Wall clock time and date at job start Tue Mar 31 2020 22:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46851 * 2 1 4 4 H 1.08995 * 109.47686 * 54.10898 * 3 2 1 5 5 C 1.53002 * 109.46975 * 174.11314 * 3 2 1 6 6 C 1.53007 * 109.47118 * 294.10765 * 3 2 1 7 7 H 1.08993 * 109.46836 * 53.61487 * 6 3 2 8 8 N 1.46505 * 109.46995 * 293.61432 * 6 3 2 9 9 C 1.34774 * 119.99783 * 84.99985 * 8 6 3 10 10 O 1.21579 * 120.00444 * 0.02562 * 9 8 6 11 11 N 1.34778 * 119.99676 * 179.97438 * 9 8 6 12 12 C 1.47027 * 125.64737 * 359.69251 * 11 9 8 13 13 C 1.54316 * 107.27216 * 180.96754 * 12 11 9 14 14 C 1.55154 * 102.86463 * 22.52840 * 13 12 11 15 15 C 1.47421 * 125.64971 * 180.02562 * 11 9 8 16 16 C 1.50700 * 109.46952 * 173.61294 * 6 3 2 17 17 O 1.21285 * 120.00016 * 98.60053 * 16 6 3 18 18 N 1.34776 * 120.00071 * 278.60003 * 16 6 3 19 19 C 1.46500 * 120.00070 * 184.14114 * 18 16 6 20 20 H 1.09000 * 109.47083 * 34.99882 * 19 18 16 21 21 C 1.50691 * 109.47205 * 155.00252 * 19 18 16 22 22 H 1.07997 * 120.00050 * 359.97438 * 21 19 18 23 23 C 1.37875 * 120.00168 * 180.02562 * 21 19 18 24 24 N 1.31517 * 119.99988 * 359.97438 * 23 21 19 25 25 Si 1.86804 * 120.00102 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46873 * 90.00061 * 25 23 21 27 27 H 1.48507 * 109.47063 * 209.99647 * 25 23 21 28 28 H 1.48496 * 109.47190 * 329.99881 * 25 23 21 29 29 C 1.52998 * 109.47050 * 275.00269 * 19 18 16 30 30 C 1.52995 * 109.47433 * 64.99876 * 29 19 18 31 31 H 1.08997 * 109.46970 * 60.65522 * 1 2 3 32 32 H 1.09003 * 109.46662 * 180.64878 * 1 2 3 33 33 H 1.08998 * 109.47086 * 300.65087 * 1 2 3 34 34 H 1.09001 * 109.47103 * 240.00223 * 2 1 3 35 35 H 1.09003 * 109.47153 * 120.00252 * 2 1 3 36 36 H 1.09001 * 109.47318 * 180.02562 * 5 3 2 37 37 H 1.09003 * 109.46950 * 299.99701 * 5 3 2 38 38 H 1.08995 * 109.47253 * 59.99319 * 5 3 2 39 39 H 0.96996 * 119.99604 * 264.99695 * 8 6 3 40 40 H 1.09001 * 109.88356 * 300.51026 * 12 11 9 41 41 H 1.08995 * 109.88070 * 61.68214 * 12 11 9 42 42 H 1.08998 * 110.92513 * 264.10767 * 13 12 11 43 43 H 1.09002 * 110.58950 * 140.78990 * 13 12 11 44 44 H 1.09004 * 111.00557 * 206.22652 * 14 13 12 45 45 H 1.09003 * 111.00265 * 82.37846 * 14 13 12 46 46 H 1.09002 * 110.36900 * 274.67590 * 15 11 9 47 47 H 1.09003 * 110.36389 * 36.88414 * 15 11 9 48 48 H 0.97005 * 119.99911 * 4.14355 * 18 16 6 49 49 H 0.96997 * 119.99946 * 179.97438 * 24 23 21 50 50 H 1.08997 * 109.47053 * 184.99797 * 29 19 18 51 51 H 1.08999 * 109.47068 * 304.99618 * 29 19 18 52 52 H 1.09001 * 109.47419 * 179.97438 * 30 29 19 53 53 H 1.09005 * 109.47165 * 300.00074 * 30 29 19 54 54 H 1.08999 * 109.47204 * 59.99825 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5931 1.9859 0.8325 5 6 3.5628 1.4451 0.1480 6 6 1.6545 2.1198 -1.3167 7 1 0.5812 2.0180 -1.4769 8 7 2.3757 1.4841 -2.4223 9 6 1.8799 0.3715 -2.9989 10 8 0.8340 -0.1046 -2.6021 11 7 2.5432 -0.2130 -4.0163 12 6 3.8085 0.2590 -4.5976 13 6 4.1730 -0.7054 -5.7459 14 6 2.8031 -1.3305 -6.1201 15 6 2.1166 -1.4273 -4.7351 16 6 2.0168 3.5812 -1.2548 17 8 3.0466 3.9727 -1.7620 18 7 1.1965 4.4533 -0.6359 19 6 1.5024 5.8859 -0.6539 20 1 1.9603 6.1477 -1.6078 21 6 0.2302 6.6734 -0.4744 22 1 -0.7120 6.1584 -0.3589 23 6 0.2690 8.0515 -0.4587 24 7 1.4163 8.6788 -0.5998 25 14 -1.3081 9.0278 -0.2369 26 1 -1.5438 9.2655 1.2099 27 1 -1.1867 10.3307 -0.9392 28 1 -2.4475 8.2635 -0.8050 29 6 2.4707 6.2149 0.4840 30 6 3.8071 5.5126 0.2357 31 1 -0.3633 0.5036 -0.8958 32 1 -0.3633 -1.0277 0.0116 33 1 -0.3633 0.5239 0.8841 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.9262 2.4728 0.1484 37 1 3.8375 0.9626 1.0860 38 1 4.0097 0.9017 -0.6845 39 1 3.2099 1.8642 -2.7391 40 1 3.6839 1.2700 -4.9856 41 1 4.5925 0.2441 -3.8407 42 1 4.8668 -1.4733 -5.4039 43 1 4.5898 -0.1561 -6.5901 44 1 2.9322 -2.3184 -6.5623 45 1 2.2441 -0.6751 -6.7880 46 1 2.4535 -2.3191 -4.2064 47 1 1.0324 -1.4406 -4.8472 48 1 0.4036 4.1323 -0.1785 49 1 1.4435 9.6483 -0.5891 50 1 2.6290 7.2925 0.5262 51 1 2.0503 5.8722 1.4294 52 1 4.4971 5.7474 1.0461 53 1 3.6488 4.4349 0.1934 54 1 4.2275 5.8554 -0.7098 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358084491.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:08 Heat of formation + Delta-G solvation = -95.478394 kcal Electronic energy + Delta-G solvation = -32180.767006 eV Core-core repulsion = 28151.383155 eV Total energy + Delta-G solvation = -4029.383850 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.91673 -40.62033 -38.80606 -37.35356 -36.74008 -34.70379 -34.26735 -32.88051 -32.25563 -31.06285 -29.89386 -29.23543 -27.83699 -25.06971 -24.75679 -24.11881 -22.34264 -22.06335 -21.46591 -21.00035 -20.43868 -19.65549 -18.57145 -17.71228 -17.56966 -17.24187 -16.86999 -16.65546 -16.24872 -15.98449 -15.37699 -15.09902 -14.95276 -14.59122 -14.46857 -14.33567 -14.20856 -14.06727 -13.85847 -13.67695 -13.56391 -13.33079 -13.22874 -13.14521 -12.91033 -12.79498 -12.65996 -12.26324 -12.19149 -12.15945 -12.11683 -12.03082 -11.80496 -11.75303 -11.59854 -11.57361 -11.44465 -11.12748 -11.04190 -10.64903 -10.51390 -10.04761 -9.64204 -9.49045 -8.16252 -6.32887 1.43399 1.44368 1.47153 1.55296 1.78447 2.14684 2.35473 2.58408 3.02614 3.13297 3.70062 3.71011 3.81096 3.81331 3.92922 4.08314 4.15259 4.32631 4.40208 4.50624 4.53163 4.58402 4.60935 4.62526 4.66437 4.77095 4.83585 4.85669 4.88394 4.94300 4.99153 5.01420 5.07259 5.12161 5.13808 5.21994 5.24451 5.27922 5.37312 5.37942 5.42216 5.50450 5.52870 5.57428 5.61431 5.63586 5.81875 5.91922 6.05073 6.18708 6.74462 6.91269 6.95826 7.32205 7.49996 7.56344 8.88684 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013730 B = 0.003041 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.824835 B = 9205.327650 C = 9508.864451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 C -0.092 4.092 4 H 0.086 0.914 5 C -0.139 4.139 6 C 0.159 3.841 7 H 0.102 0.898 8 N -0.719 5.719 9 C 0.717 3.283 10 O -0.605 6.605 11 N -0.640 5.640 12 C 0.089 3.911 13 C -0.120 4.120 14 C -0.125 4.125 15 C 0.120 3.880 16 C 0.503 3.497 17 O -0.569 6.569 18 N -0.700 5.700 19 C 0.283 3.717 20 H 0.001 0.999 21 C -0.549 4.549 22 H 0.069 0.931 23 C 0.018 3.982 24 N -0.912 5.912 25 Si 0.966 3.034 26 H -0.272 1.272 27 H -0.286 1.286 28 H -0.267 1.267 29 C -0.120 4.120 30 C -0.125 4.125 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.405 0.595 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.062 0.938 48 H 0.402 0.598 49 H 0.265 0.735 50 H 0.070 0.930 51 H 0.039 0.961 52 H 0.040 0.960 53 H 0.054 0.946 54 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.705 -21.283 -5.475 22.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.139 4.139 3 C -0.112 4.112 4 H 0.104 0.896 5 C -0.197 4.197 6 C 0.050 3.950 7 H 0.120 0.880 8 N -0.375 5.375 9 C 0.419 3.581 10 O -0.485 6.485 11 N -0.379 5.379 12 C -0.034 4.034 13 C -0.158 4.158 14 C -0.163 4.163 15 C -0.003 4.003 16 C 0.289 3.711 17 O -0.449 6.449 18 N -0.349 5.349 19 C 0.180 3.820 20 H 0.018 0.982 21 C -0.587 4.587 22 H 0.087 0.913 23 C -0.182 4.182 24 N -0.551 5.551 25 Si 0.791 3.209 26 H -0.197 1.197 27 H -0.212 1.212 28 H -0.192 1.192 29 C -0.159 4.159 30 C -0.182 4.182 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.242 0.758 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.127 0.873 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.080 0.920 48 H 0.236 0.764 49 H 0.074 0.926 50 H 0.088 0.912 51 H 0.058 0.942 52 H 0.059 0.941 53 H 0.073 0.927 54 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 4.702 -21.095 -5.508 22.304 hybrid contribution -0.636 1.229 0.113 1.389 sum 4.066 -19.866 -5.395 20.983 Atomic orbital electron populations 1.21686 0.95570 1.01197 1.01131 1.21480 0.96445 0.94344 1.01665 1.21517 0.97415 0.97478 0.94761 0.89615 1.21755 0.94333 1.01422 1.02140 1.20672 0.98101 0.87914 0.88329 0.88032 1.44744 1.27934 1.28012 1.36833 1.15463 0.82995 0.80250 0.79347 1.90895 1.24438 1.66705 1.66458 1.47689 1.25501 1.29993 1.34689 1.22213 0.85165 0.98955 0.97041 1.22607 0.97608 0.98504 0.97055 1.22792 0.95618 1.03204 0.94713 1.22215 0.99770 0.85936 0.92372 1.20767 0.83748 0.88252 0.78362 1.90638 1.25816 1.80085 1.48387 1.46239 1.26687 1.08193 1.53778 1.18364 0.94144 0.75611 0.93887 0.98161 1.21579 0.93708 0.91999 1.51447 0.91302 1.25701 0.99491 0.98659 0.94348 1.70037 1.26365 1.09023 1.49636 0.85438 0.79420 0.77667 0.78377 1.19712 1.21229 1.19154 1.21768 0.94635 1.01682 0.97826 1.21750 0.97158 1.00336 0.98927 0.92947 0.93487 0.92773 0.92367 0.91581 0.93841 0.91110 0.92712 0.75840 0.92294 0.91185 0.89040 0.88564 0.87305 0.90988 0.91063 0.91962 0.76368 0.92622 0.91205 0.94228 0.94092 0.92732 0.95480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 8.85 71.98 0.64 -2.89 16 2 C -0.10 -2.54 4.86 30.60 0.15 -2.39 16 3 C -0.09 -2.40 2.18 -10.79 -0.02 -2.43 16 4 H 0.09 2.19 8.14 -2.39 -0.02 2.18 16 5 C -0.14 -3.55 8.79 71.98 0.63 -2.92 16 6 C 0.16 4.87 2.26 44.25 0.10 4.97 16 7 H 0.10 3.24 5.88 -2.39 -0.01 3.23 16 8 N -0.72 -20.70 3.93 -461.41 -1.81 -22.51 16 9 C 0.72 20.54 7.11 179.05 1.27 21.81 16 10 O -0.60 -19.92 11.72 -3.96 -0.05 -19.96 16 11 N -0.64 -14.28 3.33 -829.83 -2.76 -17.04 16 12 C 0.09 1.50 6.14 86.73 0.53 2.03 16 13 C -0.12 -1.22 6.95 31.78 0.22 -0.99 16 14 C -0.13 -1.35 7.08 31.98 0.23 -1.13 16 15 C 0.12 2.08 6.91 86.85 0.60 2.68 16 16 C 0.50 18.93 4.99 87.66 0.44 19.36 16 17 O -0.57 -24.39 12.44 -3.05 -0.04 -24.43 16 18 N -0.70 -28.24 5.02 -446.11 -2.24 -30.47 16 19 C 0.28 14.14 2.24 44.24 0.10 14.24 16 20 H 0.00 0.03 7.64 -2.39 -0.02 0.01 16 21 C -0.55 -28.76 8.73 25.60 0.22 -28.54 16 22 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 23 C 0.02 0.98 5.29 84.65 0.45 1.43 16 24 N -0.91 -51.52 11.29 21.45 0.24 -51.27 16 25 Si 0.97 42.03 29.54 68.60 2.03 44.06 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 27 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 29 C -0.12 -5.77 5.45 30.59 0.17 -5.60 16 30 C -0.12 -5.38 8.47 71.98 0.61 -4.78 16 31 H 0.05 1.54 4.97 -2.39 -0.01 1.53 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.06 1.64 5.08 -2.39 -0.01 1.63 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.04 1.30 5.65 -2.39 -0.01 1.28 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.05 1.36 7.44 -2.39 -0.02 1.34 16 39 H 0.40 11.65 6.73 -92.71 -0.62 11.03 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 45 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 46 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.06 1.28 8.03 -2.39 -0.02 1.26 16 48 H 0.40 14.23 8.54 -92.70 -0.79 13.44 16 49 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 50 H 0.07 3.79 5.95 -2.39 -0.01 3.77 16 51 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 52 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 53 H 0.05 2.23 4.02 -2.38 -0.01 2.22 16 54 H 0.03 1.25 7.80 -2.39 -0.02 1.24 16 Total: -1.00 -65.18 402.69 1.19 -63.99 By element: Atomic # 1 Polarization: 43.29 SS G_CDS: -0.51 Total: 42.79 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 6.33 Total: 14.86 kcal Atomic # 7 Polarization: -114.73 SS G_CDS: -6.57 Total: -121.30 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -0.08 Total: -44.39 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -65.18 1.19 -63.99 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358084491.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.488 kcal (2) G-P(sol) polarization free energy of solvation -65.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds