Wall clock time and date at job start Tue Mar 31 2020 22:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47140 * 2 1 4 4 H 1.08997 * 109.47066 * 305.75059 * 3 2 1 5 5 C 1.53003 * 109.46901 * 185.75400 * 3 2 1 6 6 C 1.52997 * 109.46805 * 65.75685 * 3 2 1 7 7 H 1.08994 * 109.47382 * 298.23874 * 6 3 2 8 8 N 1.46510 * 109.46661 * 178.24547 * 6 3 2 9 9 C 1.34771 * 119.99976 * 88.34831 * 8 6 3 10 10 O 1.21592 * 120.00306 * 5.03944 * 9 8 6 11 11 N 1.34781 * 120.00243 * 185.04001 * 9 8 6 12 12 C 1.47021 * 125.64389 * 359.68854 * 11 9 8 13 13 C 1.54316 * 107.27477 * 180.96742 * 12 11 9 14 14 C 1.55161 * 102.86239 * 22.53264 * 13 12 11 15 15 C 1.47426 * 125.65077 * 180.02562 * 11 9 8 16 16 C 1.50700 * 109.47679 * 58.24881 * 6 3 2 17 17 O 1.21273 * 120.00550 * 105.43902 * 16 6 3 18 18 N 1.34773 * 119.99571 * 285.44283 * 16 6 3 19 19 C 1.46497 * 120.00421 * 180.50874 * 18 16 6 20 20 H 1.09001 * 109.46770 * 32.84631 * 19 18 16 21 21 C 1.50692 * 109.47847 * 152.84805 * 19 18 16 22 22 H 1.08007 * 119.99637 * 0.02562 * 21 19 18 23 23 C 1.37873 * 120.00665 * 180.02562 * 21 19 18 24 24 N 1.31516 * 119.99736 * 359.97438 * 23 21 19 25 25 Si 1.86800 * 120.00479 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46878 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46863 * 119.99795 * 25 23 21 28 28 H 1.48494 * 109.47446 * 239.99683 * 25 23 21 29 29 C 1.53003 * 109.47130 * 272.85699 * 19 18 16 30 30 C 1.52993 * 109.47582 * 66.09036 * 29 19 18 31 31 H 1.09001 * 109.47627 * 184.31378 * 1 2 3 32 32 H 1.08996 * 109.47433 * 304.32174 * 1 2 3 33 33 H 1.09006 * 109.46566 * 64.32284 * 1 2 3 34 34 H 1.09008 * 109.47166 * 239.99850 * 2 1 3 35 35 H 1.09002 * 109.46967 * 120.00460 * 2 1 3 36 36 H 1.09004 * 109.47130 * 307.15867 * 5 3 2 37 37 H 1.08997 * 109.47146 * 67.15198 * 5 3 2 38 38 H 1.08999 * 109.46815 * 187.15610 * 5 3 2 39 39 H 0.96999 * 119.99827 * 268.34540 * 8 6 3 40 40 H 1.08996 * 109.88677 * 300.51879 * 12 11 9 41 41 H 1.09005 * 109.87812 * 61.68172 * 12 11 9 42 42 H 1.08999 * 110.92893 * 264.11648 * 13 12 11 43 43 H 1.09002 * 110.58657 * 140.78790 * 13 12 11 44 44 H 1.09001 * 111.00145 * 206.22582 * 14 13 12 45 45 H 1.09003 * 111.00373 * 82.37012 * 14 13 12 46 46 H 1.08997 * 110.36352 * 274.66935 * 15 11 9 47 47 H 1.08996 * 110.36384 * 36.88359 * 15 11 9 48 48 H 0.97009 * 120.00258 * 0.50762 * 18 16 6 49 49 H 0.97001 * 120.00084 * 180.02562 * 24 23 21 50 50 H 1.09002 * 109.46738 * 306.09037 * 29 19 18 51 51 H 1.09000 * 109.46834 * 186.09597 * 29 19 18 52 52 H 1.08999 * 109.47100 * 294.72882 * 30 29 19 53 53 H 1.08995 * 109.47248 * 174.72931 * 30 29 19 54 54 H 1.08997 * 109.46796 * 54.72906 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5950 1.9852 -0.8340 5 6 3.5632 1.4449 -0.1446 6 6 1.6515 2.1207 1.3153 7 1 0.5655 2.1469 1.4037 8 7 2.1760 3.4886 1.3328 9 6 1.4439 4.4976 0.8207 10 8 0.3122 4.2891 0.4278 11 7 1.9661 5.7377 0.7439 12 6 3.3125 6.1293 1.1861 13 6 3.4581 7.6433 0.9256 14 6 1.9854 8.1299 0.8840 15 6 1.2794 6.9276 0.2092 16 6 2.2311 1.3457 2.4705 17 8 3.1906 1.7801 3.0717 18 7 1.6832 0.1698 2.8355 19 6 2.2395 -0.5783 3.9655 20 1 2.6279 0.1196 4.7073 21 6 1.1592 -1.4241 4.5889 22 1 0.1583 -1.4065 4.1835 23 6 1.4485 -2.2203 5.6767 24 7 2.6674 -2.2422 6.1700 25 14 0.1095 -3.2692 6.4489 26 1 -1.1638 -3.0679 5.7118 27 1 0.5001 -4.7003 6.3796 28 1 -0.0719 -2.8740 7.8687 29 6 3.3724 -1.4804 3.4718 30 6 4.5342 -0.6162 2.9779 31 1 -0.3634 -1.0247 0.0773 32 1 -0.3634 0.5794 0.8487 33 1 -0.3633 0.4453 -0.9263 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 4.0013 0.7976 0.6152 37 1 3.8347 1.0783 -1.1345 38 1 3.9386 2.4602 -0.0175 39 1 3.0501 3.6680 1.7131 40 1 3.4285 5.9213 2.2497 41 1 4.0635 5.5830 0.6153 42 1 3.9525 7.8285 -0.0281 43 1 3.9996 8.1222 1.7414 44 1 1.8885 9.0306 0.2779 45 1 1.5998 8.2945 1.8902 46 1 1.3960 6.9784 -0.8733 47 1 0.2227 6.9075 0.4758 48 1 0.9203 -0.1814 2.3499 49 1 2.8711 -2.8026 6.9350 50 1 3.0103 -2.1039 2.6544 51 1 3.7138 -2.1154 4.2894 52 1 4.2190 -0.0502 2.1012 53 1 5.3763 -1.2558 2.7138 54 1 4.8350 0.0734 3.7666 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358084494.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:20 Heat of formation + Delta-G solvation = -95.619363 kcal Electronic energy + Delta-G solvation = -32250.277472 eV Core-core repulsion = 28220.887508 eV Total energy + Delta-G solvation = -4029.389963 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.94489 -40.77586 -38.62418 -37.49977 -37.01274 -34.99639 -34.12536 -32.80574 -32.48944 -30.96585 -29.92928 -29.20256 -27.84411 -25.10811 -24.79891 -24.04939 -22.69637 -22.05883 -21.51953 -21.14444 -20.47672 -19.64021 -18.51610 -17.74981 -17.50470 -17.21605 -16.91573 -16.89512 -16.19950 -15.72539 -15.46740 -15.15050 -14.91120 -14.76703 -14.60332 -14.47469 -14.24447 -14.14407 -13.92728 -13.73190 -13.56161 -13.35587 -13.28631 -13.16113 -12.90053 -12.83484 -12.69037 -12.51981 -12.20377 -12.14110 -12.13262 -11.98657 -11.93356 -11.77061 -11.63690 -11.58935 -11.43488 -11.37617 -11.02670 -10.73470 -10.51869 -10.19782 -9.60452 -9.55248 -8.15907 -6.32476 1.41448 1.42672 1.45727 1.56057 1.73618 2.02743 2.35139 2.57222 2.95367 3.13482 3.67033 3.68230 3.74885 3.78111 3.93390 4.01428 4.07418 4.27460 4.30835 4.46284 4.48045 4.49087 4.56928 4.62996 4.66508 4.74256 4.77251 4.80100 4.86127 4.92796 4.93418 4.99431 5.01907 5.10404 5.12220 5.19094 5.22455 5.25056 5.28286 5.34097 5.37865 5.39169 5.44696 5.55124 5.58148 5.62565 5.81981 5.92290 5.98107 6.19558 6.74661 6.85047 6.90630 7.31651 7.44144 7.48568 8.88948 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014722 B = 0.003053 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.464239 B = 9169.665853 C = 9413.728799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.138 4.138 3 C -0.084 4.084 4 H 0.085 0.915 5 C -0.146 4.146 6 C 0.153 3.847 7 H 0.100 0.900 8 N -0.718 5.718 9 C 0.719 3.281 10 O -0.628 6.628 11 N -0.638 5.638 12 C 0.087 3.913 13 C -0.119 4.119 14 C -0.125 4.125 15 C 0.116 3.884 16 C 0.507 3.493 17 O -0.573 6.573 18 N -0.698 5.698 19 C 0.279 3.721 20 H 0.002 0.998 21 C -0.548 4.548 22 H 0.066 0.934 23 C 0.020 3.980 24 N -0.911 5.911 25 Si 0.964 3.036 26 H -0.264 1.264 27 H -0.277 1.277 28 H -0.285 1.285 29 C -0.118 4.118 30 C -0.128 4.128 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.408 0.592 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.060 0.940 48 H 0.402 0.598 49 H 0.265 0.735 50 H 0.041 0.959 51 H 0.071 0.929 52 H 0.053 0.947 53 H 0.044 0.956 54 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.607 15.693 -15.232 21.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.177 4.177 3 C -0.104 4.104 4 H 0.103 0.897 5 C -0.203 4.203 6 C 0.043 3.957 7 H 0.118 0.882 8 N -0.374 5.374 9 C 0.421 3.579 10 O -0.510 6.510 11 N -0.376 5.376 12 C -0.035 4.035 13 C -0.157 4.157 14 C -0.163 4.163 15 C -0.006 4.006 16 C 0.292 3.708 17 O -0.453 6.453 18 N -0.349 5.349 19 C 0.176 3.824 20 H 0.020 0.980 21 C -0.586 4.586 22 H 0.084 0.916 23 C -0.181 4.181 24 N -0.549 5.549 25 Si 0.790 3.210 26 H -0.188 1.188 27 H -0.203 1.203 28 H -0.211 1.211 29 C -0.158 4.158 30 C -0.185 4.185 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.245 0.755 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.111 0.889 43 H 0.117 0.883 44 H 0.129 0.871 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.078 0.922 48 H 0.239 0.761 49 H 0.074 0.926 50 H 0.060 0.940 51 H 0.089 0.911 52 H 0.072 0.928 53 H 0.063 0.937 54 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.554 15.677 -14.924 21.700 hybrid contribution -0.504 -0.855 0.995 1.405 sum 1.050 14.822 -13.930 20.367 Atomic orbital electron populations 1.21862 0.95068 1.02434 1.02042 1.21929 0.96779 0.94992 1.03950 1.21401 0.97410 0.96684 0.94895 0.89707 1.21885 0.94102 1.01890 1.02460 1.20752 0.99614 0.81259 0.94090 0.88193 1.44725 1.22403 1.05432 1.64830 1.15510 0.83521 0.80135 0.78780 1.90873 1.19192 1.83317 1.57580 1.47679 1.17451 1.06671 1.65811 1.22272 0.83016 0.98463 0.99746 1.22619 0.97176 0.91512 1.04392 1.22802 0.94774 0.96956 1.01739 1.22280 0.96880 0.82952 0.98532 1.20688 0.83655 0.81814 0.84642 1.90619 1.28658 1.69613 1.56417 1.46554 1.33863 1.20916 1.33560 1.18427 0.92109 0.88986 0.82906 0.98006 1.21592 0.96289 1.25922 1.14846 0.91566 1.25678 0.97686 0.97791 0.96938 1.70038 1.20428 1.40092 1.24346 0.85411 0.79378 0.78305 0.77946 1.18753 1.20303 1.21105 1.21750 0.95617 0.98622 0.99766 1.21762 0.97893 0.98748 1.00132 0.91319 0.93800 0.91529 0.89421 0.91534 0.93472 0.90533 0.92623 0.75508 0.92065 0.90842 0.88863 0.88327 0.87092 0.90928 0.90800 0.92151 0.76079 0.92621 0.93984 0.91061 0.92807 0.93715 0.95370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 9.03 71.98 0.65 -3.11 16 2 C -0.14 -3.51 4.86 30.59 0.15 -3.36 16 3 C -0.08 -2.24 2.41 -10.79 -0.03 -2.27 16 4 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 5 C -0.15 -3.71 8.77 71.98 0.63 -3.08 16 6 C 0.15 4.91 2.08 44.24 0.09 5.00 16 7 H 0.10 3.45 5.85 -2.39 -0.01 3.43 16 8 N -0.72 -21.83 4.03 -461.40 -1.86 -23.70 16 9 C 0.72 22.38 8.48 179.05 1.52 23.89 16 10 O -0.63 -23.67 16.17 -4.00 -0.06 -23.73 16 11 N -0.64 -14.99 3.33 -829.81 -2.76 -17.75 16 12 C 0.09 1.47 6.16 86.73 0.53 2.01 16 13 C -0.12 -1.18 6.95 31.78 0.22 -0.95 16 14 C -0.12 -1.36 7.08 31.98 0.23 -1.13 16 15 C 0.12 2.12 6.91 86.85 0.60 2.72 16 16 C 0.51 19.67 4.49 87.66 0.39 20.06 16 17 O -0.57 -25.28 13.20 -3.01 -0.04 -25.32 16 18 N -0.70 -28.65 3.58 -446.12 -1.60 -30.24 16 19 C 0.28 13.97 2.22 44.24 0.10 14.07 16 20 H 0.00 0.12 7.52 -2.39 -0.02 0.10 16 21 C -0.55 -28.87 8.73 25.60 0.22 -28.64 16 22 H 0.07 3.34 7.76 -2.91 -0.02 3.32 16 23 C 0.02 1.04 5.29 84.65 0.45 1.49 16 24 N -0.91 -51.28 11.29 21.45 0.24 -51.04 16 25 Si 0.96 42.14 29.54 68.60 2.03 44.16 16 26 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 27 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 28 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 29 C -0.12 -5.62 5.45 30.59 0.17 -5.46 16 30 C -0.13 -5.44 8.47 71.98 0.61 -4.83 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.04 1.16 5.83 -2.39 -0.01 1.14 16 33 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.07 2.00 5.12 -2.39 -0.01 1.99 16 36 H 0.05 1.40 5.08 -2.38 -0.01 1.38 16 37 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.05 1.38 7.22 -2.39 -0.02 1.36 16 39 H 0.41 12.02 6.62 -92.71 -0.61 11.40 16 40 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 41 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.06 1.31 8.03 -2.39 -0.02 1.29 16 48 H 0.40 14.86 5.56 -92.70 -0.52 14.35 16 49 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 50 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 51 H 0.07 3.82 5.93 -2.39 -0.01 3.81 16 52 H 0.05 2.12 3.80 -2.39 -0.01 2.11 16 53 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 54 H 0.03 1.30 7.68 -2.39 -0.02 1.28 16 Total: -1.00 -67.98 404.12 2.26 -65.72 By element: Atomic # 1 Polarization: 45.72 SS G_CDS: -0.22 Total: 45.50 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 6.54 Total: 16.40 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -5.98 Total: -122.73 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -0.10 Total: -49.05 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -67.98 2.26 -65.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358084494.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.903 kcal (2) G-P(sol) polarization free energy of solvation -67.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds