Wall clock time and date at job start Wed Apr 1 2020 00:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46896 * 109.47053 * 240.00416 * 2 1 3 5 5 C 1.47017 * 111.00530 * 56.36208 * 4 2 1 6 6 C 1.53094 * 109.26054 * 182.39557 * 5 4 2 7 7 O 1.43017 * 109.25829 * 303.14788 * 6 5 4 8 8 C 1.43019 * 113.73566 * 58.67014 * 7 6 5 9 9 H 1.08999 * 109.50449 * 61.26793 * 8 7 6 10 10 C 1.50700 * 109.54280 * 181.37109 * 8 7 6 11 11 O 1.21285 * 119.99610 * 4.80802 * 10 8 7 12 12 N 1.34775 * 120.00126 * 184.80402 * 10 8 7 13 13 C 1.46502 * 119.99843 * 180.02562 * 12 10 8 14 14 H 1.09006 * 110.88869 * 328.88456 * 13 12 10 15 15 C 1.54909 * 111.00410 * 92.80544 * 13 12 10 16 16 N 1.47428 * 104.82903 * 81.06516 * 15 13 12 17 17 C 1.36938 * 125.64309 * 204.08220 * 16 15 13 18 18 H 1.08007 * 119.99934 * 180.02562 * 17 16 15 19 19 C 1.38812 * 120.00368 * 0.05597 * 17 16 15 20 20 N 1.31619 * 119.99952 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99804 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47044 * 90.00056 * 21 19 17 23 23 H 1.48497 * 109.46720 * 209.99918 * 21 19 17 24 24 H 1.48493 * 109.47053 * 329.99724 * 21 19 17 25 25 C 1.47018 * 108.70493 * 24.12715 * 16 15 13 26 26 C 1.54325 * 107.26997 * 358.94272 * 25 16 15 27 27 C 1.52999 * 110.71834 * 219.44145 * 26 25 16 28 28 C 1.52999 * 110.87260 * 96.24089 * 26 25 16 29 29 C 1.47022 * 111.00137 * 180.02562 * 4 2 1 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 32 32 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 35 35 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 37 37 H 1.09000 * 109.49871 * 302.33080 * 5 4 2 38 38 H 1.09000 * 109.50288 * 62.45245 * 5 4 2 39 39 H 1.09001 * 109.50430 * 183.21746 * 6 5 4 40 40 H 1.09004 * 109.54260 * 63.10636 * 6 5 4 41 41 H 0.96991 * 120.00084 * 0.02562 * 12 10 8 42 42 H 1.09002 * 110.36875 * 199.89985 * 15 13 12 43 43 H 1.08999 * 110.36735 * 322.22570 * 15 13 12 44 44 H 0.97003 * 120.00012 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.88160 * 239.52312 * 25 16 15 46 46 H 1.09004 * 109.88043 * 118.35769 * 25 16 15 47 47 H 1.08998 * 109.47008 * 173.52620 * 27 26 25 48 48 H 1.08998 * 109.47356 * 293.52247 * 27 26 25 49 49 H 1.09000 * 109.47291 * 53.52435 * 27 26 25 50 50 H 1.09004 * 109.47269 * 306.38937 * 28 26 25 51 51 H 1.09000 * 109.47439 * 66.38647 * 28 26 25 52 52 H 1.09001 * 109.47036 * 186.39059 * 28 26 25 53 53 H 1.09002 * 109.49870 * 297.53685 * 29 4 2 54 54 H 1.08991 * 109.50573 * 57.62242 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 1.4785 -0.0779 -2.4205 6 6 1.9649 -0.8650 -3.6402 7 8 3.3946 -0.8999 -3.6396 8 6 3.9555 -1.4927 -2.4651 9 1 3.6244 -2.5282 -2.3865 10 6 5.4596 -1.4503 -2.5482 11 8 6.0000 -0.8838 -3.4745 12 7 6.2042 -2.0417 -1.5931 13 6 7.6664 -2.0000 -1.6736 14 1 7.9981 -1.9810 -2.7118 15 6 8.2315 -0.7909 -0.8872 16 7 8.2500 -1.2312 0.5197 17 6 8.2189 -0.4084 1.6139 18 1 8.2367 -0.8307 2.6078 19 6 8.1639 0.9684 1.4456 20 7 8.1421 1.4830 0.2344 21 14 8.1208 2.0907 2.9384 22 1 9.5083 2.4438 3.3323 23 1 7.3706 3.3283 2.6056 24 1 7.4492 1.3922 4.0636 25 6 8.3084 -2.6999 0.5534 26 6 8.2997 -3.1924 -0.9092 27 6 7.4363 -4.4473 -1.0526 28 6 9.7232 -3.4577 -1.4035 29 6 3.4893 -0.7126 -1.2332 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1299 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 0.3892 -0.0971 -2.3855 38 1 1.8228 0.9539 -2.4920 39 1 1.6130 -0.3795 -4.5505 40 1 1.5759 -1.8823 -3.5965 41 1 5.7720 -2.4950 -0.8525 42 1 9.2412 -0.5572 -1.2248 43 1 7.5810 0.0757 -1.0049 44 1 8.1040 2.4452 0.1169 45 1 7.4403 -3.0933 1.0822 46 1 9.2244 -3.0232 1.0480 47 1 7.3506 -4.7107 -2.1068 48 1 7.8991 -5.2709 -0.5089 49 1 6.4443 -4.2544 -0.6444 50 1 10.3354 -2.5705 -1.2413 51 1 10.1481 -4.2976 -0.8539 52 1 9.7002 -3.6938 -2.4673 53 1 3.8661 0.3089 -1.2856 54 1 3.8675 -1.1942 -0.3315 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974965917.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:36 Heat of formation + Delta-G solvation = -66.381880 kcal Electronic energy + Delta-G solvation = -32641.682288 eV Core-core repulsion = 28613.560157 eV Total energy + Delta-G solvation = -4028.122131 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.65907 -40.63467 -39.26601 -37.72838 -35.67988 -34.67122 -32.93908 -32.60325 -32.38871 -29.90187 -28.41939 -28.15699 -27.68480 -27.29021 -25.50309 -24.94583 -23.25926 -22.20086 -21.29284 -20.52991 -20.11930 -18.70987 -18.43582 -17.92350 -17.21356 -16.99972 -16.63537 -16.41315 -16.08621 -15.84046 -15.65046 -15.32711 -15.26267 -15.08929 -15.01185 -14.63458 -14.21313 -13.97710 -13.82789 -13.72013 -13.62645 -13.18894 -13.05116 -13.00129 -12.97734 -12.85144 -12.73781 -12.64107 -12.56532 -12.39920 -12.11351 -12.10604 -11.82080 -11.77423 -11.72343 -11.61354 -11.45408 -11.35240 -10.85456 -10.77794 -10.66474 -9.97739 -9.47091 -8.84631 -7.75729 -5.20541 1.42333 1.43941 1.52229 1.52569 1.87151 2.47474 2.65782 3.04994 3.34174 3.57480 3.64861 3.67107 3.73589 3.86936 3.92542 3.94981 3.98985 4.09085 4.13868 4.20726 4.28102 4.40229 4.43120 4.47259 4.52311 4.63546 4.67012 4.70478 4.74516 4.82101 4.85254 4.89602 4.89841 4.94402 4.97541 5.03320 5.04878 5.11969 5.21681 5.22844 5.30137 5.34107 5.35174 5.49008 5.54542 5.66871 5.82001 5.82509 5.95091 6.03609 6.30313 6.58368 7.08847 7.25548 7.79371 8.43209 9.24471 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008840 B = 0.004769 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3166.760033 B = 5870.436088 C = 7917.457618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.073 3.927 3 C -0.187 4.187 4 N -0.517 5.517 5 C 0.007 3.993 6 C 0.058 3.942 7 O -0.389 6.389 8 C 0.093 3.907 9 H 0.120 0.880 10 C 0.515 3.485 11 O -0.574 6.574 12 N -0.685 5.685 13 C 0.136 3.864 14 H 0.079 0.921 15 C 0.155 3.845 16 N -0.616 5.616 17 C -0.227 4.227 18 H 0.085 0.915 19 C -0.067 4.067 20 N -0.948 5.948 21 Si 0.972 3.028 22 H -0.290 1.290 23 H -0.301 1.301 24 H -0.264 1.264 25 C 0.139 3.861 26 C -0.073 4.073 27 C -0.124 4.124 28 C -0.127 4.127 29 C 0.037 3.963 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.028 0.972 36 H 0.057 0.943 37 H 0.121 0.879 38 H 0.029 0.971 39 H 0.118 0.882 40 H 0.080 0.920 41 H 0.409 0.591 42 H -0.016 1.016 43 H 0.067 0.933 44 H 0.240 0.760 45 H 0.039 0.961 46 H 0.026 0.974 47 H 0.064 0.936 48 H 0.078 0.922 49 H 0.060 0.940 50 H 0.032 0.968 51 H 0.081 0.919 52 H 0.067 0.933 53 H 0.019 0.981 54 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.890 -11.692 -2.552 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.035 4.035 3 C -0.246 4.246 4 N -0.242 5.242 5 C -0.121 4.121 6 C -0.018 4.018 7 O -0.307 6.307 8 C 0.032 3.968 9 H 0.138 0.862 10 C 0.301 3.699 11 O -0.453 6.453 12 N -0.337 5.337 13 C 0.030 3.970 14 H 0.097 0.903 15 C 0.029 3.971 16 N -0.342 5.342 17 C -0.356 4.356 18 H 0.103 0.897 19 C -0.260 4.260 20 N -0.599 5.599 21 Si 0.801 3.199 22 H -0.217 1.217 23 H -0.228 1.228 24 H -0.188 1.188 25 C 0.014 3.986 26 C -0.074 4.074 27 C -0.181 4.181 28 C -0.184 4.184 29 C -0.092 4.092 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.139 0.861 38 H 0.047 0.953 39 H 0.136 0.864 40 H 0.098 0.902 41 H 0.246 0.754 42 H 0.002 0.998 43 H 0.085 0.915 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.044 0.956 47 H 0.083 0.917 48 H 0.097 0.903 49 H 0.079 0.921 50 H 0.051 0.949 51 H 0.099 0.901 52 H 0.086 0.914 53 H 0.037 0.963 54 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.580 -11.522 -3.264 19.651 hybrid contribution 0.763 2.203 1.168 2.607 sum -14.817 -9.319 -2.096 17.629 Atomic orbital electron populations 1.21838 0.91665 1.03186 1.02706 1.21835 0.97459 0.91544 0.92629 1.22468 1.00169 0.99086 1.02859 1.62606 1.05371 1.53196 1.03001 1.23012 1.02483 0.96471 0.90085 1.23026 0.78646 1.01538 0.98602 1.88094 1.22152 1.81980 1.38518 1.21829 0.89174 0.99600 0.86236 0.86247 1.20610 0.89525 0.77839 0.81946 1.90675 1.74569 1.44210 1.35831 1.45536 1.06370 1.55804 1.25955 1.22202 0.79387 0.96657 0.98776 0.90314 1.21924 0.96185 0.95722 0.83272 1.44674 1.86475 1.01261 1.01780 1.19424 1.41621 0.87897 0.86697 0.89681 1.25570 1.03245 0.98224 0.98918 1.70124 1.58885 1.10013 1.20833 0.85162 0.77266 0.78254 0.79222 1.21689 1.22830 1.18803 1.21648 0.98482 0.83588 0.94893 1.21835 0.97052 0.94574 0.93972 1.21691 0.98812 0.95058 1.02587 1.21696 0.93731 1.01396 1.01623 1.22494 0.89949 0.98790 0.97936 0.90910 0.91043 0.91818 0.89758 0.90760 0.95287 0.92371 0.86140 0.95257 0.86370 0.90154 0.75417 0.99817 0.91483 0.94976 0.94350 0.95619 0.91673 0.90341 0.92065 0.94867 0.90053 0.91371 0.96312 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.85 71.98 0.64 -1.33 16 2 C 0.07 1.53 3.04 44.92 0.14 1.67 16 3 C -0.19 -4.64 8.50 71.98 0.61 -4.02 16 4 N -0.52 -11.76 4.75 -869.99 -4.14 -15.90 16 5 C 0.01 0.15 4.87 86.31 0.42 0.57 16 6 C 0.06 1.21 7.01 72.01 0.50 1.72 16 7 O -0.39 -12.42 10.01 -130.03 -1.30 -13.72 16 8 C 0.09 2.79 3.21 29.88 0.10 2.89 16 9 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 10 C 0.52 19.70 7.18 87.66 0.63 20.33 16 11 O -0.57 -27.75 16.15 15.90 0.26 -27.49 16 12 N -0.69 -23.88 4.51 -435.96 -1.97 -25.85 16 13 C 0.14 5.32 2.67 46.38 0.12 5.44 16 14 H 0.08 3.26 7.44 -2.38 -0.02 3.24 16 15 C 0.16 7.98 5.28 86.85 0.46 8.44 16 16 N -0.62 -30.68 3.39 -691.98 -2.35 -33.02 16 17 C -0.23 -12.46 10.27 84.03 0.86 -11.59 16 18 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 19 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 20 N -0.95 -58.78 10.09 21.65 0.22 -58.56 16 21 Si 0.97 46.25 29.55 68.60 2.03 48.28 16 22 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 24 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 25 C 0.14 5.24 6.41 86.73 0.56 5.79 16 26 C -0.07 -2.28 0.80 -50.99 -0.04 -2.32 16 27 C -0.12 -2.74 8.07 71.98 0.58 -2.16 16 28 C -0.13 -3.64 8.41 71.98 0.61 -3.03 16 29 C 0.04 1.11 4.43 86.31 0.38 1.49 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 0.83 6.30 -2.39 -0.02 0.81 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.03 0.92 6.46 -2.39 -0.02 0.90 16 36 H 0.06 1.39 6.54 -2.39 -0.02 1.37 16 37 H 0.12 1.72 6.11 -2.39 -0.01 1.71 16 38 H 0.03 0.72 6.52 -2.39 -0.02 0.71 16 39 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.41 12.10 7.05 -92.71 -0.65 11.45 16 42 H -0.02 -0.91 7.81 -2.39 -0.02 -0.93 16 43 H 0.07 4.09 5.87 -2.39 -0.01 4.07 16 44 H 0.24 14.80 8.31 -92.71 -0.77 14.03 16 45 H 0.04 1.35 7.76 -2.39 -0.02 1.33 16 46 H 0.03 0.98 7.85 -2.39 -0.02 0.96 16 47 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.06 1.26 6.48 -2.39 -0.02 1.25 16 50 H 0.03 1.14 7.59 -2.38 -0.02 1.12 16 51 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 52 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 53 H 0.02 0.71 6.44 -2.39 -0.02 0.69 16 54 H 0.09 2.70 8.01 -2.39 -0.02 2.68 16 Total: -1.00 -76.28 404.20 0.01 -76.27 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.23 Total: 29.51 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 7.03 Total: 20.48 kcal Atomic # 7 Polarization: -125.09 SS G_CDS: -8.23 Total: -133.32 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -1.05 Total: -41.21 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -76.28 0.01 -76.27 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974965917.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.887 kcal (2) G-P(sol) polarization free energy of solvation -76.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds