Wall clock time and date at job start Wed Apr 1 2020 00:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46815 * 2 1 4 4 N 1.46904 * 109.46984 * 119.99505 * 2 1 3 5 5 C 1.47015 * 110.99903 * 56.04770 * 4 2 1 6 6 C 1.53095 * 109.25739 * 177.60628 * 5 4 2 7 7 O 1.43020 * 109.29124 * 56.82758 * 6 5 4 8 8 C 1.43015 * 113.73974 * 301.39847 * 7 6 5 9 9 H 1.09009 * 109.46928 * 298.66580 * 8 7 6 10 10 C 1.50697 * 109.50539 * 178.56037 * 8 7 6 11 11 O 1.21281 * 120.00272 * 355.17361 * 10 8 7 12 12 N 1.34777 * 119.99475 * 175.17452 * 10 8 7 13 13 C 1.46508 * 119.99614 * 179.97438 * 12 10 8 14 14 H 1.08993 * 110.88504 * 328.88311 * 13 12 10 15 15 C 1.54909 * 111.00226 * 92.80750 * 13 12 10 16 16 N 1.47420 * 104.83609 * 81.05901 * 15 13 12 17 17 C 1.36934 * 125.65180 * 204.16720 * 16 15 13 18 18 H 1.07997 * 120.00327 * 179.97438 * 17 16 15 19 19 C 1.38804 * 119.99982 * 359.95856 * 17 16 15 20 20 N 1.31622 * 120.00057 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00307 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46876 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47249 * 119.99692 * 21 19 17 24 24 H 1.48499 * 109.47138 * 239.99739 * 21 19 17 25 25 C 1.47024 * 108.70113 * 24.13312 * 16 15 13 26 26 C 1.54323 * 107.27110 * 358.93315 * 25 16 15 27 27 C 1.53000 * 110.72439 * 219.44454 * 26 25 16 28 28 C 1.53006 * 110.71778 * 96.17392 * 26 25 16 29 29 C 1.47016 * 110.99833 * 292.41474 * 4 2 1 30 30 H 1.09000 * 109.46579 * 60.00443 * 1 2 3 31 31 H 1.08997 * 109.46810 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47237 * 300.00394 * 1 2 3 33 33 H 1.08991 * 109.47237 * 239.99606 * 2 1 3 34 34 H 1.09004 * 109.46969 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47185 * 299.99186 * 3 2 1 36 36 H 1.08991 * 109.47540 * 59.99792 * 3 2 1 37 37 H 1.08994 * 109.50352 * 57.67129 * 5 4 2 38 38 H 1.09001 * 109.54105 * 297.56723 * 5 4 2 39 39 H 1.09002 * 109.50646 * 176.78576 * 6 5 4 40 40 H 1.09003 * 109.50955 * 296.87129 * 6 5 4 41 41 H 0.96998 * 120.00178 * 359.97438 * 12 10 8 42 42 H 1.08997 * 110.36811 * 199.90587 * 15 13 12 43 43 H 1.09008 * 110.36355 * 322.22199 * 15 13 12 44 44 H 0.97005 * 120.00016 * 180.02562 * 20 19 17 45 45 H 1.09005 * 109.87949 * 239.52068 * 25 16 15 46 46 H 1.08992 * 110.01465 * 118.42727 * 25 16 15 47 47 H 1.09001 * 109.47013 * 173.52473 * 27 26 25 48 48 H 1.09000 * 109.47342 * 293.52716 * 27 26 25 49 49 H 1.09006 * 109.46552 * 53.52528 * 27 26 25 50 50 H 1.08996 * 109.47138 * 306.47551 * 28 26 25 51 51 H 1.08998 * 109.47124 * 66.48054 * 28 26 25 52 52 H 1.08998 * 109.47092 * 186.47828 * 28 26 25 53 53 H 1.09000 * 109.50473 * 302.32301 * 29 4 2 54 54 H 1.09002 * 109.50845 * 62.45887 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4726 -2.0545 1.2818 6 6 2.0537 -2.7586 2.5108 7 8 1.7629 -1.9868 3.6792 8 6 2.2807 -0.6545 3.6327 9 1 3.3673 -0.6896 3.5530 10 6 1.8909 0.0809 4.8890 11 8 1.1619 -0.4491 5.7005 12 7 2.3525 1.3276 5.1106 13 6 1.9732 2.0428 6.3317 14 1 0.9778 1.7463 6.6623 15 6 3.0200 1.8224 7.4521 16 7 4.1051 2.7724 7.1471 17 6 5.4101 2.6473 7.5426 18 1 6.1328 3.4007 7.2663 19 6 5.8041 1.5521 8.2989 20 7 4.9232 0.6342 8.6364 21 14 7.5845 1.3809 8.8379 22 1 8.3680 2.5367 8.3325 23 1 7.6517 1.3473 10.3210 24 1 8.1492 0.1223 8.2882 25 6 3.5544 3.8762 6.3471 26 6 2.0565 3.5783 6.1254 27 6 1.6336 3.9574 4.7047 28 6 1.1999 4.3107 7.1602 29 6 1.7018 0.0710 2.4151 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 1.7414 -2.6095 0.3832 38 1 0.3871 -2.0067 1.3690 39 1 1.6076 -3.7484 2.6080 40 1 3.1335 -2.8556 2.3981 41 1 2.9359 1.7513 4.4618 42 1 2.5848 2.0436 8.4267 43 1 3.3935 0.7987 7.4262 44 1 5.1985 -0.1310 9.1653 45 1 4.0676 3.9302 5.3870 46 1 3.6696 4.8186 6.8824 47 1 0.6069 3.6342 4.5328 48 1 1.6996 5.0385 4.5821 49 1 2.2932 3.4695 3.9870 50 1 1.5557 4.0703 8.1621 51 1 1.2730 5.3859 6.9970 52 1 0.1608 3.9977 7.0589 53 1 2.1382 1.0673 2.3437 54 1 0.6201 0.1533 2.5208 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974965912.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:32 Heat of formation + Delta-G solvation = -65.874357 kcal Electronic energy + Delta-G solvation = -32486.351071 eV Core-core repulsion = 28458.250947 eV Total energy + Delta-G solvation = -4028.100123 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.67241 -40.62234 -39.24922 -37.73510 -35.67178 -34.64517 -32.80579 -32.61418 -32.52770 -29.83036 -28.35253 -28.09832 -27.64083 -27.30797 -25.80335 -24.86473 -22.97130 -22.17208 -21.36697 -20.51442 -20.13566 -18.70658 -18.53426 -17.87547 -17.31741 -16.92713 -16.65577 -16.29098 -15.90210 -15.86179 -15.58298 -15.55666 -15.26073 -15.04973 -14.85380 -14.62639 -14.17018 -14.04850 -13.84806 -13.71526 -13.63224 -13.05003 -13.02107 -12.99902 -12.95066 -12.84172 -12.70844 -12.62089 -12.55908 -12.32899 -12.04448 -12.03301 -11.91786 -11.77395 -11.74139 -11.48707 -11.45102 -11.35020 -10.86294 -10.78014 -10.66446 -9.97901 -9.37601 -8.83628 -7.74453 -5.19625 1.45550 1.46234 1.53170 1.56716 1.87186 2.49813 2.68822 3.04986 3.35714 3.57582 3.62623 3.69849 3.73668 3.86762 3.94591 3.99015 4.02664 4.09250 4.16045 4.24919 4.37169 4.41276 4.42792 4.50135 4.52357 4.62857 4.73305 4.74446 4.77224 4.84187 4.85153 4.89740 4.90401 4.94527 4.99559 5.04778 5.10520 5.12022 5.21573 5.29957 5.31547 5.34907 5.38412 5.50269 5.54811 5.67103 5.83646 5.87846 6.02485 6.03350 6.31834 6.57888 7.10353 7.25059 7.80594 8.44168 9.26241 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.003701 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.439750 B = 7562.887326 C = 8568.891917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.076 3.924 3 C -0.151 4.151 4 N -0.533 5.533 5 C 0.017 3.983 6 C 0.053 3.947 7 O -0.390 6.390 8 C 0.085 3.915 9 H 0.091 0.909 10 C 0.517 3.483 11 O -0.574 6.574 12 N -0.685 5.685 13 C 0.136 3.864 14 H 0.079 0.921 15 C 0.154 3.846 16 N -0.617 5.617 17 C -0.230 4.230 18 H 0.086 0.914 19 C -0.069 4.069 20 N -0.950 5.950 21 Si 0.976 3.024 22 H -0.261 1.261 23 H -0.297 1.297 24 H -0.296 1.296 25 C 0.138 3.862 26 C -0.073 4.073 27 C -0.123 4.123 28 C -0.127 4.127 29 C 0.040 3.960 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.112 0.888 38 H 0.046 0.954 39 H 0.118 0.882 40 H 0.063 0.937 41 H 0.408 0.592 42 H -0.015 1.015 43 H 0.066 0.934 44 H 0.242 0.758 45 H 0.038 0.962 46 H 0.026 0.974 47 H 0.064 0.936 48 H 0.078 0.922 49 H 0.060 0.940 50 H 0.032 0.968 51 H 0.081 0.919 52 H 0.067 0.933 53 H 0.110 0.890 54 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.072 2.575 -22.250 24.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.031 4.031 3 C -0.208 4.208 4 N -0.258 5.258 5 C -0.110 4.110 6 C -0.023 4.023 7 O -0.309 6.309 8 C 0.023 3.977 9 H 0.109 0.891 10 C 0.302 3.698 11 O -0.452 6.452 12 N -0.336 5.336 13 C 0.030 3.970 14 H 0.097 0.903 15 C 0.028 3.972 16 N -0.343 5.343 17 C -0.359 4.359 18 H 0.104 0.896 19 C -0.261 4.261 20 N -0.600 5.600 21 Si 0.805 3.195 22 H -0.185 1.185 23 H -0.225 1.225 24 H -0.223 1.223 25 C 0.014 3.986 26 C -0.074 4.074 27 C -0.181 4.181 28 C -0.184 4.184 29 C -0.089 4.089 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.130 0.870 38 H 0.064 0.936 39 H 0.135 0.865 40 H 0.082 0.918 41 H 0.245 0.755 42 H 0.003 0.997 43 H 0.084 0.916 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.044 0.956 47 H 0.083 0.917 48 H 0.097 0.903 49 H 0.079 0.921 50 H 0.051 0.949 51 H 0.100 0.900 52 H 0.086 0.914 53 H 0.128 0.872 54 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.035 1.994 -21.464 23.373 hybrid contribution 0.536 -0.323 0.914 1.108 sum -8.498 1.671 -20.550 22.300 Atomic orbital electron populations 1.22466 0.97149 1.02225 1.02591 1.21847 0.93051 0.95911 0.92324 1.21959 1.01950 0.94255 1.02655 1.62533 1.58933 1.02436 1.01905 1.22859 0.98078 0.90194 0.99901 1.23014 1.00991 0.94955 0.83317 1.88095 1.78095 1.23076 1.41613 1.21885 0.99311 0.84272 0.92227 0.89101 1.20559 0.79873 0.81758 0.87579 1.90672 1.38756 1.67321 1.48490 1.45535 1.50355 1.14901 1.22831 1.22205 0.97524 0.92069 0.85196 0.90281 1.21933 0.87080 0.96346 0.91873 1.44684 1.05009 1.23096 1.61515 1.19486 0.85127 1.05040 1.26227 0.89596 1.25618 1.01688 0.97458 1.01369 1.70132 1.33480 1.12994 1.43393 0.85035 0.79912 0.77549 0.77005 1.18529 1.22481 1.22296 1.21650 0.92083 0.90581 0.94321 1.21836 0.95006 0.92029 0.98518 1.21687 1.01450 1.02534 0.92404 1.21693 0.98975 1.00701 0.97050 1.22587 0.99197 0.98535 0.88537 0.90430 0.92377 0.93651 0.88303 0.91838 0.90480 0.92619 0.86958 0.93608 0.86457 0.91843 0.75466 0.99702 0.91554 0.94865 0.94403 0.95593 0.91679 0.90280 0.92068 0.94877 0.90024 0.91391 0.87202 0.93929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.44 8.46 71.98 0.61 -1.83 16 2 C 0.08 1.03 3.11 44.92 0.14 1.17 16 3 C -0.15 -1.84 8.71 71.98 0.63 -1.22 16 4 N -0.53 -9.81 4.78 -869.97 -4.16 -13.98 16 5 C 0.02 0.31 5.08 86.31 0.44 0.74 16 6 C 0.05 1.18 7.01 72.01 0.50 1.69 16 7 O -0.39 -12.96 10.01 -130.02 -1.30 -14.26 16 8 C 0.08 2.60 3.21 29.88 0.10 2.69 16 9 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 10 C 0.52 19.89 7.18 87.66 0.63 20.52 16 11 O -0.57 -27.80 16.15 15.93 0.26 -27.54 16 12 N -0.68 -23.90 4.51 -435.96 -1.97 -25.87 16 13 C 0.14 5.32 2.67 46.38 0.12 5.45 16 14 H 0.08 3.26 7.44 -2.39 -0.02 3.24 16 15 C 0.15 7.96 5.27 86.86 0.46 8.42 16 16 N -0.62 -30.99 3.39 -692.01 -2.35 -33.34 16 17 C -0.23 -12.72 10.27 84.03 0.86 -11.85 16 18 H 0.09 4.50 7.83 -2.91 -0.02 4.47 16 19 C -0.07 -3.98 5.49 84.86 0.47 -3.52 16 20 N -0.95 -59.37 10.09 21.65 0.22 -59.15 16 21 Si 0.98 46.60 29.55 68.60 2.03 48.63 16 22 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 23 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 24 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 25 C 0.14 5.23 6.41 86.73 0.56 5.79 16 26 C -0.07 -2.24 0.80 -50.99 -0.04 -2.28 16 27 C -0.12 -2.64 8.07 71.98 0.58 -2.06 16 28 C -0.13 -3.59 8.41 71.98 0.61 -2.99 16 29 C 0.04 0.89 4.08 86.31 0.35 1.25 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.78 6.40 -2.39 -0.02 0.76 16 32 H 0.04 0.73 6.65 -2.39 -0.02 0.71 16 33 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.05 0.73 6.27 -2.39 -0.01 0.71 16 37 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.05 0.85 6.39 -2.39 -0.02 0.83 16 39 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 41 H 0.41 12.12 7.05 -92.71 -0.65 11.47 16 42 H -0.01 -0.85 7.80 -2.39 -0.02 -0.87 16 43 H 0.07 4.08 5.87 -2.38 -0.01 4.07 16 44 H 0.24 14.91 8.31 -92.70 -0.77 14.14 16 45 H 0.04 1.33 7.77 -2.38 -0.02 1.31 16 46 H 0.03 0.99 7.84 -2.39 -0.02 0.97 16 47 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.06 1.21 6.48 -2.38 -0.02 1.19 16 50 H 0.03 1.13 7.57 -2.39 -0.02 1.11 16 51 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 52 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 53 H 0.11 2.08 5.93 -2.39 -0.01 2.06 16 54 H 0.04 1.03 6.64 -2.39 -0.02 1.02 16 Total: -1.00 -77.17 403.99 -0.04 -77.21 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.23 Total: 26.34 kcal Atomic # 6 Polarization: 14.95 SS G_CDS: 7.01 Total: 21.96 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -8.26 Total: -132.34 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -1.04 Total: -41.80 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -77.17 -0.04 -77.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974965912.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.334 kcal (2) G-P(sol) polarization free energy of solvation -77.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds