Wall clock time and date at job start Tue Mar 31 2020 23:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47354 * 2 1 4 4 H 1.09000 * 109.46735 * 54.99771 * 3 2 1 5 5 C 1.52993 * 109.47342 * 174.99794 * 3 2 1 6 6 N 1.46904 * 109.47230 * 175.81677 * 5 3 2 7 7 C 1.47009 * 111.00387 * 199.09388 * 6 5 3 8 8 C 1.53102 * 109.25850 * 177.61057 * 7 6 5 9 9 O 1.43017 * 109.25872 * 56.84589 * 8 7 6 10 10 C 1.43009 * 113.73726 * 301.32884 * 9 8 7 11 11 C 1.47018 * 110.99721 * 75.45405 * 6 5 3 12 12 N 1.46498 * 109.47007 * 295.00319 * 3 2 1 13 13 C 1.34776 * 120.00530 * 103.62026 * 12 3 2 14 14 O 1.21585 * 119.99525 * 355.61237 * 13 12 3 15 15 N 1.34772 * 120.00305 * 175.61130 * 13 12 3 16 16 C 1.46927 * 120.62872 * 185.20571 * 15 13 12 17 17 C 1.52764 * 109.00440 * 233.58204 * 16 15 13 18 18 C 1.53039 * 109.38627 * 305.58778 * 17 16 15 19 19 C 1.50702 * 109.45236 * 181.25580 * 18 17 16 20 20 H 1.07997 * 119.99911 * 239.93936 * 19 18 17 21 21 C 1.37875 * 119.99783 * 59.93575 * 19 18 17 22 22 N 1.31513 * 120.00181 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99795 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46828 * 90.00394 * 23 21 19 25 25 H 1.48498 * 109.47287 * 210.00327 * 23 21 19 26 26 H 1.48497 * 109.47262 * 330.00452 * 23 21 19 27 27 C 1.53037 * 109.53888 * 61.23910 * 18 17 16 28 28 C 1.46924 * 120.63137 * 5.48135 * 15 13 12 29 29 H 1.09000 * 109.47139 * 299.99944 * 1 2 3 30 30 H 1.08996 * 109.46969 * 60.00259 * 1 2 3 31 31 H 1.09004 * 109.47089 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47846 * 239.99922 * 2 1 3 33 33 H 1.09004 * 109.47218 * 119.99929 * 2 1 3 34 34 H 1.08996 * 109.47711 * 295.81583 * 5 3 2 35 35 H 1.08999 * 109.47594 * 55.82257 * 5 3 2 36 36 H 1.09008 * 109.50412 * 297.54128 * 7 6 5 37 37 H 1.09000 * 109.51020 * 57.67304 * 7 6 5 38 38 H 1.08995 * 109.50450 * 296.90820 * 8 7 6 39 39 H 1.09005 * 109.54144 * 176.80413 * 8 7 6 40 40 H 1.08995 * 109.51098 * 298.73752 * 10 9 8 41 41 H 1.09005 * 109.54200 * 178.62709 * 10 9 8 42 42 H 1.08993 * 109.51086 * 302.32757 * 11 6 5 43 43 H 1.09003 * 109.50200 * 62.46382 * 11 6 5 44 44 H 0.97006 * 119.99518 * 283.89523 * 12 3 2 45 45 H 1.09000 * 109.58748 * 353.41577 * 16 15 13 46 46 H 1.08999 * 109.58456 * 113.84888 * 16 15 13 47 47 H 1.09005 * 109.56472 * 185.55384 * 17 16 15 48 48 H 1.08998 * 109.39091 * 65.51767 * 17 16 15 49 49 H 1.09004 * 109.45784 * 301.22113 * 18 17 16 50 50 H 0.97000 * 120.00028 * 179.97438 * 22 21 19 51 51 H 1.09000 * 109.50360 * 178.68238 * 27 18 17 52 52 H 1.09005 * 109.52497 * 58.60133 * 27 18 17 53 53 H 1.09001 * 109.59241 * 246.15780 * 28 15 13 54 54 H 1.09003 * 109.58851 * 6.44062 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1258 6 7 4.0628 2.8227 0.0252 7 6 5.4937 2.8428 -0.3115 8 6 5.9561 4.2942 -0.4647 9 8 5.6736 5.0091 0.7414 10 6 4.2889 5.0105 1.0988 11 6 3.8095 3.5663 1.2679 12 7 1.6524 2.0975 -1.2518 13 6 0.6278 2.9729 -1.2652 14 8 -0.0257 3.1593 -0.2570 15 7 0.3276 3.6417 -2.3961 16 6 -0.7110 4.6810 -2.3979 17 6 -1.7267 4.3674 -3.4950 18 6 -0.9977 4.2046 -4.8307 19 6 -2.0014 3.9257 -5.9196 20 1 -1.9415 3.0089 -6.4874 21 6 -2.9963 4.8409 -6.1910 22 7 -3.0690 5.9574 -5.4999 23 14 -4.2401 4.4955 -7.5412 24 1 -5.4042 3.7727 -6.9687 25 1 -4.6966 5.7784 -8.1337 26 1 -3.6084 3.6608 -8.5944 27 6 -0.0107 3.0388 -4.7363 28 6 1.0284 3.3412 -3.6520 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8504 1.0244 1.0902 35 1 3.9962 0.8430 -0.6745 36 1 6.0617 2.3619 0.4850 37 1 5.6548 2.3087 -1.2479 38 1 5.4263 4.7591 -1.2960 39 1 7.0286 4.3167 -0.6584 40 1 3.7105 5.4962 0.3130 41 1 4.1548 5.5506 2.0361 42 1 2.7413 3.5605 1.4844 43 1 4.3507 3.0971 2.0895 44 1 2.1307 1.8981 -2.0718 45 1 -1.2133 4.6973 -1.4306 46 1 -0.2558 5.6521 -2.5920 47 1 -2.4462 5.1828 -3.5703 48 1 -2.2493 3.4426 -3.2507 49 1 -0.4556 5.1214 -5.0627 50 1 -3.7687 6.6015 -5.6910 51 1 0.4913 2.9085 -5.6950 52 1 -0.5485 2.1260 -4.4803 53 1 1.6284 4.2009 -3.9505 54 1 1.6754 2.4753 -3.5113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925593677.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:53 Heat of formation + Delta-G solvation = -93.114733 kcal Electronic energy + Delta-G solvation = -31913.924278 eV Core-core repulsion = 27884.642924 eV Total energy + Delta-G solvation = -4029.281354 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.42626 -40.46386 -38.80350 -37.56076 -35.76901 -35.33189 -33.48099 -32.52383 -32.13841 -31.51446 -30.23886 -27.98441 -27.06842 -25.01919 -24.73620 -23.92141 -23.60259 -22.11208 -21.50543 -21.24911 -20.34923 -18.93842 -18.29027 -17.56801 -17.41232 -17.02329 -16.54344 -16.45739 -16.12421 -15.99778 -15.74518 -15.64763 -15.12654 -15.02715 -14.87414 -14.59885 -14.49225 -14.27041 -14.13089 -13.74681 -13.65486 -13.38232 -13.20593 -12.97900 -12.82515 -12.72512 -12.49934 -12.45503 -12.36004 -12.24619 -12.14262 -11.93333 -11.85120 -11.68454 -11.49142 -11.40173 -11.13035 -10.87448 -10.75486 -10.68075 -10.39455 -9.96049 -9.33487 -9.23468 -8.05919 -6.20045 1.41439 1.43015 1.52061 1.85404 2.35247 2.44859 2.71640 2.94336 3.11789 3.20442 3.72757 3.94040 4.00757 4.11786 4.14495 4.19149 4.22828 4.25109 4.29125 4.35287 4.38248 4.46401 4.53559 4.59091 4.62746 4.65161 4.67243 4.73255 4.77251 4.80443 4.87531 4.92015 4.94676 5.00002 5.01940 5.04406 5.07442 5.20734 5.23499 5.27370 5.43544 5.50696 5.56024 5.69636 5.75145 5.99404 6.00624 6.05001 6.14843 6.16938 6.22347 6.40295 6.91704 7.19113 7.47979 7.77659 8.97294 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014898 B = 0.002883 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.033116 B = 9708.885764 C =10571.000984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.164 3.836 4 H 0.067 0.933 5 C 0.053 3.947 6 N -0.543 5.543 7 C 0.024 3.976 8 C 0.057 3.943 9 O -0.404 6.404 10 C 0.065 3.935 11 C 0.026 3.974 12 N -0.710 5.710 13 C 0.709 3.291 14 O -0.640 6.640 15 N -0.624 5.624 16 C 0.143 3.857 17 C -0.110 4.110 18 C 0.047 3.953 19 C -0.532 4.532 20 H 0.052 0.948 21 C 0.012 3.988 22 N -0.915 5.915 23 Si 0.950 3.050 24 H -0.281 1.281 25 H -0.285 1.285 26 H -0.266 1.266 27 C -0.115 4.115 28 C 0.124 3.876 29 H 0.036 0.964 30 H 0.025 0.975 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.045 0.955 37 H 0.105 0.895 38 H 0.050 0.950 39 H 0.116 0.884 40 H 0.042 0.958 41 H 0.106 0.894 42 H 0.072 0.928 43 H 0.048 0.952 44 H 0.403 0.597 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.070 0.930 48 H 0.017 0.983 49 H 0.002 0.998 50 H 0.260 0.740 51 H 0.071 0.929 52 H 0.043 0.957 53 H 0.068 0.932 54 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.958 -10.754 11.544 25.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C 0.058 3.942 4 H 0.085 0.915 5 C -0.076 4.076 6 N -0.269 5.269 7 C -0.103 4.103 8 C -0.019 4.019 9 O -0.323 6.323 10 C -0.012 4.012 11 C -0.103 4.103 12 N -0.367 5.367 13 C 0.411 3.589 14 O -0.522 6.522 15 N -0.360 5.360 16 C 0.019 3.981 17 C -0.149 4.149 18 C 0.029 3.971 19 C -0.570 4.570 20 H 0.070 0.930 21 C -0.186 4.186 22 N -0.555 5.555 23 Si 0.776 3.224 24 H -0.207 1.207 25 H -0.210 1.210 26 H -0.191 1.191 27 C -0.153 4.153 28 C 0.002 3.998 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.120 0.880 36 H 0.063 0.937 37 H 0.123 0.877 38 H 0.069 0.931 39 H 0.134 0.866 40 H 0.060 0.940 41 H 0.124 0.876 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.241 0.759 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.036 0.964 49 H 0.020 0.980 50 H 0.069 0.931 51 H 0.090 0.910 52 H 0.062 0.938 53 H 0.086 0.914 54 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 19.322 -10.121 12.004 24.897 hybrid contribution -1.072 -0.176 -0.646 1.264 sum 18.251 -10.297 11.358 23.835 Atomic orbital electron populations 1.21600 0.97009 1.00817 1.00389 1.21876 0.95093 0.95444 1.03918 1.20948 0.93977 0.92911 0.86342 0.91502 1.22483 0.93483 0.88807 1.02801 1.62070 1.16605 1.14756 1.33420 1.22804 0.87297 0.97813 1.02430 1.22839 1.01999 0.90685 0.86414 1.87945 1.25512 1.75201 1.43602 1.22627 0.81795 0.95670 1.01066 1.22678 1.01256 0.95123 0.91197 1.44856 1.34177 1.45310 1.12323 1.15900 0.81145 0.79103 0.82756 1.90813 1.55357 1.71411 1.34641 1.47311 1.40483 1.39624 1.08598 1.21222 0.88684 0.89089 0.99090 1.21682 0.98023 0.99936 0.95238 1.18577 0.93027 0.93387 0.92129 1.21595 1.13118 1.04261 1.18018 0.92954 1.25713 0.99487 0.95013 0.98399 1.69986 1.34254 1.09741 1.41533 0.85683 0.79403 0.77451 0.79863 1.20702 1.21022 1.19085 1.21858 0.96931 0.98564 0.97950 1.21686 0.93955 1.01268 0.82930 0.94429 0.95593 0.91871 0.90048 0.88995 0.91894 0.88045 0.93665 0.87692 0.93147 0.86597 0.93968 0.87585 0.91007 0.93422 0.75901 0.91795 0.92753 0.91166 0.96381 0.97961 0.93116 0.91002 0.93806 0.91367 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.41 71.98 0.68 -2.67 16 2 C -0.12 -2.05 5.61 30.59 0.17 -1.88 16 3 C 0.16 3.22 2.24 44.99 0.10 3.32 16 4 H 0.07 1.75 6.01 -2.39 -0.01 1.74 16 5 C 0.05 0.71 4.66 86.30 0.40 1.11 16 6 N -0.54 -9.24 4.40 -895.21 -3.94 -13.18 16 7 C 0.02 0.32 5.60 86.32 0.48 0.80 16 8 C 0.06 0.91 7.01 72.02 0.50 1.41 16 9 O -0.40 -8.60 10.83 -148.98 -1.61 -10.21 16 10 C 0.07 1.35 7.01 72.02 0.50 1.85 16 11 C 0.03 0.50 5.47 86.31 0.47 0.97 16 12 N -0.71 -17.00 4.22 -457.83 -1.93 -18.94 16 13 C 0.71 24.32 7.33 179.06 1.31 25.63 16 14 O -0.64 -26.73 14.95 -3.98 -0.06 -26.79 16 15 N -0.62 -22.32 2.98 -837.74 -2.49 -24.82 16 16 C 0.14 6.01 6.41 86.22 0.55 6.56 16 17 C -0.11 -5.36 5.14 30.53 0.16 -5.20 16 18 C 0.05 2.30 2.07 -11.51 -0.02 2.27 16 19 C -0.53 -28.83 8.56 25.60 0.22 -28.61 16 20 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 21 C 0.01 0.69 5.30 84.65 0.45 1.13 16 22 N -0.92 -52.68 11.31 21.45 0.24 -52.44 16 23 Si 0.95 43.57 29.54 68.60 2.03 45.59 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 27 C -0.11 -4.32 5.30 30.67 0.16 -4.16 16 28 C 0.12 3.75 6.39 86.36 0.55 4.30 16 29 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.02 0.77 7.06 -2.39 -0.02 0.75 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.06 0.72 7.99 -2.39 -0.02 0.70 16 35 H 0.10 0.95 7.87 -2.39 -0.02 0.93 16 36 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.10 0.99 8.02 -2.39 -0.02 0.97 16 38 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 42 H 0.07 1.66 6.88 -2.39 -0.02 1.64 16 43 H 0.05 0.83 8.13 -2.39 -0.02 0.81 16 44 H 0.40 7.89 6.29 -92.70 -0.58 7.31 16 45 H 0.06 2.82 6.99 -2.39 -0.02 2.80 16 46 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.07 3.87 6.03 -2.38 -0.01 3.85 16 48 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 50 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 51 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 52 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 53 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 54 H 0.10 2.19 5.65 -2.39 -0.01 2.18 16 Total: -1.00 -69.04 408.16 -0.79 -69.83 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.28 Total: 24.08 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 6.70 Total: 6.87 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -8.13 Total: -109.37 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -1.67 Total: -37.00 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -69.04 -0.79 -69.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925593677.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.283 kcal (2) G-P(sol) polarization free energy of solvation -69.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds