Wall clock time and date at job start Wed Apr 1 2020 00:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47065 * 2 1 4 4 N 1.46900 * 109.47061 * 174.86373 * 3 2 1 5 5 C 1.47902 * 111.00278 * 175.71133 * 4 3 2 6 6 C 1.53996 * 107.05747 * 214.15625 * 5 4 3 7 7 C 1.54592 * 105.13976 * 1.21828 * 6 5 4 8 8 H 1.09001 * 110.72581 * 263.59954 * 7 6 5 9 9 C 1.53004 * 110.72279 * 140.49630 * 7 6 5 10 10 N 1.46504 * 109.46962 * 66.45295 * 9 7 6 11 11 C 1.34779 * 119.99911 * 180.02562 * 10 9 7 12 12 O 1.21344 * 119.99770 * 0.02562 * 11 10 9 13 13 C 1.49448 * 119.99630 * 180.02562 * 11 10 9 14 14 O 1.21344 * 120.00600 * 359.97438 * 13 11 10 15 15 N 1.34779 * 119.99630 * 179.97438 * 13 11 10 16 16 C 1.46504 * 119.99911 * 179.97438 * 15 13 11 17 17 C 1.53004 * 109.46962 * 179.97438 * 16 15 13 18 18 C 1.52992 * 109.47079 * 300.00081 * 17 16 15 19 19 C 1.53002 * 109.47134 * 60.00174 * 17 16 15 20 20 C 1.50701 * 109.46907 * 180.02562 * 17 16 15 21 21 H 1.08001 * 119.99825 * 359.97438 * 20 17 16 22 22 C 1.37874 * 119.99513 * 180.02562 * 20 17 16 23 23 N 1.31505 * 120.00476 * 359.97438 * 22 20 17 24 24 Si 1.86803 * 119.99497 * 179.97438 * 22 20 17 25 25 H 1.48499 * 109.47109 * 89.99925 * 24 22 20 26 26 H 1.48507 * 109.47054 * 210.00044 * 24 22 20 27 27 H 1.48503 * 109.47314 * 329.99520 * 24 22 20 28 28 C 1.48531 * 111.00265 * 58.30897 * 4 3 2 29 29 H 1.08994 * 109.47095 * 59.99890 * 1 2 3 30 30 H 1.08998 * 109.46997 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46741 * 300.00139 * 1 2 3 32 32 H 1.09002 * 109.46830 * 240.00296 * 2 1 3 33 33 H 1.08995 * 109.47619 * 120.00146 * 2 1 3 34 34 H 1.09003 * 109.46781 * 294.85595 * 3 2 1 35 35 H 1.08997 * 109.47098 * 54.85963 * 3 2 1 36 36 H 1.09005 * 109.90884 * 333.50456 * 5 4 3 37 37 H 1.08994 * 109.92133 * 94.59896 * 5 4 3 38 38 H 1.08996 * 110.30755 * 120.13678 * 6 5 4 39 39 H 1.09000 * 110.30431 * 242.20664 * 6 5 4 40 40 H 1.08996 * 109.46847 * 186.45263 * 9 7 6 41 41 H 1.08994 * 109.47027 * 306.45596 * 9 7 6 42 42 H 0.97005 * 119.99566 * 0.02562 * 10 9 7 43 43 H 0.97006 * 119.99950 * 359.97438 * 15 13 11 44 44 H 1.08996 * 109.46799 * 299.99756 * 16 15 13 45 45 H 1.08994 * 109.47004 * 60.00246 * 16 15 13 46 46 H 1.08999 * 109.47585 * 60.00081 * 18 17 16 47 47 H 1.09005 * 109.47428 * 179.97438 * 18 17 16 48 48 H 1.08994 * 109.47370 * 300.00009 * 18 17 16 49 49 H 1.09007 * 109.47134 * 59.99455 * 19 17 16 50 50 H 1.08995 * 109.47189 * 179.97438 * 19 17 16 51 51 H 1.09005 * 109.47154 * 300.00162 * 19 17 16 52 52 H 0.97003 * 120.00361 * 180.02562 * 23 22 20 53 53 H 1.08997 * 110.67125 * 278.15610 * 28 4 3 54 54 H 1.09004 * 110.66797 * 41.29205 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5037 1.4444 0.1240 5 6 4.0424 2.8183 0.0248 6 6 5.4064 2.7187 -0.6831 7 6 5.5868 1.2169 -1.0025 8 1 6.1871 0.7286 -0.2349 9 6 6.2197 1.0292 -2.3828 10 7 7.5914 1.5437 -2.3651 11 6 8.3479 1.4840 -3.4789 12 8 7.8928 1.0046 -4.4965 13 6 9.7473 2.0082 -3.4605 14 8 10.2023 2.4880 -2.4431 15 7 10.5041 1.9481 -4.5742 16 6 11.8757 2.4625 -4.5564 17 6 12.5089 2.2743 -5.9365 18 6 12.5269 0.7860 -6.2906 19 6 11.6916 3.0372 -6.9810 20 6 13.9200 2.8028 -5.9181 21 1 14.3246 3.2307 -5.0127 22 6 14.6941 2.7412 -7.0573 23 7 14.2013 2.2207 -8.1599 24 14 16.4431 3.3971 -7.0347 25 1 17.3746 2.3092 -6.6423 26 1 16.8032 3.8934 -8.3872 27 1 16.5417 4.5101 -6.0566 28 6 4.1329 0.6817 -0.9845 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.7538 1.9291 -0.9325 35 1 1.6034 1.9823 0.8403 36 1 3.3653 3.4412 -0.5597 37 1 4.1680 3.2408 1.0216 38 1 5.3986 3.3029 -1.6032 39 1 6.2015 3.0646 -0.0226 40 1 6.2325 -0.0309 -2.6355 41 1 5.6374 1.5731 -3.1265 42 1 7.9550 1.9272 -1.5516 43 1 10.1405 1.5642 -5.3875 44 1 11.8628 3.5227 -4.3037 45 1 12.4581 1.9187 -3.8127 46 1 11.5064 0.4032 -6.3039 47 1 12.9775 0.6519 -7.2741 48 1 13.1091 0.2425 -5.5466 49 1 11.6787 4.0976 -6.7286 50 1 12.1429 2.9035 -7.9641 51 1 10.6710 2.6545 -6.9942 52 1 14.7460 2.1770 -8.9613 53 1 4.1191 -0.3873 -0.7723 54 1 3.6331 0.8940 -1.9297 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422493912.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:19 Heat of formation + Delta-G solvation = -104.273016 kcal Electronic energy + Delta-G solvation = -29446.213024 eV Core-core repulsion = 25416.447810 eV Total energy + Delta-G solvation = -4029.765214 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.74262 -40.38298 -39.59302 -38.19190 -36.75003 -35.24557 -34.74987 -32.74439 -32.12814 -30.30973 -28.30866 -27.58659 -27.41606 -26.93977 -25.76913 -24.14280 -22.76688 -21.69467 -21.38398 -21.09791 -20.69022 -19.59643 -18.03028 -17.70988 -17.37141 -16.94923 -16.89969 -16.55106 -16.46191 -16.12865 -15.76070 -15.56540 -15.04760 -14.89684 -14.74172 -14.62276 -14.21552 -14.08181 -14.04077 -13.84587 -13.57322 -13.21172 -13.12918 -12.95185 -12.81103 -12.73939 -12.69832 -12.58446 -12.27842 -12.27470 -12.12271 -12.10730 -11.98230 -11.76595 -11.54315 -11.50592 -11.48354 -11.30059 -10.76967 -10.63509 -10.40793 -10.33813 -10.11762 -9.40493 -8.00985 -6.17481 0.35024 1.34637 1.44802 1.48027 1.55907 2.15069 2.45761 2.69931 2.97212 3.23014 3.44324 3.56935 3.69309 3.78091 4.06253 4.14665 4.25584 4.32490 4.34711 4.39906 4.46729 4.47547 4.59052 4.62993 4.67542 4.68098 4.75244 4.83408 4.85592 4.92749 4.95350 5.00409 5.04067 5.05987 5.12126 5.14204 5.17311 5.19938 5.21996 5.28987 5.30583 5.40784 5.48257 5.64858 5.67995 5.89358 5.94836 6.08481 6.11377 6.19128 6.39041 6.41738 6.73744 6.86755 6.96786 7.50560 8.98262 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.036691 B = 0.001623 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.941506 B =17251.428521 C =17638.479488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C 0.047 3.953 4 N -0.528 5.528 5 C 0.036 3.964 6 C -0.130 4.130 7 C -0.096 4.096 8 H 0.098 0.902 9 C 0.128 3.872 10 N -0.685 5.685 11 C 0.513 3.487 12 O -0.542 6.542 13 C 0.497 3.503 14 O -0.551 6.551 15 N -0.682 5.682 16 C 0.144 3.856 17 C 0.048 3.952 18 C -0.122 4.122 19 C -0.122 4.122 20 C -0.526 4.526 21 H 0.051 0.949 22 C 0.027 3.973 23 N -0.901 5.901 24 Si 0.948 3.052 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.273 1.273 28 C 0.046 3.954 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.420 0.580 43 H 0.413 0.587 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.029 0.971 47 H 0.063 0.937 48 H 0.023 0.977 49 H 0.023 0.977 50 H 0.063 0.937 51 H 0.029 0.971 52 H 0.260 0.740 53 H 0.092 0.908 54 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.530 -2.899 15.696 30.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.081 4.081 4 N -0.252 5.252 5 C -0.092 4.092 6 C -0.168 4.168 7 C -0.115 4.115 8 H 0.116 0.884 9 C 0.005 3.995 10 N -0.338 5.338 11 C 0.293 3.707 12 O -0.420 6.420 13 C 0.278 3.722 14 O -0.430 6.430 15 N -0.334 5.334 16 C 0.021 3.979 17 C 0.047 3.953 18 C -0.180 4.180 19 C -0.180 4.180 20 C -0.564 4.564 21 H 0.070 0.930 22 C -0.173 4.173 23 N -0.539 5.539 24 Si 0.774 3.226 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.198 1.198 28 C -0.082 4.082 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.257 0.743 43 H 0.251 0.749 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.048 0.952 47 H 0.082 0.918 48 H 0.042 0.958 49 H 0.042 0.958 50 H 0.082 0.918 51 H 0.048 0.952 52 H 0.069 0.931 53 H 0.110 0.890 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.383 -3.155 16.009 30.175 hybrid contribution 0.970 0.795 -1.051 1.636 sum -24.413 -2.360 14.958 28.728 Atomic orbital electron populations 1.21723 0.94845 1.02213 1.01986 1.21522 0.96251 0.95646 1.02388 1.22375 0.87225 0.97975 1.00568 1.64821 1.06101 1.11075 1.43159 1.22866 0.95218 0.90076 1.01000 1.22525 0.97689 0.95613 1.00972 1.22252 0.96794 0.96948 0.95529 0.88392 1.21564 0.79958 1.00097 0.97866 1.45694 1.14421 1.60557 1.13145 1.19980 0.86307 0.79911 0.84452 1.90756 1.73567 1.45141 1.32525 1.20354 0.87173 0.80544 0.84163 1.90713 1.74061 1.46011 1.32219 1.46083 1.14700 1.59196 1.13408 1.21542 0.79184 0.97588 0.99609 1.18412 0.93881 0.93626 0.89380 1.21690 0.97732 0.96500 1.02105 1.21692 0.96458 0.97660 1.02220 1.21234 0.97940 1.40239 0.97007 0.93036 1.25483 1.01219 0.95316 0.95255 1.69921 1.37212 1.45312 1.01491 0.85719 0.81098 0.78621 0.77115 1.20532 1.21117 1.19770 1.23166 0.92267 0.99614 0.93134 0.92735 0.92090 0.92358 0.92045 0.91546 0.94783 0.90447 0.93545 0.89919 0.91336 0.89993 0.90402 0.91042 0.74289 0.74922 0.92717 0.92701 0.95187 0.91837 0.95770 0.95771 0.91830 0.95183 0.93062 0.88955 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 71.98 0.71 -0.49 16 2 C -0.12 -1.17 5.61 30.60 0.17 -1.00 16 3 C 0.05 0.51 4.84 86.31 0.42 0.93 16 4 N -0.53 -6.70 5.35 -883.00 -4.73 -11.43 16 5 C 0.04 0.43 6.70 86.45 0.58 1.01 16 6 C -0.13 -1.56 6.19 31.47 0.19 -1.36 16 7 C -0.10 -1.15 3.12 -9.59 -0.03 -1.18 16 8 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 9 C 0.13 2.04 5.02 86.38 0.43 2.47 16 10 N -0.68 -14.16 5.39 -464.41 -2.50 -16.67 16 11 C 0.51 14.68 7.89 87.27 0.69 15.37 16 12 O -0.54 -17.76 16.48 -3.23 -0.05 -17.81 16 13 C 0.50 16.71 7.89 87.27 0.69 17.40 16 14 O -0.55 -20.25 16.48 -3.23 -0.05 -20.30 16 15 N -0.68 -24.62 4.95 -464.41 -2.30 -26.92 16 16 C 0.14 5.93 4.50 86.38 0.39 6.32 16 17 C 0.05 2.20 0.50 -52.93 -0.03 2.18 16 18 C -0.12 -5.56 8.08 71.98 0.58 -4.98 16 19 C -0.12 -5.55 8.08 71.98 0.58 -4.97 16 20 C -0.53 -27.27 8.01 25.60 0.21 -27.06 16 21 H 0.05 2.68 7.74 -2.91 -0.02 2.65 16 22 C 0.03 1.41 5.15 84.66 0.44 1.85 16 23 N -0.90 -48.16 9.35 21.44 0.20 -47.96 16 24 Si 0.95 42.12 29.54 68.60 2.03 44.15 16 25 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 26 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 28 C 0.05 0.54 4.81 86.65 0.42 0.95 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 32 H 0.06 0.61 7.18 -2.39 -0.02 0.59 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.03 0.38 7.97 -2.39 -0.02 0.36 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.05 0.54 7.67 -2.38 -0.02 0.52 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 0.89 7.80 -2.39 -0.02 0.88 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.21 8.07 -2.39 -0.02 1.19 16 42 H 0.42 7.77 7.80 -92.70 -0.72 7.04 16 43 H 0.41 14.59 5.64 -92.70 -0.52 14.07 16 44 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.03 1.19 6.86 -2.39 -0.02 1.17 16 47 H 0.06 3.20 6.07 -2.38 -0.01 3.19 16 48 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 50 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 51 H 0.03 1.19 6.86 -2.38 -0.02 1.17 16 52 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 53 H 0.09 0.99 7.77 -2.39 -0.02 0.97 16 54 H 0.05 0.59 7.93 -2.39 -0.02 0.57 16 Total: -1.00 -58.95 420.76 -1.33 -60.28 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: -0.36 Total: 29.22 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 6.44 Total: 7.44 kcal Atomic # 7 Polarization: -93.65 SS G_CDS: -9.33 Total: -102.98 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -0.11 Total: -38.11 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -58.95 -1.33 -60.28 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422493912.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.991 kcal (2) G-P(sol) polarization free energy of solvation -58.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds