Wall clock time and date at job start Tue Mar 31 2020 23:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47241 * 2 1 4 4 H 1.08992 * 109.47372 * 305.00475 * 3 2 1 5 5 N 1.46504 * 109.46641 * 65.00454 * 3 2 1 6 6 C 1.34779 * 119.99865 * 274.99502 * 5 3 2 7 7 O 1.21595 * 119.99628 * 0.02562 * 6 5 3 8 8 N 1.34771 * 119.99941 * 180.02562 * 6 5 3 9 9 C 1.46499 * 119.99825 * 180.02562 * 8 6 5 10 10 C 1.53048 * 109.46099 * 204.99925 * 9 8 6 11 11 C 1.53195 * 109.31121 * 178.62881 * 10 9 8 12 12 N 1.46920 * 108.77864 * 54.63533 * 11 10 9 13 13 C 1.36934 * 120.63313 * 126.36616 * 12 11 10 14 14 H 1.08001 * 119.99927 * 332.09649 * 13 12 11 15 15 C 1.38807 * 120.00602 * 152.09727 * 13 12 11 16 16 N 1.31626 * 119.99337 * 335.49756 * 15 13 12 17 17 Si 1.86796 * 120.00478 * 155.49473 * 15 13 12 18 18 H 1.48498 * 109.47307 * 179.97438 * 17 15 13 19 19 H 1.48504 * 109.47181 * 300.00019 * 17 15 13 20 20 H 1.48498 * 109.47169 * 60.00129 * 17 15 13 21 21 C 1.46924 * 118.73923 * 306.64439 * 12 11 10 22 22 C 1.52767 * 109.01115 * 53.30512 * 21 12 11 23 23 C 1.53001 * 109.47342 * 184.99913 * 3 2 1 24 24 H 1.09004 * 109.52450 * 300.00299 * 23 3 2 25 25 C 1.53172 * 109.52266 * 179.87593 * 23 3 2 26 26 C 1.53175 * 109.03598 * 183.11549 * 25 23 3 27 27 C 1.53086 * 109.16525 * 56.98184 * 26 25 23 28 28 O 1.42900 * 109.41690 * 302.39116 * 27 26 25 29 29 C 1.42916 * 114.15083 * 61.12225 * 28 27 26 30 30 H 1.09005 * 109.47023 * 299.99861 * 1 2 3 31 31 H 1.08999 * 109.47122 * 59.99614 * 1 2 3 32 32 H 1.09002 * 109.47335 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47023 * 240.00139 * 2 1 3 34 34 H 1.08999 * 109.47122 * 120.00386 * 2 1 3 35 35 H 0.96998 * 120.00333 * 95.00380 * 5 3 2 36 36 H 0.96998 * 120.00257 * 0.02562 * 8 6 5 37 37 H 1.09000 * 109.46200 * 324.97376 * 9 8 6 38 38 H 1.08997 * 109.49308 * 58.67974 * 10 9 8 39 39 H 1.08994 * 109.52076 * 298.59403 * 10 9 8 40 40 H 1.09001 * 109.58367 * 294.84447 * 11 10 9 41 41 H 1.09006 * 109.69962 * 174.49286 * 11 10 9 42 42 H 0.96993 * 120.00327 * 354.23978 * 16 15 13 43 43 H 1.09001 * 109.59229 * 173.14076 * 21 12 11 44 44 H 1.09001 * 109.58432 * 293.56575 * 21 12 11 45 45 H 1.08997 * 109.56302 * 185.55244 * 22 21 12 46 46 H 1.09000 * 109.38057 * 65.51841 * 22 21 12 47 47 H 1.08995 * 109.54566 * 302.98438 * 25 23 3 48 48 H 1.08996 * 109.54573 * 63.25144 * 25 23 3 49 49 H 1.09003 * 109.52828 * 176.88854 * 26 25 23 50 50 H 1.09000 * 109.52318 * 297.07385 * 26 25 23 51 51 H 1.09002 * 109.48220 * 62.37009 * 27 26 25 52 52 H 1.09002 * 109.49030 * 182.39683 * 27 26 25 53 53 H 1.09002 * 109.53577 * 178.92878 * 29 28 27 54 54 H 1.08999 * 109.42546 * 58.89509 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 7 1.6524 2.0974 1.2519 6 6 0.4351 2.6643 1.3671 7 8 -0.3415 2.6318 0.4321 8 7 0.0788 3.2672 2.5186 9 6 -1.2445 3.8830 2.6440 10 6 -1.1964 4.9830 3.7070 11 6 -2.5728 5.6475 3.8110 12 7 -3.5815 4.6093 4.0624 13 6 -4.4380 4.7115 5.1259 14 1 -4.1366 5.2503 6.0120 15 6 -5.6934 4.1225 5.0653 16 7 -6.2593 3.8982 3.8982 17 14 -6.5798 3.6482 6.6397 18 1 -7.8936 3.0424 6.3049 19 1 -5.7590 2.6665 7.3933 20 1 -6.7916 4.8592 7.4725 21 6 -3.6497 3.4561 3.1545 22 6 -2.2649 2.8188 3.0545 23 6 3.5648 1.4443 -0.1257 24 1 4.0004 0.9054 0.7158 25 6 4.0764 2.8881 -0.1289 26 6 5.5944 2.8798 -0.3333 27 6 5.9222 2.1444 -1.6354 28 8 5.3918 0.8187 -1.5787 29 6 3.9709 0.7630 -1.4351 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.2719 2.1230 1.9979 36 1 0.6986 3.2934 3.2643 37 1 -1.5360 4.3154 1.6868 38 1 -0.4529 5.7286 3.4254 39 1 -0.9289 4.5477 4.6697 40 1 -2.8020 6.1613 2.8774 41 1 -2.5737 6.3643 4.6323 42 1 -5.8383 4.2190 3.0854 43 1 -4.3592 2.7259 3.5439 44 1 -3.9686 3.7875 2.1663 45 1 -2.2819 2.0241 2.3088 46 1 -1.9873 2.4030 4.0231 47 1 3.6023 3.4411 -0.9397 48 1 3.8394 3.3611 0.8241 49 1 5.9598 3.9051 -0.3922 50 1 6.0718 2.3696 0.5033 51 1 5.4781 2.6778 -2.4759 52 1 7.0035 2.0982 -1.7647 53 1 3.6467 -0.2776 -1.4192 54 1 3.5014 1.2774 -2.2735 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883348875.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:10 Heat of formation + Delta-G solvation = -98.094991 kcal Electronic energy + Delta-G solvation = -31126.445178 eV Core-core repulsion = 27096.947863 eV Total energy + Delta-G solvation = -4029.497315 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.56544 -40.41598 -39.33206 -37.40816 -36.04598 -34.29433 -34.17569 -33.14174 -31.94504 -31.85636 -30.80402 -27.32582 -26.59716 -25.86753 -24.10290 -23.86701 -23.71742 -22.04576 -21.59794 -21.17736 -21.01769 -19.59498 -19.03268 -17.85923 -17.10584 -16.97210 -16.66510 -16.30808 -16.03206 -15.90560 -15.63741 -15.40201 -15.31902 -15.17948 -15.07015 -14.88502 -14.58649 -14.25717 -14.03176 -13.87335 -13.52132 -13.46874 -13.35730 -12.96210 -12.83469 -12.60768 -12.47201 -12.40928 -12.09341 -12.08794 -11.97383 -11.92709 -11.85413 -11.73372 -11.60740 -11.41870 -11.31737 -11.23426 -11.10751 -10.48871 -10.44097 -10.18037 -9.73090 -8.96670 -8.25727 -5.41589 1.58371 1.65837 1.70397 1.84918 2.24077 2.66235 2.91554 3.20826 3.26573 3.53173 3.57065 3.74373 3.79172 3.86573 3.98123 4.04310 4.15888 4.20238 4.22489 4.24635 4.32155 4.34591 4.50602 4.51369 4.53560 4.65117 4.65903 4.72910 4.76236 4.77780 4.88603 4.91908 4.96286 4.98543 5.01027 5.04756 5.05496 5.09089 5.15206 5.15822 5.18057 5.20716 5.36532 5.40393 5.46183 5.60751 5.63327 5.83999 6.06502 6.24650 6.37244 7.03792 7.17378 7.68645 7.76225 8.21687 8.99773 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025688 B = 0.002188 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.728000 B =12794.535376 C =13432.831445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.131 4.131 3 C 0.175 3.825 4 H 0.065 0.935 5 N -0.725 5.725 6 C 0.700 3.300 7 O -0.625 6.625 8 N -0.729 5.729 9 C 0.186 3.814 10 C -0.120 4.120 11 C 0.143 3.857 12 N -0.617 5.617 13 C -0.353 4.353 14 H 0.058 0.942 15 C -0.081 4.081 16 N -0.945 5.945 17 Si 1.116 2.884 18 H -0.295 1.295 19 H -0.278 1.278 20 H -0.273 1.273 21 C 0.163 3.837 22 C -0.124 4.124 23 C -0.116 4.116 24 H 0.095 0.905 25 C -0.116 4.116 26 C -0.151 4.151 27 C 0.051 3.949 28 O -0.398 6.398 29 C 0.065 3.935 30 H 0.033 0.967 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.408 0.592 36 H 0.409 0.591 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.012 0.988 41 H 0.064 0.936 42 H 0.252 0.748 43 H 0.044 0.956 44 H -0.005 1.005 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.054 0.946 48 H 0.073 0.927 49 H 0.084 0.916 50 H 0.074 0.926 51 H 0.051 0.949 52 H 0.105 0.895 53 H 0.109 0.891 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.734 -4.890 -7.058 29.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.170 4.170 3 C 0.070 3.930 4 H 0.084 0.916 5 N -0.381 5.381 6 C 0.401 3.599 7 O -0.506 6.506 8 N -0.384 5.384 9 C 0.080 3.920 10 C -0.159 4.159 11 C 0.017 3.983 12 N -0.341 5.341 13 C -0.483 4.483 14 H 0.076 0.924 15 C -0.277 4.277 16 N -0.587 5.587 17 Si 0.940 3.060 18 H -0.221 1.221 19 H -0.204 1.204 20 H -0.198 1.198 21 C 0.036 3.964 22 C -0.164 4.164 23 C -0.135 4.135 24 H 0.114 0.886 25 C -0.154 4.154 26 C -0.188 4.188 27 C -0.025 4.025 28 O -0.317 6.317 29 C -0.012 4.012 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.245 0.755 36 H 0.245 0.755 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.030 0.970 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.013 0.987 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.092 0.908 49 H 0.103 0.897 50 H 0.093 0.907 51 H 0.069 0.931 52 H 0.123 0.877 53 H 0.127 0.873 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 26.811 -5.780 -7.302 28.382 hybrid contribution 0.917 1.170 -0.250 1.508 sum 27.728 -4.610 -7.551 29.106 Atomic orbital electron populations 1.21705 0.96852 1.00006 1.01172 1.22045 0.95110 0.96297 1.03534 1.20758 0.93597 0.92725 0.85920 0.91642 1.44963 1.14937 1.60489 1.17706 1.16094 0.82573 0.78305 0.82972 1.90933 1.53240 1.65930 1.40457 1.45083 1.17569 1.60651 1.15070 1.20388 0.81020 0.92247 0.98380 1.22107 0.98050 0.97408 0.98369 1.21034 0.88268 0.90701 0.98265 1.44383 1.38447 1.19933 1.31381 1.20249 0.96203 1.37845 0.93964 0.92433 1.27291 0.94719 1.00336 1.05327 1.70900 1.39487 1.49347 0.98981 0.82846 0.74641 0.76973 0.71493 1.22145 1.20444 1.19815 1.20591 0.95006 0.89585 0.91216 1.22130 0.96018 0.98036 1.00214 1.21956 0.93071 0.97910 1.00596 0.88648 1.21615 0.95749 0.95415 1.02627 1.22162 0.95882 1.01912 0.98861 1.22767 1.00016 0.82941 0.96779 1.87934 1.21502 1.28186 1.94031 1.22710 0.81054 1.02254 0.95184 0.94755 0.94305 0.93169 0.89227 0.90634 0.75531 0.75517 0.92553 0.88972 0.90861 0.96972 0.91766 0.93825 0.93740 0.98686 0.93406 0.92224 0.92739 0.90849 0.89746 0.90709 0.93062 0.87679 0.87339 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 8.51 71.98 0.61 -2.91 16 2 C -0.13 -2.22 5.40 30.59 0.17 -2.06 16 3 C 0.18 2.95 1.84 44.99 0.08 3.03 16 4 H 0.07 1.47 7.58 -2.39 -0.02 1.45 16 5 N -0.72 -12.88 4.40 -457.81 -2.01 -14.90 16 6 C 0.70 18.95 7.10 179.06 1.27 20.22 16 7 O -0.63 -22.91 13.14 -4.02 -0.05 -22.96 16 8 N -0.73 -18.25 5.08 -457.67 -2.33 -20.58 16 9 C 0.19 6.18 2.42 45.02 0.11 6.29 16 10 C -0.12 -3.67 5.55 30.68 0.17 -3.50 16 11 C 0.14 5.82 6.52 86.36 0.56 6.38 16 12 N -0.62 -31.33 2.85 -699.93 -2.00 -33.33 16 13 C -0.35 -19.80 9.49 84.03 0.80 -19.00 16 14 H 0.06 3.16 7.94 -2.91 -0.02 3.13 16 15 C -0.08 -4.68 4.70 84.86 0.40 -4.28 16 16 N -0.95 -59.43 12.42 21.65 0.27 -59.16 16 17 Si 1.12 51.33 29.98 68.60 2.06 53.39 16 18 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 19 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 21 C 0.16 8.17 4.66 86.22 0.40 8.57 16 22 C -0.12 -4.95 5.63 30.53 0.17 -4.78 16 23 C -0.12 -1.37 2.02 -10.71 -0.02 -1.39 16 24 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 25 C -0.12 -1.35 5.11 30.71 0.16 -1.19 16 26 C -0.15 -1.42 6.14 30.68 0.19 -1.23 16 27 C 0.05 0.56 6.84 72.01 0.49 1.05 16 28 O -0.40 -6.03 10.76 -148.98 -1.60 -7.63 16 29 C 0.07 0.82 5.72 72.01 0.41 1.23 16 30 H 0.03 1.05 5.64 -2.38 -0.01 1.03 16 31 H 0.04 1.12 7.84 -2.39 -0.02 1.10 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.17 6.24 -2.38 -0.01 1.16 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.41 4.71 8.42 -92.71 -0.78 3.93 16 36 H 0.41 7.27 8.62 -92.71 -0.80 6.47 16 37 H 0.06 2.20 7.58 -2.39 -0.02 2.18 16 38 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 39 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.06 2.53 7.93 -2.38 -0.02 2.51 16 42 H 0.25 16.31 6.69 -92.71 -0.62 15.69 16 43 H 0.04 2.53 6.32 -2.39 -0.02 2.51 16 44 H 0.00 -0.26 7.86 -2.39 -0.02 -0.28 16 45 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 47 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.07 0.80 7.57 -2.39 -0.02 0.79 16 49 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 52 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 53 H 0.11 1.15 6.47 -2.39 -0.02 1.13 16 54 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -74.67 404.26 -0.24 -74.91 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: -0.54 Total: 23.81 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 5.97 Total: 6.44 kcal Atomic # 7 Polarization: -121.89 SS G_CDS: -6.07 Total: -127.96 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -1.66 Total: -30.59 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.06 Total: 53.39 kcal Total: -74.67 -0.24 -74.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883348875.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.189 kcal (2) G-P(sol) polarization free energy of solvation -74.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds