.21858 1.01030 0.94853 1.02366 1.61964 1.05207 1.20145 1.39236 1.22233 1.00029 0.88665 0.96883 1.21559 0.95128 1.00943 0.97506 1.21681 0.95955 0.95902 1.02179 1.21311 0.91567 0.98094 0.99491 0.89331 1.21568 0.94501 1.00625 0.83174 1.45730 1.06380 1.65500 1.16217 1.19911 0.84012 0.78980 0.87664 1.90762 1.55275 1.51235 1.44561 1.20349 0.83546 0.79177 0.88770 1.90752 1.55094 1.51629 1.45129 1.45886 1.07205 1.65006 1.15784 1.21479 0.95325 0.99656 0.83141 1.21645 0.91816 1.01723 0.99230 1.18937 0.95089 0.95024 0.92265 1.21684 0.93632 1.44978 0.97837 0.91791 1.25959 1.03690 0.94989 0.95137 1.70093 1.37712 1.46870 1.02619 0.85455 0.79363 0.77918 0.78351 1.19865 1.20932 1.18660 1.21995 0.88117 1.00968 0.95373 0.92148 0.92128 0.91302 0.94568 0.92656 0.91358 0.92294 0.89478 0.95280 0.91309 0.90576 0.91599 0.92042 0.90930 0.90497 0.74347 0.74345 0.91708 0.91714 0.91473 0.91451 0.98515 0.98497 0.92799 0.94668 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.65 71.98 0.62 -0.52 16 2 C 0.07 0.71 2.69 44.92 0.12 0.83 16 3 C -0.14 -1.26 9.10 71.98 0.66 -0.61 16 4 N -0.54 -5.98 4.52 -871.11 -3.94 -9.92 16 5 C 0.05 0.50 5.01 86.32 0.43 0.93 16 6 C -0.11 -1.14 6.09 30.65 0.19 -0.95 16 7 C -0.12 -1.32 5.13 30.67 0.16 -1.16 16 8 C -0.09 -0.95 2.39 -10.75 -0.03 -0.97 16 9 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 10 C 0.12 1.76 5.07 86.38 0.44 2.20 16 11 N -0.69 -12.54 5.30 -464.40 -2.46 -15.00 16 12 C 0.51 12.76 7.89 87.27 0.69 13.45 16 13 O -0.54 -15.42 16.48 -3.25 -0.05 -15.47 16 14 C 0.50 14.49 7.89 87.27 0.69 15.18 16 15 O -0.55 -18.15 16.48 -3.25 -0.05 -18.20 16 16 N -0.69 -20.00 5.55 -464.41 -2.58 -22.57 16 17 C 0.13 4.33 5.67 86.38 0.49 4.82 16 18 C -0.11 -4.08 5.27 30.59 0.16 -3.92 16 19 C 0.02 1.26 4.97 29.85 0.15 1.41 16 20 C -0.54 -30.29 9.11 25.60 0.23 -30.05 16 21 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 22 C 0.00 0.01 5.46 84.66 0.46 0.47 16 23 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 24 Si 0.96 43.83 29.54 68.60 2.03 45.85 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 28 C 0.06 0.69 4.57 86.32 0.39 1.08 16 29 H 0.06 0.44 6.19 -2.39 -0.01 0.42 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.40 16 32 H 0.04 0.37 8.13 -2.39 -0.02 0.35 16 33 H 0.05 0.50 6.40 -2.38 -0.02 0.48 16 34 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.09 0.77 5.83 -2.39 -0.01 0.76 16 37 H 0.03 0.31 8.14 -2.38 -0.02 0.29 16 38 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.07 0.77 7.26 -2.39 -0.02 0.76 16 41 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.42 6.95 7.15 -92.70 -0.66 6.29 16 45 H 0.42 10.96 7.94 -92.71 -0.74 10.22 16 46 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 48 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 49 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 50 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 51 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 52 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 53 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 54 H 0.08 0.87 6.18 -2.39 -0.01 0.85 16 Total: -1.00 -67.16 425.13 -1.44 -68.60 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -0.52 Total: 20.68 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 5.85 Total: 2.18 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -8.69 Total: -103.64 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -0.11 Total: -33.67 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -67.16 -1.44 -68.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356531061.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.362 kcal (2) G-P(sol) polarization free energy of solvation -67.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds