Wall clock time and date at job start Wed Apr 1 2020 00:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47418 * 2 1 4 4 N 1.46900 * 109.47289 * 120.00021 * 2 1 3 5 5 C 1.47017 * 111.00108 * 56.35933 * 4 2 1 6 6 C 1.53097 * 109.25788 * 182.39275 * 5 4 2 7 7 O 1.43016 * 109.26373 * 303.15644 * 6 5 4 8 8 C 1.43013 * 113.73417 * 58.66644 * 7 6 5 9 9 H 1.09004 * 109.50856 * 61.26988 * 8 7 6 10 10 C 1.50708 * 109.50406 * 181.39723 * 8 7 6 11 11 O 1.21279 * 119.99830 * 4.78349 * 10 8 7 12 12 N 1.34779 * 119.99694 * 184.78729 * 10 8 7 13 13 C 1.46499 * 119.99512 * 180.02562 * 12 10 8 14 14 H 1.09000 * 109.35750 * 324.72361 * 13 12 10 15 15 C 1.54842 * 109.35825 * 204.99970 * 13 12 10 16 16 C 1.50122 * 110.81473 * 200.92756 * 15 13 12 17 17 C 1.52524 * 105.41773 * 97.68215 * 16 15 13 18 18 C 1.46247 * 114.27680 * 270.59337 * 17 16 15 19 19 N 1.50163 * 107.53100 * 58.40496 * 18 17 16 20 20 C 1.36943 * 120.53918 * 109.57203 * 19 18 17 21 21 H 1.07998 * 120.00476 * 157.11333 * 20 19 18 22 22 C 1.38816 * 119.99494 * 337.11550 * 20 19 18 23 23 N 1.31618 * 120.00026 * 339.74134 * 22 20 19 24 24 Si 1.86802 * 119.99570 * 159.74198 * 22 20 19 25 25 H 1.48494 * 109.47451 * 60.00106 * 24 22 20 26 26 H 1.48505 * 109.46870 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47102 * 299.99818 * 24 22 20 28 28 C 1.43431 * 118.92792 * 289.58959 * 19 18 17 29 29 C 1.47005 * 111.00524 * 180.02562 * 4 2 1 30 30 H 1.09005 * 109.47215 * 300.00061 * 1 2 3 31 31 H 1.09003 * 109.47152 * 60.00325 * 1 2 3 32 32 H 1.09007 * 109.47093 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47304 * 239.99502 * 2 1 3 34 34 H 1.08993 * 109.47586 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.46694 * 299.99955 * 3 2 1 36 36 H 1.08999 * 109.47290 * 59.99493 * 3 2 1 37 37 H 1.08997 * 109.51034 * 302.33389 * 5 4 2 38 38 H 1.09004 * 109.50217 * 62.46544 * 5 4 2 39 39 H 1.09005 * 109.50306 * 63.09449 * 6 5 4 40 40 H 1.09002 * 109.50543 * 183.22109 * 6 5 4 41 41 H 0.96994 * 120.00414 * 359.97438 * 12 10 8 42 42 H 1.08996 * 109.20791 * 321.26777 * 15 13 12 43 43 H 1.09000 * 109.20845 * 80.62506 * 15 13 12 44 44 H 1.08999 * 110.25362 * 216.65284 * 16 15 13 45 45 H 1.08998 * 110.25427 * 338.70992 * 16 15 13 46 46 H 1.09006 * 108.52018 * 31.82742 * 17 16 15 47 47 H 1.08999 * 108.53015 * 149.35197 * 17 16 15 48 48 H 1.09007 * 109.84230 * 177.91167 * 18 17 16 49 49 H 1.08998 * 109.84468 * 298.89884 * 18 17 16 50 50 H 0.97005 * 119.99342 * 180.02562 * 23 22 20 51 51 H 1.08999 * 108.15898 * 329.85420 * 28 19 18 52 52 H 1.09001 * 108.16230 * 213.28673 * 28 19 18 53 53 H 1.09009 * 109.50618 * 57.66824 * 29 4 2 54 54 H 1.09002 * 109.54389 * 297.56536 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4785 -2.0572 1.2778 6 6 1.9649 -2.7199 2.5693 7 8 3.3946 -2.7019 2.5994 8 6 3.9554 -1.3884 2.5254 9 1 3.6243 -0.8024 3.3829 10 6 5.4596 -1.4824 2.5297 11 8 5.9993 -2.5682 2.5025 12 7 6.2048 -0.3599 2.5640 13 6 7.6669 -0.4514 2.5676 14 1 7.9727 -1.3280 3.1387 15 6 8.2592 0.8204 3.2229 16 6 9.6887 1.0174 2.8091 17 6 9.6445 2.0262 1.6659 18 6 9.4972 1.4266 0.3402 19 7 8.2281 0.6239 0.3452 20 6 7.1375 1.0420 -0.3696 21 1 6.3841 0.3296 -0.6716 22 6 7.0003 2.3818 -0.7061 23 7 7.6618 3.3001 -0.0342 24 14 5.8769 2.8812 -2.1125 25 1 4.4895 2.4414 -1.8180 26 1 5.9060 4.3576 -2.2690 27 1 6.3426 2.2415 -3.3692 28 6 8.1766 -0.5877 1.1111 29 6 3.4892 -0.7116 1.2338 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1299 1.4425 -0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 0.3892 -2.0174 1.2770 38 1 1.8229 -2.6351 0.4201 39 1 1.5758 -2.1727 3.4280 40 1 1.6131 -3.7510 2.6042 41 1 5.7732 0.5084 2.5854 42 1 7.6742 1.6874 2.9161 43 1 8.2108 0.7207 4.3073 44 1 10.2708 1.4148 3.6405 45 1 10.1151 0.0754 2.4645 46 1 8.8074 2.7039 1.8343 47 1 10.5657 2.6086 1.6821 48 1 9.4367 2.2098 -0.4155 49 1 10.3462 0.7753 0.1323 50 1 7.5655 4.2364 -0.2692 51 1 9.1793 -1.0139 1.1406 52 1 7.5291 -1.2923 0.5892 53 1 3.8674 0.3102 1.2008 54 1 3.8668 -1.2672 0.3754 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034363300.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:08 Heat of formation + Delta-G solvation = -62.159244 kcal Electronic energy + Delta-G solvation = -32974.132052 eV Core-core repulsion = 28946.193028 eV Total energy + Delta-G solvation = -4027.939024 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.52177 -40.28529 -39.13671 -37.68690 -35.83494 -34.80575 -33.24177 -32.94855 -32.69678 -31.24515 -28.52439 -28.06535 -27.64463 -25.71548 -25.10718 -24.61986 -22.77861 -21.75994 -21.12409 -20.93043 -20.75023 -18.55130 -18.47426 -17.80136 -17.34974 -16.95559 -16.69990 -16.43281 -16.19936 -16.08942 -15.77015 -15.40536 -15.32648 -15.23636 -14.88242 -14.54276 -14.31425 -14.02352 -13.78900 -13.43055 -13.35723 -13.27567 -13.19764 -13.15514 -12.88693 -12.79234 -12.67067 -12.60428 -12.37302 -12.32654 -12.12860 -11.89716 -11.79681 -11.72074 -11.55881 -11.28916 -11.12251 -10.90877 -10.80746 -10.66059 -10.43212 -9.97795 -9.53580 -8.58566 -7.78630 -5.16892 1.44617 1.50566 1.53786 1.55355 1.93060 2.54612 2.61178 3.07226 3.34269 3.62246 3.64730 3.71100 3.86853 3.89384 3.94725 4.00511 4.05425 4.19188 4.26874 4.32368 4.40023 4.44003 4.46958 4.54618 4.62305 4.63519 4.68281 4.70149 4.76467 4.85244 4.85637 4.90282 4.91537 4.93137 5.03931 5.07986 5.22876 5.25160 5.31900 5.33422 5.36286 5.47609 5.62155 5.69129 5.72891 5.80780 5.82239 5.94299 6.02952 6.24864 6.44184 6.63570 7.22144 7.26904 7.94039 8.45135 9.24732 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010355 B = 0.005042 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.381492 B = 5552.328948 C = 7689.300109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.074 3.926 3 C -0.149 4.149 4 N -0.524 5.524 5 C 0.011 3.989 6 C 0.059 3.941 7 O -0.386 6.386 8 C 0.091 3.909 9 H 0.111 0.889 10 C 0.516 3.484 11 O -0.575 6.575 12 N -0.691 5.691 13 C 0.125 3.875 14 H 0.074 0.926 15 C -0.098 4.098 16 C -0.105 4.105 17 C -0.122 4.122 18 C 0.167 3.833 19 N -0.591 5.591 20 C -0.242 4.242 21 H 0.046 0.954 22 C -0.027 4.027 23 N -0.906 5.906 24 Si 0.935 3.065 25 H -0.270 1.270 26 H -0.296 1.296 27 H -0.298 1.298 28 C 0.156 3.844 29 C 0.040 3.960 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.036 0.964 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.121 0.879 38 H 0.028 0.972 39 H 0.076 0.924 40 H 0.123 0.877 41 H 0.406 0.594 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.035 0.965 48 H 0.059 0.941 49 H 0.016 0.984 50 H 0.247 0.753 51 H 0.045 0.955 52 H 0.007 0.993 53 H 0.093 0.907 54 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.528 -4.122 6.435 13.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.034 4.034 3 C -0.206 4.206 4 N -0.250 5.250 5 C -0.116 4.116 6 C -0.017 4.017 7 O -0.305 6.305 8 C 0.029 3.971 9 H 0.128 0.872 10 C 0.301 3.699 11 O -0.454 6.454 12 N -0.341 5.341 13 C 0.018 3.982 14 H 0.092 0.908 15 C -0.136 4.136 16 C -0.142 4.142 17 C -0.160 4.160 18 C 0.044 3.956 19 N -0.313 5.313 20 C -0.373 4.373 21 H 0.063 0.937 22 C -0.223 4.223 23 N -0.552 5.552 24 Si 0.765 3.235 25 H -0.195 1.195 26 H -0.222 1.222 27 H -0.226 1.226 28 C 0.026 3.974 29 C -0.089 4.089 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.139 0.861 38 H 0.047 0.953 39 H 0.095 0.905 40 H 0.141 0.859 41 H 0.241 0.759 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.053 0.947 48 H 0.077 0.923 49 H 0.034 0.966 50 H 0.057 0.943 51 H 0.063 0.937 52 H 0.026 0.974 53 H 0.112 0.888 54 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -11.199 -4.612 6.783 13.881 hybrid contribution -0.314 0.597 -1.973 2.085 sum -11.513 -4.015 4.809 13.107 Atomic orbital electron populations 1.21854 0.91563 1.02859 1.03168 1.21711 0.97509 0.94534 0.89647 1.21914 1.00355 0.95514 1.02837 1.62371 1.05678 1.17029 1.39895 1.23002 1.02541 0.88109 0.97997 1.23019 0.78756 1.02999 0.96968 1.88077 1.22043 1.25603 1.94728 1.21833 0.89938 0.85973 0.99349 0.87199 1.20429 0.89183 0.84243 0.76027 1.90641 1.74474 1.29008 1.51300 1.45869 1.07322 1.08217 1.72697 1.22634 0.78614 0.98476 0.98523 0.90832 1.21546 0.96905 0.96338 0.98822 1.20942 0.95622 0.99428 0.98255 1.20820 1.01003 0.98569 0.95636 1.20116 0.84638 0.93441 0.97423 1.44259 1.10047 1.24943 1.52012 1.18997 1.01058 0.90835 1.26365 0.93664 1.25216 1.00500 0.95741 1.00878 1.70080 1.46134 0.99495 1.39450 0.85857 0.80297 0.76238 0.81121 1.19539 1.22218 1.22600 1.20742 0.97623 0.88528 0.90503 1.22507 0.89670 1.01327 0.95435 0.90983 0.91184 0.91365 0.95693 0.94488 0.91677 0.90726 0.86125 0.95316 0.90542 0.85950 0.75909 0.92360 0.91590 0.90441 0.92131 0.90786 0.94674 0.92312 0.96593 0.94338 0.93674 0.97425 0.88833 0.96440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.85 71.98 0.64 -1.66 16 2 C 0.07 1.76 2.67 44.91 0.12 1.88 16 3 C -0.15 -3.91 8.96 71.98 0.65 -3.26 16 4 N -0.52 -13.00 4.59 -870.00 -4.00 -17.00 16 5 C 0.01 0.23 5.25 86.31 0.45 0.69 16 6 C 0.06 1.24 7.01 72.01 0.50 1.74 16 7 O -0.39 -12.22 10.01 -130.02 -1.30 -13.52 16 8 C 0.09 2.80 3.22 29.88 0.10 2.89 16 9 H 0.11 2.86 8.14 -2.38 -0.02 2.84 16 10 C 0.52 19.33 7.01 87.66 0.61 19.94 16 11 O -0.57 -25.99 16.17 15.94 0.26 -25.73 16 12 N -0.69 -24.54 5.05 -436.48 -2.20 -26.75 16 13 C 0.13 4.59 2.91 46.27 0.13 4.73 16 14 H 0.07 2.72 7.58 -2.39 -0.02 2.70 16 15 C -0.10 -3.27 5.23 30.30 0.16 -3.11 16 16 C -0.10 -3.40 5.76 29.51 0.17 -3.23 16 17 C -0.12 -4.79 5.02 28.36 0.14 -4.65 16 18 C 0.17 7.44 5.25 83.58 0.44 7.88 16 19 N -0.59 -27.62 2.60 -707.82 -1.84 -29.46 16 20 C -0.24 -12.38 9.62 84.03 0.81 -11.57 16 21 H 0.05 2.43 7.89 -2.91 -0.02 2.41 16 22 C -0.03 -1.35 4.90 84.86 0.42 -0.94 16 23 N -0.91 -46.99 9.45 21.65 0.20 -46.79 16 24 Si 0.93 42.35 29.60 68.60 2.03 44.38 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 27 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 28 C 0.16 6.62 4.78 87.60 0.42 7.03 16 29 C 0.04 1.23 4.57 86.31 0.39 1.62 16 30 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 0.96 6.30 -2.38 -0.02 0.95 16 33 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.04 1.19 6.35 -2.39 -0.02 1.17 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 37 H 0.12 1.79 6.11 -2.39 -0.01 1.77 16 38 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.41 13.68 8.31 -92.71 -0.77 12.91 16 42 H 0.06 2.25 6.59 -2.39 -0.02 2.23 16 43 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 45 H 0.06 1.96 6.29 -2.39 -0.02 1.94 16 46 H 0.07 3.37 5.31 -2.38 -0.01 3.36 16 47 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 48 H 0.06 2.98 6.04 -2.38 -0.01 2.96 16 49 H 0.02 0.67 8.12 -2.39 -0.02 0.65 16 50 H 0.25 12.78 8.31 -92.70 -0.77 12.01 16 51 H 0.05 1.82 6.89 -2.39 -0.02 1.80 16 52 H 0.01 0.36 7.83 -2.39 -0.02 0.34 16 53 H 0.09 3.05 6.05 -2.38 -0.01 3.04 16 54 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -62.23 399.62 -0.58 -62.82 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: 0.11 Total: 32.05 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 6.15 Total: 20.00 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -7.84 Total: -120.00 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -1.04 Total: -39.25 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -62.23 -0.58 -62.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034363300.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.659 kcal (2) G-P(sol) polarization free energy of solvation -62.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds