Wall clock time and date at job start Tue Mar 31 2020 23:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47037 * 2 1 4 4 H 1.08992 * 109.47068 * 174.00791 * 3 2 1 5 5 C 1.50699 * 109.47167 * 54.00553 * 3 2 1 6 6 O 1.21282 * 119.99886 * 247.47756 * 5 3 2 7 7 N 1.34773 * 120.00293 * 67.47737 * 5 3 2 8 8 C 1.46918 * 120.64619 * 183.18779 * 7 5 3 9 9 C 1.53193 * 108.77911 * 126.30282 * 8 7 5 10 10 C 1.52993 * 109.35427 * 54.56530 * 9 8 7 11 11 C 1.52985 * 109.63775 * 298.81007 * 10 9 8 12 12 C 1.46935 * 120.64025 * 3.16602 * 7 5 3 13 13 C 1.53262 * 109.35873 * 178.87611 * 10 9 8 14 14 N 1.47156 * 108.39893 * 187.87817 * 13 10 9 15 15 C 1.36936 * 120.99274 * 230.50743 * 14 13 10 16 16 H 1.07992 * 120.00407 * 150.92655 * 15 14 13 17 17 C 1.38818 * 119.99559 * 330.92399 * 15 14 13 18 18 N 1.31619 * 119.99971 * 346.21623 * 17 15 14 19 19 Si 1.86799 * 119.99636 * 166.21201 * 17 15 14 20 20 H 1.48504 * 109.47321 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46962 * 120.00040 * 19 17 15 22 22 H 1.48500 * 109.47231 * 239.99912 * 19 17 15 23 23 C 1.47154 * 118.02084 * 50.49597 * 14 13 10 24 24 C 1.53298 * 108.37661 * 309.40453 * 23 14 13 25 25 O 1.42895 * 109.55576 * 59.07889 * 10 9 8 26 26 N 1.46903 * 109.47000 * 294.00324 * 3 2 1 27 27 C 1.46896 * 110.99943 * 188.10184 * 26 3 2 28 28 C 1.46899 * 111.00435 * 312.06295 * 26 3 2 29 29 H 1.09002 * 109.47482 * 182.20282 * 1 2 3 30 30 H 1.09001 * 109.47129 * 302.20399 * 1 2 3 31 31 H 1.09003 * 109.47424 * 62.20308 * 1 2 3 32 32 H 1.09000 * 109.46945 * 239.99856 * 2 1 3 33 33 H 1.08997 * 109.46580 * 119.99808 * 2 1 3 34 34 H 1.08999 * 109.59205 * 6.51429 * 8 7 5 35 35 H 1.08994 * 109.58773 * 246.08632 * 8 7 5 36 36 H 1.09002 * 109.48790 * 294.60493 * 9 8 7 37 37 H 1.08999 * 109.49281 * 174.53188 * 9 8 7 38 38 H 1.09004 * 109.48942 * 181.16098 * 11 10 9 39 39 H 1.09000 * 109.49386 * 301.23341 * 11 10 9 40 40 H 1.08999 * 109.58679 * 353.48743 * 12 7 5 41 41 H 1.08999 * 109.59063 * 113.77360 * 12 7 5 42 42 H 1.09000 * 109.68053 * 307.60867 * 13 10 9 43 43 H 1.09001 * 109.67942 * 68.15935 * 13 10 9 44 44 H 0.97002 * 119.99205 * 179.97438 * 18 17 15 45 45 H 1.09002 * 109.68258 * 189.68729 * 23 14 13 46 46 H 1.08997 * 109.69057 * 69.12359 * 23 14 13 47 47 H 1.09007 * 109.51008 * 292.40825 * 24 23 14 48 48 H 1.09005 * 109.50998 * 172.26889 * 24 23 14 49 49 H 1.09006 * 109.46881 * 64.01686 * 27 26 3 50 50 H 1.08996 * 109.47408 * 184.01156 * 27 26 3 51 51 H 1.09002 * 109.47631 * 304.02080 * 27 26 3 52 52 H 1.09001 * 109.46889 * 66.12841 * 28 26 3 53 53 H 1.08996 * 109.47374 * 186.13189 * 28 26 3 54 54 H 1.09000 * 109.46968 * 306.13574 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1247 1.4444 0.1073 5 6 1.4202 2.1945 1.1495 6 8 0.6314 3.0900 0.9334 7 7 1.7423 1.8718 2.4178 8 6 1.0948 2.5479 3.5501 9 6 0.5012 1.4880 4.4834 10 6 1.5948 0.4961 4.8847 11 6 2.1360 -0.2049 3.6373 12 6 2.7476 0.8366 2.6948 13 6 1.0076 -0.5481 5.8407 14 7 2.1095 -1.3731 6.3610 15 6 2.0462 -2.7404 6.3212 16 1 2.9537 -3.3211 6.2468 17 6 0.8154 -3.3801 6.3765 18 7 -0.2589 -2.7102 6.7363 19 14 0.6840 -5.1917 5.9403 20 1 2.0258 -5.7108 5.5720 21 1 0.1658 -5.9461 7.1097 22 1 -0.2438 -5.3585 4.7929 23 6 3.2815 -0.6850 6.9251 24 6 3.7588 0.3642 5.9145 25 8 2.6559 1.1934 5.5402 26 7 1.6720 2.0920 -1.2653 27 6 2.3069 3.4113 -1.3839 28 6 2.0109 1.2396 -2.4127 29 1 -0.3634 -1.0269 0.0395 30 1 -0.3633 0.5477 0.8696 31 1 -0.3634 0.4792 -0.9091 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.3003 3.1971 3.1823 35 1 1.8320 3.1402 4.0921 36 1 -0.2997 0.9575 3.9684 37 1 0.1031 1.9710 5.3757 38 1 2.9003 -0.9257 3.9279 39 1 1.3224 -0.7222 3.1288 40 1 3.0440 0.3562 1.7624 41 1 3.6198 1.2907 3.1653 42 1 0.5027 -0.0469 6.6665 43 1 0.2984 -1.1788 5.3047 44 1 -1.1189 -3.1572 6.7746 45 1 4.0776 -1.4065 7.1088 46 1 3.0058 -0.1959 7.8594 47 1 4.1551 -0.1356 5.0305 48 1 4.5382 0.9774 6.3669 49 1 3.3896 3.2913 -1.4235 50 1 1.9620 3.8999 -2.2951 51 1 2.0404 4.0218 -0.5210 52 1 1.3924 0.3422 -2.3938 53 1 1.8294 1.7866 -3.3378 54 1 3.0622 0.9573 -2.3576 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949395354.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:42 Heat of formation + Delta-G solvation = -52.461838 kcal Electronic energy + Delta-G solvation = -33200.371270 eV Core-core repulsion = 29172.852757 eV Total energy + Delta-G solvation = -4027.518513 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.88682 -40.58887 -38.31416 -37.29138 -36.14475 -34.43709 -33.43713 -33.16356 -32.06091 -30.01221 -28.93444 -28.28533 -27.94045 -25.38736 -24.79421 -24.46964 -23.97975 -22.94865 -21.68509 -20.60765 -19.58262 -18.77558 -18.20305 -17.47542 -17.18893 -16.87293 -16.48235 -16.28063 -16.11124 -15.81956 -15.48367 -15.45074 -15.20900 -15.19244 -14.79845 -14.57215 -14.37706 -14.02788 -13.84700 -13.72821 -13.45510 -13.22189 -13.21472 -13.14231 -12.99549 -12.79338 -12.74274 -12.49890 -12.40385 -12.31065 -12.24445 -12.16636 -12.04041 -11.92474 -11.87105 -11.65325 -11.62120 -10.96055 -10.68798 -10.59908 -10.42098 -9.60137 -9.22758 -8.64189 -7.86981 -5.37339 1.45495 1.48037 1.57553 1.64567 1.94630 2.48473 2.92172 2.97976 3.27650 3.42527 3.54707 3.76234 3.85054 3.96778 4.00686 4.03152 4.10929 4.25526 4.32241 4.35056 4.38421 4.44862 4.46044 4.52354 4.55312 4.57815 4.62718 4.67445 4.73718 4.76728 4.84891 4.86059 4.89330 4.96953 5.00513 5.01302 5.05448 5.08912 5.10260 5.11696 5.20670 5.30420 5.33146 5.42206 5.52985 5.60596 5.64854 5.94849 6.11846 6.33993 6.47673 6.48606 7.10640 7.23289 7.79127 8.34537 9.17975 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013940 B = 0.003792 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.185540 B = 7382.370496 C = 8396.229157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.072 3.928 4 H 0.080 0.920 5 C 0.521 3.479 6 O -0.564 6.564 7 N -0.606 5.606 8 C 0.130 3.870 9 C -0.110 4.110 10 C 0.109 3.891 11 C -0.136 4.136 12 C 0.115 3.885 13 C 0.171 3.829 14 N -0.608 5.608 15 C -0.257 4.257 16 H 0.073 0.927 17 C -0.047 4.047 18 N -0.937 5.937 19 Si 0.964 3.036 20 H -0.261 1.261 21 H -0.297 1.297 22 H -0.291 1.291 23 C 0.103 3.897 24 C 0.053 3.947 25 O -0.383 6.383 26 N -0.543 5.543 27 C 0.027 3.973 28 C 0.022 3.978 29 H 0.060 0.940 30 H 0.025 0.975 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.107 0.893 41 H 0.080 0.920 42 H -0.013 1.013 43 H 0.059 0.941 44 H 0.248 0.752 45 H 0.070 0.930 46 H 0.009 0.991 47 H 0.061 0.939 48 H 0.114 0.886 49 H 0.035 0.965 50 H 0.078 0.922 51 H 0.052 0.948 52 H 0.078 0.922 53 H 0.078 0.922 54 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.604 7.776 -15.760 20.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C -0.040 4.040 4 H 0.098 0.902 5 C 0.310 3.690 6 O -0.442 6.442 7 N -0.339 5.339 8 C 0.007 3.993 9 C -0.149 4.149 10 C 0.068 3.932 11 C -0.175 4.175 12 C -0.007 4.007 13 C 0.044 3.956 14 N -0.332 5.332 15 C -0.387 4.387 16 H 0.090 0.910 17 C -0.243 4.243 18 N -0.583 5.583 19 Si 0.792 3.208 20 H -0.185 1.185 21 H -0.224 1.224 22 H -0.217 1.217 23 C -0.022 4.022 24 C -0.025 4.025 25 O -0.303 6.303 26 N -0.268 5.268 27 C -0.121 4.121 28 C -0.125 4.125 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.125 0.875 41 H 0.098 0.902 42 H 0.005 0.995 43 H 0.077 0.923 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.027 0.973 47 H 0.079 0.921 48 H 0.131 0.869 49 H 0.053 0.947 50 H 0.097 0.903 51 H 0.071 0.929 52 H 0.096 0.904 53 H 0.097 0.903 54 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.548 8.445 -15.819 19.865 hybrid contribution -0.009 -1.406 0.737 1.587 sum 8.540 7.039 -15.082 18.707 Atomic orbital electron populations 1.21626 0.95618 1.01198 1.01371 1.21852 0.96842 0.92608 1.04605 1.21659 0.98621 0.94794 0.88895 0.90233 1.20830 0.81308 0.83016 0.83840 1.90636 1.36456 1.32554 1.84591 1.48164 1.41295 1.39227 1.05256 1.21340 0.97703 0.94126 0.86109 1.21761 0.96589 0.96923 0.99600 1.21859 0.87835 0.91830 0.91676 1.22174 1.01750 0.98076 0.95481 1.21910 0.90456 0.88069 1.00282 1.21100 0.90081 0.90981 0.93389 1.44283 1.17702 1.01984 1.69263 1.19528 0.92757 0.82553 1.43845 0.90961 1.25836 0.96485 1.01526 1.00420 1.70179 0.99322 1.37150 1.51646 0.85259 0.78061 0.80551 0.76921 1.18540 1.22409 1.21742 1.21799 0.90563 0.95102 0.94758 1.23075 0.88537 0.93237 0.97646 1.87802 1.29187 1.35371 1.77899 1.61578 1.60196 1.03938 1.01089 1.22395 0.96381 0.90407 1.02886 1.22545 0.99737 0.97876 0.92364 0.92134 0.95580 0.91897 0.87981 0.90135 0.90190 0.90430 0.91487 0.90565 0.90030 0.92162 0.87524 0.90170 0.99482 0.92292 0.94240 0.91148 0.97349 0.92099 0.86860 0.94663 0.90318 0.92904 0.90364 0.90322 0.94193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.38 71.98 0.68 -2.70 16 2 C -0.12 -2.36 4.85 30.60 0.15 -2.21 16 3 C 0.07 1.53 1.36 44.17 0.06 1.59 16 4 H 0.08 1.41 7.36 -2.39 -0.02 1.39 16 5 C 0.52 14.65 4.95 87.66 0.43 15.09 16 6 O -0.56 -19.81 14.33 -3.03 -0.04 -19.86 16 7 N -0.61 -16.41 2.97 -818.91 -2.43 -18.85 16 8 C 0.13 3.80 6.19 86.36 0.53 4.33 16 9 C -0.11 -3.64 5.10 30.66 0.16 -3.48 16 10 C 0.11 3.90 0.68 -10.71 -0.01 3.89 16 11 C -0.14 -4.23 4.17 30.65 0.13 -4.10 16 12 C 0.11 2.73 5.36 86.36 0.46 3.19 16 13 C 0.17 8.04 4.06 86.34 0.35 8.39 16 14 N -0.61 -29.11 2.54 -697.59 -1.77 -30.88 16 15 C -0.26 -13.37 9.64 84.04 0.81 -12.56 16 16 H 0.07 3.62 7.87 -2.91 -0.02 3.59 16 17 C -0.05 -2.54 5.00 84.86 0.42 -2.12 16 18 N -0.94 -54.52 11.16 21.65 0.24 -54.28 16 19 Si 0.96 43.28 29.58 68.60 2.03 45.30 16 20 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 21 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 23 C 0.10 4.04 6.73 86.35 0.58 4.63 16 24 C 0.05 1.61 6.60 72.08 0.48 2.08 16 25 O -0.38 -13.08 9.01 -148.98 -1.34 -14.42 16 26 N -0.54 -11.43 4.09 -927.75 -3.79 -15.23 16 27 C 0.03 0.54 9.23 127.69 1.18 1.72 16 28 C 0.02 0.32 8.66 127.69 1.11 1.42 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.02 0.76 6.96 -2.39 -0.02 0.74 16 31 H 0.06 1.52 7.54 -2.39 -0.02 1.50 16 32 H 0.10 1.49 6.07 -2.39 -0.01 1.47 16 33 H 0.08 1.58 5.35 -2.39 -0.01 1.57 16 34 H 0.08 2.46 7.02 -2.39 -0.02 2.45 16 35 H 0.08 2.19 7.83 -2.39 -0.02 2.18 16 36 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.08 2.69 6.15 -2.38 -0.01 2.68 16 39 H 0.06 2.02 7.90 -2.39 -0.02 2.00 16 40 H 0.11 2.00 4.28 -2.39 -0.01 1.99 16 41 H 0.08 1.80 7.83 -2.39 -0.02 1.78 16 42 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 43 H 0.06 3.14 6.26 -2.39 -0.01 3.13 16 44 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 45 H 0.07 2.57 7.96 -2.39 -0.02 2.55 16 46 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 47 H 0.06 1.72 6.29 -2.38 -0.01 1.70 16 48 H 0.11 2.74 8.14 -2.38 -0.02 2.72 16 49 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 50 H 0.08 1.37 8.12 -2.39 -0.02 1.35 16 51 H 0.05 1.33 6.28 -2.39 -0.01 1.32 16 52 H 0.08 1.07 6.08 -2.39 -0.01 1.06 16 53 H 0.08 0.98 8.06 -2.39 -0.02 0.96 16 54 H 0.04 0.47 8.12 -2.39 -0.02 0.45 16 Total: -1.00 -67.54 391.58 1.28 -66.26 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.88 Total: 22.78 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 7.52 Total: 19.17 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -7.76 Total: -119.23 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -1.39 Total: -34.28 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -67.54 1.28 -66.26 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949395354.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.795 kcal (2) G-P(sol) polarization free energy of solvation -67.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds