Wall clock time and date at job start Wed Apr 1 2020 00:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47095 * 2 1 4 4 N 1.46904 * 109.47228 * 119.99708 * 2 1 3 5 5 C 1.47010 * 110.99645 * 56.04666 * 4 2 1 6 6 C 1.53100 * 109.25438 * 177.60355 * 5 4 2 7 7 O 1.43014 * 109.25952 * 56.85466 * 6 5 4 8 8 C 1.43020 * 113.73522 * 301.32860 * 7 6 5 9 9 H 1.09002 * 109.50654 * 298.69137 * 8 7 6 10 10 C 1.50696 * 109.50699 * 178.60481 * 8 7 6 11 11 O 1.21277 * 120.00309 * 354.99381 * 10 8 7 12 12 N 1.34786 * 119.99877 * 174.99892 * 10 8 7 13 13 C 1.48377 * 127.17223 * 359.79560 * 12 10 8 14 14 C 1.54941 * 103.37625 * 219.23552 * 13 12 10 15 15 H 1.09001 * 110.89458 * 81.13577 * 14 13 12 16 16 N 1.46500 * 110.74150 * 204.38905 * 14 13 12 17 17 C 1.36936 * 119.99987 * 268.41964 * 16 14 13 18 18 H 1.08004 * 119.99840 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00225 * 179.97438 * 17 16 14 20 20 N 1.31616 * 119.99743 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00153 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47242 * 59.99918 * 21 19 17 23 23 H 1.48500 * 109.47181 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47132 * 300.00151 * 21 19 17 25 25 C 1.54616 * 102.83624 * 322.72418 * 14 13 12 26 26 C 1.52999 * 110.32768 * 262.95516 * 25 14 13 27 27 C 1.53007 * 110.41407 * 140.78434 * 25 14 13 28 28 C 1.47485 * 127.03052 * 179.97438 * 12 10 8 29 29 C 1.47011 * 111.00139 * 292.41291 * 4 2 1 30 30 H 1.09002 * 109.47039 * 299.99877 * 1 2 3 31 31 H 1.08995 * 109.47248 * 59.99780 * 1 2 3 32 32 H 1.09001 * 109.46959 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47039 * 240.00123 * 2 1 3 34 34 H 1.08998 * 109.47467 * 59.99855 * 3 2 1 35 35 H 1.08997 * 109.46909 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.46750 * 300.00100 * 3 2 1 37 37 H 1.09006 * 109.50752 * 57.67417 * 5 4 2 38 38 H 1.08992 * 109.50920 * 297.54022 * 5 4 2 39 39 H 1.08995 * 109.51292 * 296.91566 * 6 5 4 40 40 H 1.09009 * 109.50499 * 176.78057 * 6 5 4 41 41 H 1.09005 * 110.51886 * 100.79006 * 13 12 10 42 42 H 1.09006 * 110.83140 * 337.82723 * 13 12 10 43 43 H 0.96994 * 120.00094 * 88.41638 * 16 14 13 44 44 H 0.97003 * 119.99764 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.46892 * 177.07163 * 26 25 14 46 46 H 1.09000 * 109.47199 * 297.07499 * 26 25 14 47 47 H 1.09000 * 109.46597 * 57.07746 * 26 25 14 48 48 H 1.08999 * 109.46663 * 302.87496 * 27 25 14 49 49 H 1.09003 * 109.46588 * 62.87067 * 27 25 14 50 50 H 1.08997 * 109.47108 * 182.87293 * 27 25 14 51 51 H 1.09002 * 109.91598 * 35.15729 * 28 12 10 52 52 H 1.08999 * 109.91369 * 274.06810 * 28 12 10 53 53 H 1.09001 * 109.50847 * 62.45614 * 29 4 2 54 54 H 1.09001 * 109.50556 * 302.32642 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4726 -2.0545 1.2817 6 6 2.0539 -2.7587 2.5106 7 8 1.7622 -1.9867 3.6786 8 6 2.2809 -0.6547 3.6326 9 1 3.3674 -0.6897 3.5536 10 6 1.8912 0.0807 4.8889 11 8 1.1590 -0.4477 5.6985 12 7 2.3563 1.3258 5.1127 13 6 3.2576 2.1167 4.2388 14 6 4.2002 2.8255 5.2437 15 1 4.9976 2.1564 5.5672 16 7 4.7567 4.0482 4.6593 17 6 5.9508 4.0054 3.9906 18 1 6.4826 3.0703 3.8943 19 6 6.4779 5.1638 3.4363 20 7 5.8296 6.3032 3.5532 21 14 8.1073 5.1055 2.5247 22 1 7.9970 4.1747 1.3728 23 1 8.4475 6.4643 2.0316 24 1 9.1723 4.6309 3.4443 25 6 3.2563 3.1619 6.4213 26 6 2.7634 4.6062 6.3115 27 6 3.9710 2.9453 7.7567 28 6 2.0763 2.1821 6.2805 29 6 1.7020 0.0708 2.4151 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.7415 -2.6096 0.3830 38 1 0.3873 -2.0061 1.3693 39 1 3.1337 -2.8550 2.3982 40 1 1.6077 -3.7485 2.6078 41 1 2.6883 2.8474 3.6642 42 1 3.8243 1.4641 3.5745 43 1 4.2793 4.8880 4.7461 44 1 6.1981 7.1128 3.1663 45 1 2.0596 4.8122 7.1179 46 1 3.6118 5.2864 6.3869 47 1 2.2676 4.7488 5.3513 48 1 4.3267 1.9167 7.8157 49 1 4.8179 3.6275 7.8304 50 1 3.2774 3.1374 8.5753 51 1 1.9930 1.5698 7.1784 52 1 1.1508 2.7356 6.1216 53 1 0.6203 0.1532 2.5208 54 1 2.1383 1.0672 2.3437 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996184069.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:24 Heat of formation + Delta-G solvation = -68.002919 kcal Electronic energy + Delta-G solvation = -32422.944062 eV Core-core repulsion = 28394.751638 eV Total energy + Delta-G solvation = -4028.192424 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.81389 -40.64787 -39.24933 -37.76680 -35.87831 -34.79923 -32.86098 -32.72912 -32.45286 -29.20152 -28.53940 -28.28095 -28.17780 -26.88127 -25.83089 -25.39004 -23.25172 -22.67572 -20.69608 -20.48868 -19.94048 -19.19467 -18.42124 -17.70814 -17.30006 -17.06355 -16.54480 -16.41521 -16.12282 -15.90468 -15.59201 -15.52060 -15.23269 -15.08928 -14.87548 -14.71731 -14.42706 -14.23906 -14.02088 -13.80665 -13.37148 -13.29283 -13.05744 -13.04245 -12.91062 -12.80998 -12.76245 -12.67972 -12.53388 -12.36724 -12.10835 -12.08456 -12.07434 -11.95202 -11.83946 -11.53494 -11.49585 -11.32563 -10.95407 -10.84416 -10.77296 -9.83258 -9.41921 -8.95904 -7.89834 -5.17840 1.37907 1.52985 1.53512 1.57679 1.60076 2.59212 2.64540 2.83724 3.37700 3.42187 3.61606 3.68011 3.74337 3.81245 3.88317 3.90730 3.97645 4.09864 4.12695 4.19493 4.30590 4.33394 4.36397 4.41308 4.46969 4.49785 4.57573 4.65346 4.66374 4.73245 4.78039 4.78962 4.82842 4.86733 4.88004 4.91445 4.94576 5.04056 5.04818 5.10952 5.19426 5.25646 5.31631 5.32991 5.42290 5.52119 5.60190 5.83348 5.97004 5.99543 6.31670 6.40294 6.98403 7.40991 8.12668 8.38600 9.32734 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009427 B = 0.004146 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.543938 B = 6752.054815 C = 8564.219366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.079 3.921 3 C -0.152 4.152 4 N -0.533 5.533 5 C 0.014 3.986 6 C 0.056 3.944 7 O -0.384 6.384 8 C 0.088 3.912 9 H 0.096 0.904 10 C 0.537 3.463 11 O -0.568 6.568 12 N -0.609 5.609 13 C 0.086 3.914 14 C 0.172 3.828 15 H 0.059 0.941 16 N -0.719 5.719 17 C -0.240 4.240 18 H 0.075 0.925 19 C -0.063 4.063 20 N -0.964 5.964 21 Si 0.962 3.038 22 H -0.278 1.278 23 H -0.299 1.299 24 H -0.282 1.282 25 C -0.080 4.080 26 C -0.127 4.127 27 C -0.127 4.127 28 C 0.121 3.879 29 C 0.033 3.967 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.046 0.954 39 H 0.067 0.933 40 H 0.124 0.876 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.384 0.616 44 H 0.250 0.750 45 H 0.075 0.925 46 H 0.050 0.950 47 H 0.049 0.951 48 H 0.053 0.947 49 H 0.050 0.950 50 H 0.073 0.927 51 H 0.076 0.924 52 H 0.074 0.926 53 H 0.037 0.963 54 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.838 -13.657 -4.418 17.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.029 4.029 3 C -0.209 4.209 4 N -0.258 5.258 5 C -0.114 4.114 6 C -0.020 4.020 7 O -0.303 6.303 8 C 0.027 3.973 9 H 0.113 0.887 10 C 0.325 3.675 11 O -0.447 6.447 12 N -0.343 5.343 13 C -0.039 4.039 14 C 0.061 3.939 15 H 0.077 0.923 16 N -0.361 5.361 17 C -0.372 4.372 18 H 0.093 0.907 19 C -0.256 4.256 20 N -0.614 5.614 21 Si 0.792 3.208 22 H -0.205 1.205 23 H -0.226 1.226 24 H -0.208 1.208 25 C -0.082 4.082 26 C -0.185 4.185 27 C -0.184 4.184 28 C -0.002 4.002 29 C -0.095 4.095 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.121 0.879 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.131 0.869 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.142 0.858 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.221 0.779 44 H 0.059 0.941 45 H 0.094 0.906 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.092 0.908 51 H 0.094 0.906 52 H 0.093 0.907 53 H 0.056 0.944 54 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.680 -14.180 -3.970 17.622 hybrid contribution 0.066 0.846 -0.624 1.053 sum -9.613 -13.335 -4.594 17.068 Atomic orbital electron populations 1.22449 0.96888 1.02470 1.02406 1.21805 0.93202 0.95187 0.92679 1.21949 1.01748 0.95031 1.02178 1.62526 1.58992 1.02695 1.01632 1.22926 0.98147 0.89802 1.00503 1.23033 1.01198 0.94879 0.82896 1.88059 1.78147 1.22533 1.41531 1.21768 0.99435 0.84251 0.91846 0.88665 1.20046 0.79788 0.80119 0.87561 1.90664 1.38237 1.67255 1.48565 1.48735 1.48440 1.13651 1.23425 1.23557 0.91615 0.94257 0.94484 1.21394 0.93030 0.88542 0.90902 0.92302 1.42654 1.22983 1.06109 1.64351 1.19548 0.97642 0.94303 1.25716 0.90709 1.25367 1.01779 0.95443 1.02994 1.69777 1.40901 0.99083 1.51646 0.85388 0.80588 0.76011 0.78809 1.20454 1.22590 1.20836 1.21668 0.94454 0.95466 0.96584 1.21662 1.00869 0.94265 1.01709 1.21757 1.00232 1.01320 0.95104 1.22211 0.97788 0.91515 0.88648 1.22630 0.98863 0.98693 0.89340 0.94047 0.90558 0.91630 0.87922 0.93575 0.92383 0.90629 0.86886 0.93608 0.91456 0.85779 0.91107 0.90190 0.77917 0.94089 0.90625 0.93053 0.93223 0.92780 0.93082 0.90787 0.90574 0.90746 0.94443 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 8.46 71.98 0.61 -2.42 16 2 C 0.08 1.42 3.11 44.92 0.14 1.56 16 3 C -0.15 -3.10 8.71 71.98 0.63 -2.48 16 4 N -0.53 -11.21 4.78 -869.97 -4.16 -15.37 16 5 C 0.01 0.24 5.08 86.32 0.44 0.68 16 6 C 0.06 1.08 7.01 72.02 0.50 1.59 16 7 O -0.38 -11.13 10.01 -130.02 -1.30 -12.44 16 8 C 0.09 2.52 2.50 29.88 0.07 2.60 16 9 H 0.10 2.62 7.69 -2.39 -0.02 2.61 16 10 C 0.54 18.00 7.27 87.65 0.64 18.64 16 11 O -0.57 -22.94 16.85 15.94 0.27 -22.67 16 12 N -0.61 -18.83 3.30 -808.66 -2.67 -21.50 16 13 C 0.09 2.75 5.11 86.68 0.44 3.20 16 14 C 0.17 6.17 3.16 46.21 0.15 6.31 16 15 H 0.06 2.21 7.81 -2.39 -0.02 2.19 16 16 N -0.72 -32.24 4.97 -317.20 -1.58 -33.82 16 17 C -0.24 -12.17 9.96 84.03 0.84 -11.33 16 18 H 0.07 3.66 7.83 -2.91 -0.02 3.63 16 19 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 20 N -0.96 -55.10 13.06 21.65 0.28 -54.81 16 21 Si 0.96 43.64 29.55 68.60 2.03 45.67 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 C -0.08 -2.40 0.95 -51.28 -0.05 -2.45 16 26 C -0.13 -3.83 7.02 71.98 0.51 -3.33 16 27 C -0.13 -3.45 8.23 71.98 0.59 -2.86 16 28 C 0.12 3.49 6.28 86.54 0.54 4.03 16 29 C 0.03 0.84 3.92 86.31 0.34 1.18 16 30 H 0.04 0.82 6.66 -2.39 -0.02 0.80 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 0.99 6.40 -2.39 -0.02 0.97 16 33 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.05 1.06 6.27 -2.39 -0.01 1.04 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.05 0.84 6.39 -2.39 -0.02 0.82 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.07 2.35 8.08 -2.38 -0.02 2.33 16 42 H 0.08 2.49 6.68 -2.38 -0.02 2.48 16 43 H 0.38 18.33 5.13 -92.71 -0.48 17.85 16 44 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 45 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.05 1.82 7.00 -2.39 -0.02 1.80 16 47 H 0.05 1.55 7.95 -2.39 -0.02 1.54 16 48 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 51 H 0.08 2.19 7.59 -2.39 -0.02 2.18 16 52 H 0.07 2.02 7.68 -2.39 -0.02 2.00 16 53 H 0.04 1.02 6.64 -2.39 -0.02 1.01 16 54 H 0.10 2.57 3.96 -2.39 -0.01 2.56 16 Total: -1.00 -64.42 403.73 0.13 -64.29 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: 0.41 Total: 38.64 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 6.85 Total: 12.01 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -8.13 Total: -125.51 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -1.03 Total: -35.11 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -64.42 0.13 -64.29 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996184069.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.710 kcal (2) G-P(sol) polarization free energy of solvation -64.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds