Wall clock time and date at job start Tue Mar 31 2020 23:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53003 * 109.46873 * 2 1 4 4 H 1.09003 * 109.46584 * 177.26395 * 3 2 1 5 5 C 1.50693 * 109.47309 * 297.26438 * 3 2 1 6 6 O 1.21290 * 119.99773 * 100.00279 * 5 3 2 7 7 N 1.34770 * 120.00484 * 280.00341 * 5 3 2 8 8 C 1.47159 * 120.98514 * 359.97438 * 7 5 3 9 9 C 1.53295 * 108.37427 * 129.43103 * 8 7 5 10 10 O 1.42965 * 109.22808 * 52.35173 * 9 8 7 11 11 C 1.42899 * 114.20847 * 297.50600 * 10 9 8 12 12 C 1.52987 * 109.55970 * 302.52595 * 11 10 9 13 13 C 1.53193 * 109.34992 * 300.95984 * 12 11 10 14 14 N 1.46937 * 108.77441 * 305.42687 * 13 12 11 15 15 C 1.36929 * 120.64461 * 233.64961 * 14 13 12 16 16 H 1.08007 * 120.00071 * 26.19275 * 15 14 13 17 17 C 1.38816 * 120.00419 * 206.19454 * 15 14 13 18 18 N 1.31611 * 119.99639 * 32.25654 * 17 15 14 19 19 Si 1.86790 * 119.99990 * 212.25954 * 17 15 14 20 20 H 1.48500 * 109.47296 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47781 * 299.99780 * 19 17 15 22 22 H 1.48507 * 109.47295 * 59.99987 * 19 17 15 23 23 C 1.46928 * 118.71210 * 53.92853 * 14 13 12 24 24 C 1.52993 * 109.54957 * 182.23019 * 11 10 9 25 25 C 1.47157 * 120.99212 * 180.02562 * 7 5 3 26 26 N 1.46899 * 109.47036 * 57.27050 * 3 2 1 27 27 C 1.46891 * 111.00523 * 56.91381 * 26 3 2 28 28 C 1.46900 * 110.99902 * 180.87012 * 26 3 2 29 29 H 1.08995 * 109.46709 * 185.44130 * 1 2 3 30 30 H 1.08998 * 109.46935 * 305.44797 * 1 2 3 31 31 H 1.09004 * 109.46957 * 65.44323 * 1 2 3 32 32 H 1.08991 * 109.46918 * 240.00296 * 2 1 3 33 33 H 1.08997 * 109.46781 * 119.99966 * 2 1 3 34 34 H 1.09000 * 109.68226 * 249.15296 * 8 7 5 35 35 H 1.09001 * 109.68308 * 9.70699 * 8 7 5 36 36 H 1.08997 * 109.51282 * 172.28142 * 9 8 7 37 37 H 1.09003 * 109.51020 * 292.37801 * 9 8 7 38 38 H 1.08997 * 109.49188 * 180.99607 * 12 11 10 39 39 H 1.09006 * 109.51112 * 60.93378 * 12 11 10 40 40 H 1.09002 * 109.58752 * 185.64298 * 13 12 11 41 41 H 1.09001 * 109.70364 * 65.28758 * 13 12 11 42 42 H 0.97002 * 120.00188 * 5.54380 * 18 17 15 43 43 H 1.08998 * 109.59112 * 65.85079 * 23 14 13 44 44 H 1.08998 * 109.58945 * 186.28252 * 23 14 13 45 45 H 1.08999 * 109.49395 * 179.00478 * 24 11 10 46 46 H 1.09004 * 109.48856 * 299.04835 * 24 11 10 47 47 H 1.08990 * 109.68131 * 110.71979 * 25 7 5 48 48 H 1.08998 * 109.67175 * 350.17751 * 25 7 5 49 49 H 1.09005 * 109.47517 * 54.02791 * 27 26 3 50 50 H 1.08999 * 109.47707 * 174.02644 * 27 26 3 51 51 H 1.09008 * 109.47312 * 294.02787 * 27 26 3 52 52 H 1.08998 * 109.47001 * 56.04483 * 28 26 3 53 53 H 1.09005 * 109.46932 * 176.04109 * 28 26 3 54 54 H 1.08999 * 109.47092 * 296.04349 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 3.1290 1.4429 0.0491 5 6 1.5939 2.1331 -1.2629 6 8 0.6310 2.8704 -1.2431 7 7 2.2647 1.9315 -2.4143 8 6 3.4360 1.0421 -2.4629 9 6 3.2452 0.0544 -3.6196 10 8 2.9505 0.7808 -4.8152 11 6 1.7368 1.5330 -4.7597 12 6 0.5680 0.5971 -4.4461 13 6 0.4754 -0.4805 -5.5311 14 7 0.3889 0.1755 -6.8430 15 6 -0.6291 -0.1253 -7.7080 16 1 -1.5723 -0.4882 -7.3267 17 6 -0.4490 0.0359 -9.0749 18 7 0.7397 -0.1503 -9.6084 19 14 -1.8935 0.5171 -10.1570 20 1 -1.4413 0.6248 -11.5673 21 1 -2.9548 -0.5164 -10.0546 22 1 -2.4328 1.8264 -9.7093 23 6 1.4193 1.1561 -7.2112 24 6 1.4982 2.2199 -6.1058 25 6 1.8482 2.5951 -3.6600 26 7 1.4972 2.1538 1.1651 27 6 1.8515 1.4661 2.4138 28 6 1.9501 3.5511 1.1868 29 1 -0.3632 -1.0230 0.0974 30 1 -0.3633 0.5960 0.8372 31 1 -0.3633 0.4271 -0.9348 32 1 1.8934 -0.5137 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 4.3379 1.6315 -2.6284 35 1 3.5213 0.4956 -1.5237 36 1 4.1591 -0.5227 -3.7601 37 1 2.4203 -0.6201 -3.3899 38 1 -0.3595 1.1690 -4.4215 39 1 0.7298 0.1246 -3.4772 40 1 -0.4143 -1.0886 -5.3672 41 1 1.3621 -1.1136 -5.4968 42 1 1.4709 -0.4778 -9.0616 43 1 2.3822 0.6549 -7.3093 44 1 1.1529 1.6285 -8.1566 45 1 0.5633 2.7791 -6.0682 46 1 2.3217 2.9022 -6.3169 47 1 2.5900 3.3414 -3.9440 48 1 0.8808 3.0755 -3.5141 49 1 2.9315 1.3247 2.4570 50 1 1.5297 2.0676 3.2639 51 1 1.3564 0.4955 2.4473 52 1 1.6749 4.0368 0.2507 53 1 1.4782 4.0730 2.0194 54 1 3.0331 3.5802 1.3067 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949191663.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:06 Heat of formation + Delta-G solvation = -57.160762 kcal Electronic energy + Delta-G solvation = -33025.833424 eV Core-core repulsion = 28998.111150 eV Total energy + Delta-G solvation = -4027.722273 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.09589 -40.59313 -38.26991 -37.84057 -35.89913 -34.85266 -33.99559 -32.90948 -31.63524 -30.08844 -29.49697 -28.30711 -27.66419 -25.83295 -24.77455 -24.20296 -23.97216 -23.14972 -21.81859 -20.58018 -19.74629 -19.42762 -18.37862 -17.69529 -17.04518 -16.87859 -16.60091 -16.38488 -16.17379 -15.84299 -15.65638 -15.50777 -15.36318 -15.25432 -15.08033 -14.85324 -14.39866 -14.12493 -13.85711 -13.73526 -13.63913 -13.33557 -13.24021 -13.16198 -13.07039 -12.89103 -12.62436 -12.55181 -12.51713 -12.35510 -12.12043 -12.07839 -12.00339 -11.94374 -11.87670 -11.83861 -11.44757 -11.29560 -10.90496 -10.63673 -10.39531 -9.57794 -9.27611 -8.94478 -8.31736 -5.34993 1.53527 1.57426 1.64273 1.72798 1.84185 2.63931 2.71826 2.91121 3.14982 3.31462 3.47030 3.64832 3.70921 3.80501 3.81092 3.91433 3.96432 4.10638 4.20582 4.21704 4.27769 4.33282 4.38488 4.40951 4.49664 4.54728 4.57749 4.58584 4.61321 4.65100 4.70820 4.75394 4.78188 4.83000 4.87469 4.93998 4.98466 5.00444 5.01407 5.08409 5.12409 5.12917 5.16121 5.27814 5.43888 5.45490 5.84099 5.87840 6.05775 6.25094 6.33023 6.36075 7.04246 7.11762 7.78053 8.24036 8.94568 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021697 B = 0.003025 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.212389 B = 9253.380897 C = 9462.226159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C 0.073 3.927 4 H 0.085 0.915 5 C 0.519 3.481 6 O -0.560 6.560 7 N -0.613 5.613 8 C 0.073 3.927 9 C 0.035 3.965 10 O -0.379 6.379 11 C 0.128 3.872 12 C -0.134 4.134 13 C 0.156 3.844 14 N -0.614 5.614 15 C -0.367 4.367 16 H 0.045 0.955 17 C -0.067 4.067 18 N -0.927 5.927 19 Si 1.107 2.893 20 H -0.289 1.289 21 H -0.277 1.277 22 H -0.282 1.282 23 C 0.171 3.829 24 C -0.114 4.114 25 C 0.101 3.899 26 N -0.543 5.543 27 C 0.023 3.977 28 C 0.024 3.976 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.019 0.981 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.041 0.959 41 H 0.018 0.982 42 H 0.253 0.747 43 H 0.009 0.991 44 H 0.042 0.958 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.080 0.920 49 H 0.041 0.959 50 H 0.076 0.924 51 H 0.080 0.920 52 H 0.050 0.950 53 H 0.077 0.923 54 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.403 2.324 25.289 27.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.039 4.039 4 H 0.102 0.898 5 C 0.308 3.692 6 O -0.437 6.437 7 N -0.347 5.347 8 C -0.048 4.048 9 C -0.042 4.042 10 O -0.298 6.298 11 C 0.088 3.912 12 C -0.173 4.173 13 C 0.030 3.970 14 N -0.338 5.338 15 C -0.496 4.496 16 H 0.063 0.937 17 C -0.265 4.265 18 N -0.568 5.568 19 Si 0.931 3.069 20 H -0.215 1.215 21 H -0.203 1.203 22 H -0.208 1.208 23 C 0.045 3.955 24 C -0.154 4.154 25 C -0.023 4.023 26 N -0.268 5.268 27 C -0.124 4.124 28 C -0.124 4.124 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.039 0.961 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.140 0.860 36 H 0.146 0.854 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.062 0.938 43 H 0.027 0.973 44 H 0.061 0.939 45 H 0.087 0.913 46 H 0.100 0.900 47 H 0.102 0.898 48 H 0.098 0.902 49 H 0.059 0.941 50 H 0.095 0.905 51 H 0.099 0.901 52 H 0.069 0.931 53 H 0.096 0.904 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.031 3.094 23.579 25.101 hybrid contribution 0.917 -0.434 1.308 1.655 sum 8.947 2.660 24.887 26.580 Atomic orbital electron populations 1.21623 0.95689 1.01449 1.01229 1.21659 0.96761 0.92096 1.04418 1.21728 0.98687 0.95256 0.88208 0.89768 1.20991 0.82167 0.80980 0.85060 1.90681 1.28320 1.39088 1.85622 1.48238 1.31021 1.47297 1.08141 1.22726 0.87952 0.92877 1.01294 1.23212 1.02693 0.93705 0.84566 1.88028 1.40139 1.64213 1.37460 1.21459 0.84525 0.90686 0.94520 1.22273 0.98021 0.98446 0.98552 1.20808 0.97750 0.93130 0.85290 1.44351 1.29572 1.44680 1.15243 1.20106 0.92266 1.47332 0.89917 0.93735 1.27057 1.03823 0.99339 0.96284 1.70903 1.03938 1.44427 1.37496 0.82980 0.72586 0.77069 0.74248 1.21522 1.20256 1.20807 1.20670 0.89970 0.89308 0.95563 1.21991 1.01680 0.97987 0.93726 1.22119 1.01907 0.94890 0.83363 1.61641 1.60439 1.02542 1.02163 1.22524 0.99623 1.00140 0.90085 1.22416 0.98100 0.89098 1.02816 0.91799 0.91722 0.96126 0.90423 0.87744 0.88936 0.86016 0.85410 0.92906 0.93128 0.90923 0.94064 0.96413 0.93786 0.97254 0.93945 0.91324 0.90023 0.89836 0.90181 0.94061 0.90516 0.90120 0.93126 0.90401 0.94619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.41 71.99 0.68 -2.21 16 2 C -0.11 -1.62 4.85 30.60 0.15 -1.47 16 3 C 0.07 1.25 1.30 44.17 0.06 1.31 16 4 H 0.08 1.03 6.88 -2.39 -0.02 1.02 16 5 C 0.52 12.99 5.10 87.66 0.45 13.44 16 6 O -0.56 -18.91 14.31 -3.06 -0.04 -18.96 16 7 N -0.61 -14.29 2.52 -817.34 -2.06 -16.36 16 8 C 0.07 1.19 6.03 86.35 0.52 1.71 16 9 C 0.04 0.75 6.60 72.08 0.48 1.22 16 10 O -0.38 -11.93 9.00 -148.98 -1.34 -13.27 16 11 C 0.13 4.24 0.68 -10.70 -0.01 4.23 16 12 C -0.13 -4.84 4.33 30.65 0.13 -4.71 16 13 C 0.16 6.84 6.28 86.36 0.54 7.39 16 14 N -0.61 -32.05 2.85 -698.22 -1.99 -34.04 16 15 C -0.37 -21.32 9.42 84.04 0.79 -20.53 16 16 H 0.04 2.63 8.00 -2.91 -0.02 2.60 16 17 C -0.07 -3.91 4.47 84.86 0.38 -3.53 16 18 N -0.93 -57.45 12.49 21.65 0.27 -57.18 16 19 Si 1.11 52.11 30.02 68.60 2.06 54.17 16 20 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 23 C 0.17 8.32 4.67 86.51 0.40 8.73 16 24 C -0.11 -4.37 5.12 30.80 0.16 -4.22 16 25 C 0.10 2.86 5.30 86.35 0.46 3.32 16 26 N -0.54 -9.80 3.64 -927.74 -3.38 -13.18 16 27 C 0.02 0.26 8.87 127.69 1.13 1.39 16 28 C 0.02 0.43 9.19 127.69 1.17 1.61 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.40 7.10 -2.39 -0.02 1.38 16 31 H 0.02 0.54 7.40 -2.38 -0.02 0.53 16 32 H 0.08 1.05 6.88 -2.39 -0.02 1.03 16 33 H 0.10 0.95 6.65 -2.39 -0.02 0.94 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.12 1.20 4.84 -2.39 -0.01 1.18 16 36 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.05 1.20 6.29 -2.39 -0.02 1.18 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.07 2.33 6.16 -2.38 -0.01 2.31 16 40 H 0.04 1.85 7.93 -2.39 -0.02 1.83 16 41 H 0.02 0.79 7.83 -2.39 -0.02 0.77 16 42 H 0.25 16.11 7.34 -92.71 -0.68 15.42 16 43 H 0.01 0.48 7.73 -2.39 -0.02 0.47 16 44 H 0.04 2.32 6.39 -2.39 -0.02 2.31 16 45 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 46 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 47 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 48 H 0.08 2.61 7.07 -2.39 -0.02 2.59 16 49 H 0.04 0.34 8.12 -2.38 -0.02 0.32 16 50 H 0.08 0.77 8.06 -2.39 -0.02 0.75 16 51 H 0.08 0.79 6.43 -2.38 -0.02 0.77 16 52 H 0.05 1.24 5.94 -2.39 -0.01 1.22 16 53 H 0.08 1.26 8.12 -2.38 -0.02 1.24 16 54 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -75.27 394.08 1.96 -73.31 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.96 Total: 17.86 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 7.49 Total: 7.65 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -7.16 Total: -120.76 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -1.38 Total: -32.23 kcal Atomic # 14 Polarization: 52.11 SS G_CDS: 2.06 Total: 54.17 kcal Total: -75.27 1.96 -73.31 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949191663.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.145 kcal (2) G-P(sol) polarization free energy of solvation -75.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds