Wall clock time and date at job start Wed Apr 1 2020 00:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47338 * 2 1 4 4 N 1.46898 * 109.47578 * 179.97438 * 3 2 1 5 5 C 1.46844 * 111.00064 * 65.78879 * 4 3 2 6 6 C 1.53038 * 109.52512 * 185.84476 * 5 4 3 7 7 C 1.53118 * 109.27655 * 300.81691 * 6 5 4 8 8 C 1.53125 * 109.15881 * 57.65853 * 7 6 5 9 9 H 1.08991 * 109.53591 * 62.30319 * 8 7 6 10 10 C 1.50702 * 109.50316 * 182.40612 * 8 7 6 11 11 O 1.21284 * 119.99960 * 119.80039 * 10 8 7 12 12 N 1.34777 * 119.99735 * 299.52684 * 10 8 7 13 13 C 1.46500 * 120.00023 * 180.27741 * 12 10 8 14 14 C 1.53001 * 109.46965 * 179.97438 * 13 12 10 15 15 H 1.08994 * 109.51114 * 59.90257 * 14 13 12 16 16 C 1.53301 * 109.51017 * 179.97438 * 14 13 12 17 17 N 1.47152 * 108.38369 * 172.22851 * 16 14 13 18 18 C 1.36931 * 120.98243 * 129.44724 * 17 16 14 19 19 H 1.08001 * 119.99885 * 333.74817 * 18 17 16 20 20 C 1.38809 * 120.00238 * 153.74547 * 18 17 16 21 21 N 1.31617 * 120.00205 * 160.02592 * 20 18 17 22 22 Si 1.86802 * 119.99995 * 340.03248 * 20 18 17 23 23 H 1.48502 * 109.47305 * 91.87366 * 22 20 18 24 24 H 1.48500 * 109.47237 * 211.87654 * 22 20 18 25 25 H 1.48505 * 109.46998 * 331.87147 * 22 20 18 26 26 C 1.47154 * 118.03431 * 309.46348 * 17 16 14 27 27 C 1.53303 * 108.38185 * 50.53831 * 26 17 16 28 28 O 1.42957 * 109.22413 * 307.69450 * 27 26 17 29 29 C 1.46842 * 111.00390 * 190.00281 * 4 3 2 30 30 H 1.09003 * 109.47023 * 60.00080 * 1 2 3 31 31 H 1.08995 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47238 * 300.00632 * 1 2 3 33 33 H 1.09005 * 109.47501 * 240.00216 * 2 1 3 34 34 H 1.09003 * 109.47023 * 119.99920 * 2 1 3 35 35 H 1.08999 * 109.47472 * 59.99512 * 3 2 1 36 36 H 1.09003 * 109.46998 * 299.99936 * 3 2 1 37 37 H 1.09000 * 109.46182 * 305.85595 * 5 4 3 38 38 H 1.09004 * 109.46466 * 65.83502 * 5 4 3 39 39 H 1.09000 * 109.50611 * 60.75896 * 6 5 4 40 40 H 1.09006 * 109.50535 * 180.87887 * 6 5 4 41 41 H 1.08999 * 109.52565 * 297.75642 * 7 6 5 42 42 H 1.08995 * 109.52414 * 177.56110 * 7 6 5 43 43 H 0.97003 * 119.99859 * 0.26841 * 12 10 8 44 44 H 1.08994 * 109.46760 * 299.99688 * 13 12 10 45 45 H 1.09004 * 109.47227 * 59.99685 * 13 12 10 46 46 H 1.08997 * 109.68189 * 291.95050 * 16 14 13 47 47 H 1.09002 * 109.67991 * 52.50671 * 16 14 13 48 48 H 0.96999 * 120.00107 * 179.97438 * 21 20 18 49 49 H 1.09000 * 109.68263 * 170.25629 * 26 17 16 50 50 H 1.09001 * 109.68493 * 290.78052 * 26 17 16 51 51 H 1.09002 * 109.51251 * 67.61953 * 27 26 17 52 52 H 1.08998 * 109.50819 * 187.76995 * 27 26 17 53 53 H 1.09000 * 109.46852 * 54.14021 * 29 4 3 54 54 H 1.09000 * 109.45290 * 294.16653 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0358 0.8802 -1.2494 6 6 5.5587 0.7613 -1.1550 7 6 6.1592 2.1473 -0.9041 8 6 5.5580 2.7310 0.3776 9 1 5.8209 2.0976 1.2247 10 6 6.0996 4.1196 0.6003 11 8 5.3424 5.0660 0.6439 12 7 7.4248 4.3090 0.7566 13 6 7.9507 5.6581 0.9792 14 6 9.4725 5.5948 1.1239 15 1 9.9076 5.1795 0.2150 16 6 10.0238 7.0062 1.3563 17 7 11.4558 6.8980 1.6776 18 6 12.3859 7.6540 1.0154 19 1 12.1837 8.0034 0.0137 20 6 13.5886 7.9712 1.6316 21 7 14.6230 8.3392 0.9057 22 14 13.7391 7.8757 3.4911 23 1 14.2269 6.5280 3.8797 24 1 14.6996 8.9050 3.9635 25 1 12.4104 8.1182 4.1083 26 6 11.8586 5.9532 2.7314 27 6 11.2179 4.5931 2.4319 28 8 9.8121 4.7673 2.2391 29 6 4.0352 2.7926 0.2388 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.6041 -0.1071 -1.4138 38 1 3.7735 1.5343 -2.0809 39 1 5.8215 0.0964 -0.3323 40 1 5.9509 0.3584 -2.0889 41 1 5.9294 2.8016 -1.7450 42 1 7.2401 2.0612 -0.7930 43 1 8.0303 3.5520 0.7218 44 1 7.6920 6.2932 0.1320 45 1 7.5163 6.0718 1.8894 46 1 9.8942 7.6041 0.4542 47 1 9.4956 7.4746 2.1868 48 1 15.4633 8.5612 1.3363 49 1 12.9441 5.8537 2.7398 50 1 11.5157 6.3158 3.7004 51 1 11.6601 4.1733 1.5284 52 1 11.3895 3.9175 3.2699 53 1 3.6030 3.1945 1.1551 54 1 3.7728 3.4376 -0.5998 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035479385.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:54 Heat of formation + Delta-G solvation = -88.434612 kcal Electronic energy + Delta-G solvation = -30258.860554 eV Core-core repulsion = 26229.782145 eV Total energy + Delta-G solvation = -4029.078409 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.36619 -40.34333 -39.37777 -36.67412 -35.94597 -35.78411 -33.69388 -33.14450 -32.53079 -31.90992 -29.39209 -27.65735 -27.13237 -25.19186 -24.84778 -23.99807 -23.40181 -22.25992 -21.82684 -21.16761 -20.56884 -18.99082 -18.31528 -17.69704 -17.32831 -17.28342 -16.71237 -16.34621 -16.21674 -15.92957 -15.86512 -15.54885 -15.41415 -15.30365 -15.13023 -14.88676 -14.53993 -14.40550 -14.16963 -13.92613 -13.71364 -13.55104 -13.51908 -13.36385 -12.97143 -12.81984 -12.58953 -12.45662 -12.40175 -12.32287 -12.08696 -12.06243 -11.94296 -11.60963 -11.58545 -11.42897 -11.38532 -11.29203 -11.16661 -10.77410 -10.51351 -10.11523 -9.33194 -9.00035 -8.21021 -5.55092 1.25623 1.39983 1.47951 1.61052 2.06630 2.36648 2.66675 2.92820 3.00387 3.19788 3.59410 3.73815 3.86012 3.90172 3.98247 4.02507 4.12754 4.15478 4.21678 4.25902 4.26823 4.33526 4.37688 4.46538 4.49102 4.55126 4.56356 4.62415 4.67714 4.68875 4.74370 4.78646 4.81517 4.86956 4.89876 4.91937 4.97169 4.98116 5.10314 5.12245 5.16394 5.24839 5.31193 5.37392 5.40307 5.44782 5.75675 6.06078 6.06273 6.13771 6.17507 6.53427 6.79692 7.21796 7.51933 7.92136 8.98180 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.032095 B = 0.001880 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.188411 B =14889.617051 C =14980.833622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.054 3.946 4 N -0.541 5.541 5 C 0.047 3.953 6 C -0.110 4.110 7 C -0.110 4.110 8 C -0.093 4.093 9 H 0.119 0.881 10 C 0.517 3.483 11 O -0.587 6.587 12 N -0.709 5.709 13 C 0.140 3.860 14 C 0.078 3.922 15 H 0.070 0.930 16 C 0.118 3.882 17 N -0.622 5.622 18 C -0.253 4.253 19 H 0.058 0.942 20 C -0.031 4.031 21 N -0.953 5.953 22 Si 0.946 3.054 23 H -0.266 1.266 24 H -0.310 1.310 25 H -0.269 1.269 26 C 0.079 3.921 27 C 0.059 3.941 28 O -0.381 6.381 29 C 0.082 3.918 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.029 0.971 37 H 0.091 0.909 38 H 0.026 0.974 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.086 0.914 43 H 0.415 0.585 44 H 0.085 0.915 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.036 0.964 48 H 0.263 0.737 49 H 0.065 0.935 50 H 0.034 0.966 51 H 0.056 0.944 52 H 0.122 0.878 53 H 0.068 0.932 54 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.566 -21.568 -2.347 32.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.074 4.074 4 N -0.265 5.265 5 C -0.081 4.081 6 C -0.147 4.147 7 C -0.148 4.148 8 C -0.114 4.114 9 H 0.137 0.863 10 C 0.304 3.696 11 O -0.467 6.467 12 N -0.360 5.360 13 C 0.015 3.985 14 C 0.019 3.981 15 H 0.088 0.912 16 C -0.008 4.008 17 N -0.347 5.347 18 C -0.382 4.382 19 H 0.075 0.925 20 C -0.226 4.226 21 N -0.599 5.599 22 Si 0.775 3.225 23 H -0.193 1.193 24 H -0.239 1.239 25 H -0.194 1.194 26 C -0.046 4.046 27 C -0.018 4.018 28 O -0.300 6.300 29 C -0.046 4.046 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.110 0.890 38 H 0.044 0.956 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.252 0.748 44 H 0.103 0.897 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.054 0.946 48 H 0.072 0.928 49 H 0.083 0.917 50 H 0.052 0.948 51 H 0.074 0.926 52 H 0.140 0.860 53 H 0.086 0.914 54 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -23.920 -21.209 -1.825 32.021 hybrid contribution 0.856 1.291 -0.020 1.549 sum -23.064 -19.918 -1.845 30.530 Atomic orbital electron populations 1.21730 0.94958 1.02297 1.01842 1.21494 0.95894 0.95133 1.02692 1.22187 0.86337 0.98260 1.00612 1.61942 1.07959 1.20825 1.35787 1.22280 0.96250 1.00264 0.89274 1.21574 0.93654 0.96019 1.03497 1.21603 1.01096 0.97359 0.94769 1.21268 0.95852 0.92129 1.02191 0.86304 1.21051 0.81879 0.91674 0.74968 1.90685 1.58342 1.45075 1.52620 1.45802 1.07580 1.10195 1.72455 1.21185 0.90401 0.84891 1.02025 1.22640 0.93837 0.91866 0.89781 0.91250 1.21658 0.83579 0.95555 1.00017 1.44455 1.02514 1.44757 1.43000 1.18860 0.95969 1.27053 0.96335 0.92453 1.25847 0.95803 0.99298 1.01698 1.69941 1.01938 1.51397 1.36581 0.85953 0.77066 0.76963 0.82474 1.19272 1.23933 1.19404 1.22161 0.99328 0.91624 0.91466 1.23024 0.80793 0.95689 1.02336 1.87828 1.23524 1.69010 1.49677 1.21657 0.93289 0.89067 1.00596 0.92832 0.91715 0.92702 0.91484 0.91400 0.91159 0.95275 0.89034 0.95602 0.90155 0.89427 0.92576 0.89546 0.74825 0.89715 0.91697 0.90895 0.94567 0.92789 0.91678 0.94762 0.92566 0.85998 0.91379 0.95842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.65 16 2 C -0.11 -1.23 5.86 30.59 0.18 -1.05 16 3 C 0.05 0.76 4.96 86.30 0.43 1.19 16 4 N -0.54 -8.48 4.66 -896.37 -4.17 -12.65 16 5 C 0.05 0.59 5.29 86.33 0.46 1.05 16 6 C -0.11 -1.17 6.09 30.65 0.19 -0.98 16 7 C -0.11 -1.49 5.17 30.68 0.16 -1.33 16 8 C -0.09 -1.63 2.69 -11.48 -0.03 -1.66 16 9 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 10 C 0.52 12.47 7.15 87.66 0.63 13.10 16 11 O -0.59 -19.06 15.98 -3.04 -0.05 -19.11 16 12 N -0.71 -15.67 5.36 -463.05 -2.48 -18.15 16 13 C 0.14 3.66 5.37 86.38 0.46 4.13 16 14 C 0.08 2.33 2.86 30.70 0.09 2.41 16 15 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 16 C 0.12 4.41 6.02 86.36 0.52 4.93 16 17 N -0.62 -28.52 2.83 -697.52 -1.98 -30.50 16 18 C -0.25 -14.04 10.10 84.03 0.85 -13.19 16 19 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 20 C -0.03 -1.79 5.26 84.86 0.45 -1.34 16 21 N -0.95 -58.69 13.97 21.65 0.30 -58.39 16 22 Si 0.95 45.70 24.28 68.60 1.67 47.36 16 23 H -0.27 -11.82 6.58 99.48 0.65 -11.16 16 24 H -0.31 -15.32 7.11 99.48 0.71 -14.62 16 25 H -0.27 -12.76 6.54 99.48 0.65 -12.11 16 26 C 0.08 3.20 4.38 86.36 0.38 3.58 16 27 C 0.06 1.83 6.98 72.08 0.50 2.33 16 28 O -0.38 -11.52 10.14 -148.98 -1.51 -13.03 16 29 C 0.08 1.61 4.03 86.33 0.35 1.96 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.65 6.43 -2.38 -0.02 0.64 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 1.05 7.99 -2.39 -0.02 1.03 16 36 H 0.03 0.43 8.12 -2.39 -0.02 0.41 16 37 H 0.09 0.93 6.21 -2.39 -0.01 0.92 16 38 H 0.03 0.37 8.14 -2.38 -0.02 0.35 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 40 H 0.09 0.69 8.14 -2.38 -0.02 0.68 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.09 0.94 7.67 -2.39 -0.02 0.92 16 43 H 0.42 7.39 7.85 -92.71 -0.73 6.66 16 44 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 46 H 0.07 2.71 7.96 -2.39 -0.02 2.69 16 47 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 49 H 0.07 2.85 4.61 -2.39 -0.01 2.84 16 50 H 0.03 1.40 6.86 -2.39 -0.02 1.39 16 51 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 52 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 53 H 0.07 1.50 7.99 -2.39 -0.02 1.48 16 54 H 0.02 0.54 8.08 -2.39 -0.02 0.52 16 Total: -1.00 -69.72 407.87 -1.88 -71.61 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.03 Total: 18.38 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 6.32 Total: 14.48 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -8.33 Total: -119.69 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -1.56 Total: -32.14 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.67 Total: 47.36 kcal Total: -69.72 -1.88 -71.61 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035479385.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.829 kcal (2) G-P(sol) polarization free energy of solvation -69.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds