Wall clock time and date at job start Wed Apr 1 2020 00:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.46853 * 2 1 4 4 N 1.46902 * 109.46833 * 119.99420 * 2 1 3 5 5 C 1.47014 * 111.00395 * 298.63950 * 4 2 1 6 6 C 1.53093 * 109.25945 * 177.60888 * 5 4 2 7 7 O 1.43017 * 109.25915 * 56.84701 * 6 5 4 8 8 C 1.43019 * 113.73994 * 301.32711 * 7 6 5 9 9 H 1.08998 * 109.51080 * 298.69817 * 8 7 6 10 10 C 1.50693 * 109.50739 * 178.60189 * 8 7 6 11 11 O 1.21281 * 120.00431 * 355.00865 * 10 8 7 12 12 N 1.34779 * 119.99981 * 175.00315 * 10 8 7 13 13 C 1.46927 * 120.62838 * 359.72128 * 12 10 8 14 14 C 1.52758 * 109.00722 * 233.58352 * 13 12 10 15 15 C 1.53040 * 109.38814 * 305.58944 * 14 13 12 16 16 C 1.53042 * 109.53400 * 61.23702 * 15 14 13 17 17 H 1.09001 * 109.52350 * 58.61066 * 16 15 14 18 18 N 1.46504 * 109.49646 * 178.68501 * 16 15 14 19 19 C 1.46495 * 119.99955 * 59.83868 * 18 16 15 20 20 C 1.36938 * 119.99955 * 239.84597 * 18 16 15 21 21 H 1.07997 * 120.00621 * 22.99969 * 20 18 16 22 22 C 1.38814 * 119.99632 * 203.00473 * 20 18 16 23 23 N 1.31618 * 120.00212 * 11.65096 * 22 20 18 24 24 Si 1.86797 * 119.99999 * 191.64602 * 22 20 18 25 25 H 1.48505 * 109.47235 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47023 * 120.00194 * 24 22 20 27 27 H 1.48498 * 109.47326 * 240.00190 * 24 22 20 28 28 C 1.46933 * 120.63236 * 180.02562 * 12 10 8 29 29 C 1.47019 * 110.99841 * 175.00248 * 4 2 1 30 30 H 1.08995 * 109.47664 * 300.00044 * 1 2 3 31 31 H 1.08997 * 109.47289 * 60.00441 * 1 2 3 32 32 H 1.09008 * 109.47242 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47542 * 239.99416 * 2 1 3 34 34 H 1.08997 * 109.47500 * 299.99550 * 3 2 1 35 35 H 1.08997 * 109.47667 * 59.99938 * 3 2 1 36 36 H 1.09004 * 109.47350 * 179.97438 * 3 2 1 37 37 H 1.08997 * 109.50194 * 297.54200 * 5 4 2 38 38 H 1.08991 * 109.50506 * 57.67264 * 5 4 2 39 39 H 1.08999 * 109.50770 * 296.91362 * 6 5 4 40 40 H 1.08993 * 109.51086 * 176.78185 * 6 5 4 41 41 H 1.08995 * 109.58740 * 353.42327 * 13 12 10 42 42 H 1.08997 * 109.58473 * 113.84716 * 13 12 10 43 43 H 1.09006 * 109.56594 * 185.55377 * 14 13 12 44 44 H 1.09001 * 109.38959 * 65.52002 * 14 13 12 45 45 H 1.09003 * 109.45792 * 301.22583 * 15 14 13 46 46 H 1.08999 * 109.46458 * 181.26167 * 15 14 13 47 47 H 1.09004 * 109.46870 * 93.84877 * 19 18 16 48 48 H 1.08997 * 109.47249 * 213.85137 * 19 18 16 49 49 H 1.09006 * 109.47414 * 333.85165 * 19 18 16 50 50 H 0.96997 * 120.00538 * 179.97438 * 23 22 20 51 51 H 1.08998 * 109.58350 * 246.15752 * 28 12 10 52 52 H 1.08999 * 109.58627 * 6.43497 * 28 12 10 53 53 H 1.08999 * 109.50288 * 62.45989 * 29 4 2 54 54 H 1.09005 * 109.54342 * 302.35222 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.5750 -0.0071 2.4219 6 6 2.0555 -0.7931 3.6446 7 8 3.4780 -0.9305 3.5878 8 6 3.9457 -1.5944 2.4106 9 1 3.5400 -2.6055 2.3772 10 6 5.4512 -1.6567 2.4326 11 8 6.0683 -1.1016 3.3169 12 7 6.1120 -2.3293 1.4695 13 6 5.3781 -3.0119 0.3951 14 6 5.8272 -4.4707 0.3349 15 6 7.3497 -4.5281 0.1913 16 6 8.0037 -3.8694 1.4082 17 1 7.6854 -4.3830 2.3154 18 7 9.4611 -3.9527 1.2850 19 6 10.1359 -3.3359 0.1402 20 6 10.1927 -4.6071 2.2398 21 1 9.7242 -5.3580 2.8587 22 6 11.5366 -4.3054 2.4122 23 7 12.0530 -3.2444 1.8292 24 14 12.6123 -5.4051 3.4720 25 1 11.7977 -6.5241 4.0101 26 1 13.7222 -5.9516 2.6507 27 1 13.1721 -4.6141 4.5972 28 6 7.5796 -2.3994 1.4777 29 6 3.4843 -0.8164 1.1753 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.1299 1.4426 0.0005 37 1 1.9940 0.9987 2.4480 38 1 0.4867 0.0509 2.4312 39 1 1.5943 -1.7806 3.6469 40 1 1.7776 -0.2588 4.5530 41 1 4.3082 -2.9684 0.5986 42 1 5.5909 -2.5274 -0.5577 43 1 5.3624 -4.9607 -0.5208 44 1 5.5288 -4.9794 1.2516 45 1 7.6494 -3.9984 -0.7130 46 1 7.6695 -5.5681 0.1257 47 1 10.4586 -2.3296 0.4077 48 1 11.0039 -3.9346 -0.1357 49 1 9.4471 -3.2844 -0.7031 50 1 12.9920 -3.0333 1.9499 51 1 7.9758 -1.8638 0.6151 52 1 7.9618 -1.9497 2.3941 53 1 3.9338 0.1766 1.1815 54 1 3.7903 -1.3488 0.2746 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027547585.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:55 Heat of formation + Delta-G solvation = -59.286681 kcal Electronic energy + Delta-G solvation = -31914.134366 eV Core-core repulsion = 27886.319906 eV Total energy + Delta-G solvation = -4027.814460 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.85274 -40.41550 -38.91447 -37.71400 -36.83861 -34.26479 -32.94209 -32.85254 -32.40327 -30.41766 -28.30096 -28.07383 -28.01217 -26.41690 -25.27591 -25.12475 -23.15352 -22.88930 -21.11108 -20.58720 -19.93591 -18.82557 -18.44778 -17.84758 -17.22219 -17.09248 -16.64541 -16.53321 -16.02179 -15.75153 -15.65630 -15.45448 -15.24284 -15.16325 -15.00280 -14.89056 -14.41005 -14.07459 -13.92719 -13.89731 -13.86490 -13.42344 -13.15060 -12.95332 -12.89898 -12.81970 -12.74925 -12.51871 -12.35401 -12.18867 -12.08920 -12.08389 -12.04868 -11.80853 -11.71390 -11.60966 -11.54301 -11.38591 -10.78957 -10.70978 -10.66801 -9.75054 -9.41598 -8.77400 -7.85489 -5.34271 1.41655 1.44351 1.44587 1.54771 1.65375 2.48264 2.66166 2.87430 3.28213 3.47005 3.60099 3.63810 3.84529 3.93431 3.94941 4.00587 4.06345 4.08628 4.18724 4.23159 4.24025 4.33545 4.36544 4.42614 4.49183 4.56888 4.68152 4.68409 4.70193 4.77389 4.77721 4.87481 4.88772 4.90667 4.94619 5.03331 5.04774 5.07724 5.16836 5.27130 5.29642 5.41422 5.42672 5.44597 5.57044 5.61639 5.71683 5.86722 5.99774 6.01918 6.31180 6.38722 7.07626 7.13470 7.84826 8.26987 9.17364 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021143 B = 0.002637 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.989062 B =10615.887053 C =11080.858020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.074 3.926 3 C -0.188 4.188 4 N -0.522 5.522 5 C 0.011 3.989 6 C 0.056 3.944 7 O -0.394 6.394 8 C 0.091 3.909 9 H 0.113 0.887 10 C 0.509 3.491 11 O -0.582 6.582 12 N -0.597 5.597 13 C 0.095 3.905 14 C -0.123 4.123 15 C -0.122 4.122 16 C 0.167 3.833 17 H 0.043 0.957 18 N -0.609 5.609 19 C 0.179 3.821 20 C -0.263 4.263 21 H 0.066 0.934 22 C -0.054 4.054 23 N -0.937 5.937 24 Si 0.969 3.031 25 H -0.267 1.267 26 H -0.286 1.286 27 H -0.295 1.295 28 C 0.115 3.885 29 C 0.029 3.971 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.041 0.959 37 H 0.037 0.963 38 H 0.115 0.885 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.092 0.908 43 H 0.114 0.886 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.058 0.942 47 H -0.003 1.003 48 H 0.018 0.982 49 H 0.038 0.962 50 H 0.248 0.752 51 H 0.063 0.937 52 H 0.040 0.960 53 H 0.032 0.968 54 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.141 3.827 -8.711 30.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.034 4.034 3 C -0.247 4.247 4 N -0.247 5.247 5 C -0.117 4.117 6 C -0.020 4.020 7 O -0.313 6.313 8 C 0.029 3.971 9 H 0.131 0.869 10 C 0.296 3.704 11 O -0.461 6.461 12 N -0.331 5.331 13 C -0.026 4.026 14 C -0.161 4.161 15 C -0.161 4.161 16 C 0.059 3.941 17 H 0.061 0.939 18 N -0.331 5.331 19 C 0.034 3.966 20 C -0.394 4.394 21 H 0.084 0.916 22 C -0.249 4.249 23 N -0.584 5.584 24 Si 0.797 3.203 25 H -0.191 1.191 26 H -0.212 1.212 27 H -0.223 1.223 28 C -0.010 4.010 29 C -0.099 4.099 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.133 0.867 39 H 0.093 0.907 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.015 0.985 48 H 0.037 0.963 49 H 0.057 0.943 50 H 0.057 0.943 51 H 0.081 0.919 52 H 0.059 0.941 53 H 0.050 0.950 54 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -28.738 3.754 -8.111 30.096 hybrid contribution 1.878 0.722 0.886 2.198 sum -26.860 4.475 -7.226 28.172 Atomic orbital electron populations 1.21829 0.92547 1.02882 1.02446 1.21856 0.96978 0.92096 0.92451 1.22482 1.00717 0.98519 1.02954 1.62574 1.08198 1.51019 1.02916 1.22931 1.02775 0.96021 0.89929 1.23017 0.78853 1.01300 0.98881 1.88111 1.23936 1.79108 1.40101 1.21867 0.89180 0.98905 0.87124 0.86918 1.20884 0.90303 0.78170 0.81010 1.90705 1.70356 1.47281 1.37744 1.48240 1.06567 1.51467 1.26854 1.22274 0.97292 0.92970 0.90064 1.21831 0.94434 0.95855 1.03986 1.21923 0.95722 1.00683 0.97810 1.20791 0.83303 0.92494 0.97520 0.93894 1.44176 1.01355 1.63876 1.23726 1.20505 0.93744 0.95442 0.86869 1.19563 0.92713 1.13827 1.13270 0.91572 1.25826 0.99675 0.98303 1.01079 1.70236 1.12760 1.26849 1.48565 0.85170 0.78754 0.78386 0.77949 1.19111 1.21249 1.22266 1.22013 0.78816 0.99379 1.00758 1.22792 0.89723 0.99541 0.97860 0.92409 0.90988 0.91454 0.88660 0.90569 0.92687 0.93999 0.94518 0.86675 0.90725 0.86839 0.86598 0.88957 0.86813 0.91939 0.91490 0.92320 0.98502 0.96277 0.94347 0.94261 0.91902 0.94142 0.94985 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.00 71.98 0.65 -0.40 16 2 C 0.07 0.80 2.96 44.91 0.13 0.93 16 3 C -0.19 -2.34 8.49 71.98 0.61 -1.73 16 4 N -0.52 -7.43 4.72 -869.99 -4.10 -11.53 16 5 C 0.01 0.16 4.86 86.31 0.42 0.58 16 6 C 0.06 0.97 7.01 72.01 0.50 1.48 16 7 O -0.39 -11.23 10.01 -130.02 -1.30 -12.53 16 8 C 0.09 2.24 2.38 29.88 0.07 2.31 16 9 H 0.11 2.25 7.42 -2.39 -0.02 2.24 16 10 C 0.51 17.67 7.12 87.65 0.62 18.29 16 11 O -0.58 -27.41 15.92 15.92 0.25 -27.16 16 12 N -0.60 -18.48 2.98 -819.83 -2.44 -20.92 16 13 C 0.09 1.80 5.01 86.22 0.43 2.23 16 14 C -0.12 -2.45 6.06 30.53 0.19 -2.27 16 15 C -0.12 -3.66 5.13 30.62 0.16 -3.51 16 16 C 0.17 6.88 2.74 45.05 0.12 7.01 16 17 H 0.04 1.93 7.87 -2.39 -0.02 1.91 16 18 N -0.61 -31.13 2.81 -702.42 -1.98 -33.11 16 19 C 0.18 8.90 7.91 127.77 1.01 9.91 16 20 C -0.26 -15.04 9.59 84.03 0.81 -14.24 16 21 H 0.07 3.72 7.82 -2.91 -0.02 3.70 16 22 C -0.05 -3.13 5.12 84.86 0.43 -2.69 16 23 N -0.94 -57.36 10.64 21.65 0.23 -57.13 16 24 Si 0.97 46.89 29.57 68.60 2.03 48.92 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 27 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 28 C 0.12 4.66 5.79 86.35 0.50 5.16 16 29 C 0.03 0.55 4.17 86.31 0.36 0.91 16 30 H 0.06 0.43 6.38 -2.39 -0.02 0.41 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.10 0.90 8.12 -2.39 -0.02 0.88 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.05 0.73 6.44 -2.39 -0.02 0.72 16 36 H 0.04 0.67 6.58 -2.38 -0.02 0.65 16 37 H 0.04 0.63 6.42 -2.39 -0.02 0.62 16 38 H 0.12 1.09 6.22 -2.39 -0.01 1.08 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.12 1.53 4.64 -2.39 -0.01 1.51 16 42 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 44 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.07 1.93 6.71 -2.39 -0.02 1.91 16 46 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.00 -0.19 7.42 -2.38 -0.02 -0.20 16 48 H 0.02 1.01 7.22 -2.39 -0.02 0.99 16 49 H 0.04 1.57 6.45 -2.38 -0.02 1.55 16 50 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 51 H 0.06 2.50 7.51 -2.39 -0.02 2.49 16 52 H 0.04 2.04 7.00 -2.39 -0.02 2.02 16 53 H 0.03 0.75 6.56 -2.39 -0.02 0.73 16 54 H 0.12 1.67 5.47 -2.38 -0.01 1.66 16 Total: -1.00 -79.11 395.14 0.59 -78.52 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.88 Total: 10.97 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: 7.02 Total: 23.97 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -8.29 Total: -122.70 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -1.05 Total: -39.69 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -79.11 0.59 -78.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027547585.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.235 kcal (2) G-P(sol) polarization free energy of solvation -79.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds