Wall clock time and date at job start Tue Mar 31 2020 23:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46786 * 2 1 4 4 H 1.09000 * 109.47189 * 306.82361 * 3 2 1 5 5 C 1.50698 * 109.47028 * 186.81986 * 3 2 1 6 6 H 1.07997 * 120.00316 * 245.29798 * 5 3 2 7 7 C 1.37885 * 120.00120 * 65.30049 * 5 3 2 8 8 N 1.31505 * 120.00464 * 205.01741 * 7 5 3 9 9 Si 1.86802 * 119.99479 * 25.02124 * 7 5 3 10 10 H 1.48501 * 109.46793 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46923 * 299.99796 * 9 7 5 12 12 H 1.48500 * 109.47361 * 59.99657 * 9 7 5 13 13 N 1.46499 * 109.47158 * 66.82189 * 3 2 1 14 14 C 1.34776 * 120.00443 * 275.00092 * 13 3 2 15 15 O 1.21279 * 119.99514 * 359.97438 * 14 13 3 16 16 C 1.50690 * 120.00392 * 180.02562 * 14 13 3 17 17 C 1.53048 * 109.45893 * 300.06399 * 16 14 13 18 18 C 1.53196 * 109.31126 * 178.61423 * 17 16 14 19 19 N 1.46925 * 108.77402 * 54.63594 * 18 17 16 20 20 C 1.34781 * 120.62814 * 126.36490 * 19 18 17 21 21 O 1.21585 * 120.00289 * 209.62107 * 20 19 18 22 22 N 1.34780 * 119.99702 * 29.62528 * 20 19 18 23 23 C 1.46501 * 119.99757 * 199.40659 * 22 20 19 24 24 C 1.53010 * 109.46866 * 94.65469 * 23 22 20 25 25 C 1.46503 * 120.00347 * 19.41228 * 22 20 19 26 26 C 1.53004 * 109.47169 * 72.34374 * 25 22 20 27 27 C 1.46918 * 118.74312 * 306.39087 * 19 18 17 28 28 C 1.53038 * 109.46155 * 179.97438 * 16 14 13 29 29 H 1.08996 * 109.47479 * 299.99927 * 1 2 3 30 30 H 1.09005 * 109.47103 * 60.00396 * 1 2 3 31 31 H 1.09002 * 109.46767 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47586 * 239.99589 * 2 1 3 33 33 H 1.09005 * 109.47103 * 119.99604 * 2 1 3 34 34 H 0.96998 * 119.99888 * 354.97986 * 8 7 5 35 35 H 0.97001 * 120.00005 * 95.00032 * 13 3 2 36 36 H 1.09002 * 109.46326 * 60.02141 * 16 14 13 37 37 H 1.09000 * 109.49829 * 298.56676 * 17 16 14 38 38 H 1.09000 * 109.49442 * 58.66947 * 17 16 14 39 39 H 1.09002 * 109.58681 * 294.84834 * 18 17 16 40 40 H 1.09003 * 109.69984 * 174.49168 * 18 17 16 41 41 H 1.08995 * 109.47381 * 214.65362 * 23 22 20 42 42 H 1.09000 * 109.47235 * 334.66144 * 23 22 20 43 43 H 1.08993 * 109.47006 * 179.97438 * 24 23 22 44 44 H 1.08995 * 109.47033 * 300.00106 * 24 23 22 45 45 H 1.08996 * 109.46464 * 59.99845 * 24 23 22 46 46 H 1.08992 * 109.47010 * 192.34951 * 25 22 20 47 47 H 1.09004 * 109.46431 * 312.34730 * 25 22 20 48 48 H 1.08998 * 109.46746 * 180.02562 * 26 25 22 49 49 H 1.08993 * 109.46935 * 300.00490 * 26 25 22 50 50 H 1.09002 * 109.46520 * 60.00404 * 26 25 22 51 51 H 1.09003 * 109.58644 * 293.82135 * 27 19 18 52 52 H 1.09000 * 109.70614 * 173.46432 * 27 19 18 53 53 H 1.08996 * 109.49662 * 301.33605 * 28 16 14 54 54 H 1.08998 * 109.49934 * 61.40183 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5803 1.9904 -0.8226 5 6 3.5374 1.4460 -0.1687 6 1 4.1700 1.8041 0.6300 7 6 4.0999 0.9919 -1.3428 8 7 5.3309 0.5291 -1.3464 9 14 3.1135 1.0343 -2.9286 10 1 3.9383 0.4942 -4.0391 11 1 1.8905 0.2063 -2.7730 12 1 2.7272 2.4352 -3.2340 13 7 1.6901 2.0842 1.2697 14 6 0.4769 2.6496 1.4274 15 8 -0.3251 2.6276 0.5179 16 6 0.1173 3.3100 2.7333 17 6 0.1971 2.2815 3.8638 18 6 -0.1353 2.9643 5.1943 19 7 -1.4409 3.6269 5.0725 20 6 -2.4238 3.3759 5.9599 21 8 -3.5875 3.4530 5.6161 22 7 -2.1167 3.0395 7.2284 23 6 -3.1095 2.3646 8.0680 24 6 -2.8962 0.8513 7.9937 25 6 -0.7901 3.3488 7.7676 26 6 -0.6758 4.8556 8.0079 27 6 -1.6550 4.5680 3.9647 28 6 -1.3052 3.8679 2.6478 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.8682 0.5741 -0.5401 35 1 2.3317 2.1021 1.9970 36 1 0.8147 4.1236 2.9329 37 1 -0.5177 1.4800 3.6776 38 1 1.2046 1.8680 3.9089 39 1 0.6302 3.7048 5.4262 40 1 -0.1761 2.2196 5.9893 41 1 -2.9986 2.6969 9.1002 42 1 -4.1111 2.6081 7.7135 43 1 -3.6345 0.3492 8.6187 44 1 -3.0071 0.5190 6.9616 45 1 -1.8947 0.6078 8.3482 46 1 -0.6481 2.8188 8.7093 47 1 -0.0265 3.0355 7.0556 48 1 0.3113 5.0857 8.4086 49 1 -0.8179 5.3854 7.0661 50 1 -1.4395 5.1688 8.7199 51 1 -1.0135 5.4394 4.0964 52 1 -2.6986 4.8821 3.9457 53 1 -1.3669 4.5831 1.8276 54 1 -2.0061 3.0518 2.4723 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358075868.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:53 Heat of formation + Delta-G solvation = -77.375960 kcal Electronic energy + Delta-G solvation = -31685.929652 eV Core-core repulsion = 27657.330782 eV Total energy + Delta-G solvation = -4028.598870 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.88910 -40.88301 -38.45890 -37.28752 -36.97042 -34.54281 -34.26522 -33.18843 -32.53247 -31.97761 -30.25623 -29.16517 -26.97576 -24.99198 -24.48639 -24.01750 -23.85519 -22.56781 -21.55022 -21.04771 -20.33046 -19.67089 -18.19955 -17.83422 -17.62977 -17.20150 -16.89350 -16.41430 -15.83435 -15.65493 -15.48486 -15.08949 -15.04292 -14.81216 -14.78229 -14.58318 -14.40916 -14.34301 -14.13143 -13.78488 -13.62578 -13.55217 -13.40574 -13.34028 -12.94393 -12.76729 -12.67565 -12.55601 -12.45617 -12.28162 -12.26365 -12.01305 -11.84279 -11.79314 -11.71703 -11.58123 -11.50447 -11.23931 -11.03840 -10.54196 -10.33776 -9.80661 -9.73854 -9.36485 -8.80417 -6.39141 1.45529 1.48415 1.61515 1.68717 1.83570 1.88025 2.40264 2.52263 2.78925 2.97488 3.63457 3.69513 3.83713 3.98567 4.07028 4.15652 4.24728 4.27823 4.30511 4.31934 4.39311 4.40875 4.47023 4.49994 4.53957 4.57186 4.64258 4.73379 4.74835 4.80315 4.84430 4.87507 4.90189 4.97837 5.01619 5.05669 5.07648 5.12963 5.22459 5.28560 5.29316 5.32017 5.36368 5.54513 5.54940 5.73433 5.73723 5.80861 5.94090 6.04479 6.58447 6.86448 6.93392 7.30556 7.45885 7.53717 8.58876 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019890 B = 0.002590 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.409346 B =10808.215178 C =10931.881943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.126 4.126 3 C 0.255 3.745 4 H 0.016 0.984 5 C -0.621 4.621 6 H 0.045 0.955 7 C 0.003 3.997 8 N -0.919 5.919 9 Si 1.066 2.934 10 H -0.281 1.281 11 H -0.259 1.259 12 H -0.274 1.274 13 N -0.700 5.700 14 C 0.502 3.498 15 O -0.586 6.586 16 C -0.094 4.094 17 C -0.121 4.121 18 C 0.114 3.886 19 N -0.637 5.637 20 C 0.712 3.288 21 O -0.632 6.632 22 N -0.628 5.628 23 C 0.121 3.879 24 C -0.163 4.163 25 C 0.074 3.926 26 C -0.164 4.164 27 C 0.141 3.859 28 C -0.103 4.103 29 H 0.049 0.951 30 H 0.035 0.965 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.261 0.739 35 H 0.403 0.597 36 H 0.123 0.877 37 H 0.049 0.951 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.059 0.941 43 H 0.079 0.921 44 H 0.029 0.971 45 H 0.071 0.929 46 H 0.103 0.897 47 H 0.107 0.893 48 H 0.086 0.914 49 H 0.042 0.958 50 H 0.048 0.952 51 H 0.093 0.907 52 H 0.071 0.929 53 H 0.074 0.926 54 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.386 6.075 24.181 27.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.165 4.165 3 C 0.150 3.850 4 H 0.034 0.966 5 C -0.658 4.658 6 H 0.063 0.937 7 C -0.199 4.199 8 N -0.553 5.553 9 Si 0.889 3.111 10 H -0.207 1.207 11 H -0.183 1.183 12 H -0.200 1.200 13 N -0.349 5.349 14 C 0.289 3.711 15 O -0.467 6.467 16 C -0.116 4.116 17 C -0.159 4.159 18 C -0.007 4.007 19 N -0.375 5.375 20 C 0.416 3.584 21 O -0.512 6.512 22 N -0.365 5.365 23 C -0.002 4.002 24 C -0.221 4.221 25 C -0.046 4.046 26 C -0.222 4.222 27 C 0.018 3.982 28 C -0.143 4.143 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.238 0.762 36 H 0.141 0.859 37 H 0.068 0.932 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.128 0.872 41 H 0.119 0.881 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.049 0.951 45 H 0.090 0.910 46 H 0.121 0.879 47 H 0.125 0.875 48 H 0.105 0.895 49 H 0.061 0.939 50 H 0.067 0.933 51 H 0.111 0.889 52 H 0.089 0.911 53 H 0.093 0.907 54 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.500 5.665 21.783 25.275 hybrid contribution 0.431 0.302 1.371 1.468 sum -11.069 5.967 23.153 26.348 Atomic orbital electron populations 1.21757 0.95956 1.00008 1.01228 1.22112 0.94796 0.98691 1.00923 1.18652 0.93585 0.89388 0.83368 0.96626 1.22164 0.91486 1.49054 1.03120 0.93696 1.26598 0.97795 0.91283 1.04260 1.70990 1.12134 1.39017 1.33196 0.83701 0.75501 0.78224 0.73636 1.20699 1.18340 1.19970 1.46081 1.15390 1.56523 1.16921 1.21232 0.81388 0.78156 0.90301 1.90648 1.50535 1.60830 1.44692 1.21295 0.99182 0.99670 0.91424 1.21934 1.03287 0.96995 0.93720 1.22209 0.84200 0.97666 0.96640 1.47166 1.14124 1.48230 1.27973 1.16125 0.83962 0.76781 0.81582 1.90848 1.20896 1.59521 1.79965 1.47404 1.16699 1.62683 1.09718 1.21439 0.91700 0.92083 0.94989 1.22144 1.03312 0.95509 1.01140 1.22477 0.83562 0.96796 1.01803 1.22129 1.02893 0.95824 1.01380 1.21425 1.02152 0.90938 0.83729 1.21589 0.94641 1.00334 0.97688 0.93227 0.94618 0.92934 0.93346 0.92618 0.92922 0.76165 0.85896 0.93229 0.88319 0.87902 0.87235 0.88079 0.92225 0.90236 0.95139 0.90979 0.87853 0.87541 0.89522 0.93899 0.93298 0.88907 0.91079 0.90727 0.93883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.28 8.55 71.98 0.62 -4.67 16 2 C -0.13 -5.51 5.34 30.59 0.16 -5.34 16 3 C 0.26 11.79 1.82 44.25 0.08 11.87 16 4 H 0.02 0.82 6.15 -2.39 -0.01 0.80 16 5 C -0.62 -32.71 8.93 25.60 0.23 -32.48 16 6 H 0.04 2.46 7.96 -2.91 -0.02 2.44 16 7 C 0.00 0.18 5.16 84.66 0.44 0.62 16 8 N -0.92 -54.20 13.69 21.45 0.29 -53.90 16 9 Si 1.07 50.41 26.50 68.60 1.82 52.23 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.26 -11.53 6.26 99.48 0.62 -10.91 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 13 N -0.70 -25.88 4.92 -446.11 -2.20 -28.08 16 14 C 0.50 17.40 5.81 87.65 0.51 17.91 16 15 O -0.59 -25.15 13.13 -3.03 -0.04 -25.19 16 16 C -0.09 -2.21 2.49 -11.51 -0.03 -2.23 16 17 C -0.12 -2.24 5.27 30.68 0.16 -2.08 16 18 C 0.11 1.50 4.38 86.36 0.38 1.88 16 19 N -0.64 -12.40 2.76 -836.90 -2.31 -14.71 16 20 C 0.71 17.06 7.17 179.05 1.28 18.35 16 21 O -0.63 -21.40 15.70 -3.98 -0.06 -21.46 16 22 N -0.63 -10.20 2.38 -839.80 -2.00 -12.20 16 23 C 0.12 1.75 6.23 86.38 0.54 2.29 16 24 C -0.16 -2.06 10.24 71.99 0.74 -1.32 16 25 C 0.07 0.64 5.62 86.38 0.49 1.12 16 26 C -0.16 -1.47 10.04 71.98 0.72 -0.75 16 27 C 0.14 2.88 6.41 86.36 0.55 3.44 16 28 C -0.10 -2.60 4.65 30.67 0.14 -2.46 16 29 H 0.05 1.97 5.60 -2.39 -0.01 1.95 16 30 H 0.03 1.51 7.95 -2.38 -0.02 1.49 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 2.24 5.62 -2.39 -0.01 2.22 16 33 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 34 H 0.26 15.30 8.73 -92.71 -0.81 14.49 16 35 H 0.40 12.77 7.92 -92.71 -0.73 12.04 16 36 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.10 1.54 7.52 -2.39 -0.02 1.53 16 39 H 0.10 0.78 7.86 -2.39 -0.02 0.76 16 40 H 0.11 1.15 5.46 -2.39 -0.01 1.14 16 41 H 0.10 0.89 8.11 -2.39 -0.02 0.88 16 42 H 0.06 1.21 7.18 -2.39 -0.02 1.19 16 43 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.10 0.45 7.95 -2.39 -0.02 0.43 16 47 H 0.11 0.70 3.39 -2.38 -0.01 0.69 16 48 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 49 H 0.04 0.53 7.87 -2.39 -0.02 0.51 16 50 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 51 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 52 H 0.07 1.74 7.29 -2.39 -0.02 1.73 16 53 H 0.07 1.97 8.07 -2.39 -0.02 1.95 16 54 H 0.04 1.35 8.13 -2.39 -0.02 1.33 16 Total: -1.00 -75.62 407.85 2.54 -73.08 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.03 Total: 24.08 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 7.01 Total: 6.15 kcal Atomic # 7 Polarization: -102.68 SS G_CDS: -6.21 Total: -108.89 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -0.10 Total: -46.65 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 1.82 Total: 52.23 kcal Total: -75.62 2.54 -73.08 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358075868.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.294 kcal (2) G-P(sol) polarization free energy of solvation -75.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds