Wall clock time and date at job start Wed Apr 1 2020 00:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47511 * 2 1 4 4 N 1.46903 * 109.47206 * 180.02562 * 3 2 1 5 5 C 1.46847 * 110.99813 * 293.95630 * 4 3 2 6 6 C 1.53036 * 109.51963 * 174.16185 * 5 4 3 7 7 C 1.53114 * 109.28062 * 59.17661 * 6 5 4 8 8 C 1.53116 * 109.16253 * 302.34480 * 7 6 5 9 9 H 1.09001 * 109.50368 * 297.67682 * 8 7 6 10 10 C 1.50700 * 109.50440 * 177.59448 * 8 7 6 11 11 O 1.21279 * 120.00041 * 239.99856 * 10 8 7 12 12 N 1.34778 * 119.99870 * 60.00105 * 10 8 7 13 13 C 1.46503 * 119.99891 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.47139 * 180.02562 * 13 12 10 15 15 H 1.08996 * 109.50751 * 304.89890 * 14 13 12 16 16 C 1.53292 * 109.51090 * 184.74295 * 14 13 12 17 17 N 1.47154 * 108.38345 * 187.76915 * 16 14 13 18 18 C 1.36939 * 120.98420 * 230.55817 * 17 16 14 19 19 H 1.08000 * 119.99904 * 26.22110 * 18 17 16 20 20 C 1.38812 * 119.99746 * 206.21835 * 18 17 16 21 21 N 1.31612 * 120.00198 * 16.91711 * 20 18 17 22 22 Si 1.86802 * 119.99666 * 196.91444 * 20 18 17 23 23 H 1.48500 * 109.47152 * 90.00122 * 22 20 18 24 24 H 1.48503 * 109.46805 * 210.00162 * 22 20 18 25 25 H 1.48500 * 109.47352 * 330.00125 * 22 20 18 26 26 C 1.47151 * 118.03188 * 50.53973 * 17 16 14 27 27 C 1.53296 * 108.38657 * 309.46161 * 26 17 16 28 28 O 1.42957 * 109.51354 * 64.99712 * 14 13 12 29 29 C 1.46838 * 110.99933 * 169.74277 * 4 3 2 30 30 H 1.08996 * 109.47582 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46952 * 300.00233 * 1 2 3 32 32 H 1.08999 * 109.47197 * 59.99751 * 1 2 3 33 33 H 1.09004 * 109.46952 * 239.99766 * 2 1 3 34 34 H 1.08999 * 109.47197 * 120.00249 * 2 1 3 35 35 H 1.08992 * 109.46865 * 59.99771 * 3 2 1 36 36 H 1.09005 * 109.46975 * 299.99860 * 3 2 1 37 37 H 1.08994 * 109.46597 * 54.14248 * 5 4 3 38 38 H 1.09001 * 109.45274 * 294.16880 * 5 4 3 39 39 H 1.08993 * 109.50648 * 299.22993 * 6 5 4 40 40 H 1.09002 * 109.53235 * 179.13919 * 6 5 4 41 41 H 1.09000 * 109.52481 * 182.43980 * 7 6 5 42 42 H 1.09003 * 109.57547 * 62.28368 * 7 6 5 43 43 H 0.97000 * 120.00338 * 359.97438 * 12 10 8 44 44 H 1.09001 * 109.47093 * 59.99418 * 13 12 10 45 45 H 1.09003 * 109.46937 * 299.99967 * 13 12 10 46 46 H 1.08996 * 109.68692 * 307.49630 * 16 14 13 47 47 H 1.09003 * 109.67915 * 68.01785 * 16 14 13 48 48 H 0.97005 * 120.00334 * 179.97438 * 21 20 18 49 49 H 1.09000 * 109.67870 * 189.73539 * 26 17 16 50 50 H 1.09006 * 109.68390 * 69.18828 * 26 17 16 51 51 H 1.09000 * 109.51334 * 172.22560 * 27 26 17 52 52 H 1.08996 * 109.51270 * 292.37812 * 27 26 17 53 53 H 1.09003 * 109.46301 * 65.82585 * 29 4 3 54 54 H 1.08997 * 109.46488 * 305.85599 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4424 -0.0006 5 6 4.0358 0.8855 1.2519 6 6 5.5586 0.7663 1.1581 7 6 6.1592 2.1510 0.9009 8 6 5.5581 2.7290 -0.3832 9 1 5.8214 2.0917 -1.2274 10 6 6.0997 4.1166 -0.6122 11 8 5.3423 5.0624 -0.6636 12 7 7.4258 4.3064 -0.7599 13 6 7.9523 5.6553 -0.9830 14 6 9.4751 5.5926 -1.1170 15 1 9.8978 5.1026 -0.2400 16 6 10.0379 7.0139 -1.2319 17 7 11.4724 6.9210 -1.5464 18 6 12.4003 7.6157 -0.8173 19 1 12.1896 7.8871 0.2066 20 6 13.6118 7.9711 -1.3943 21 7 13.7494 7.9479 -2.7030 22 14 15.0468 8.4825 -0.3131 23 1 15.8505 7.2853 0.0416 24 1 15.8994 9.4513 -1.0479 25 1 14.5311 9.1176 0.9263 26 6 11.8803 6.0592 -2.6672 27 6 11.2278 4.6844 -2.4824 28 8 9.8212 4.8531 -2.2905 29 6 4.0352 2.7913 -0.2447 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9562 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.6040 -0.1009 1.4208 38 1 3.7734 1.5435 2.0804 39 1 5.8215 0.0977 0.3384 40 1 5.9513 0.3673 2.0933 41 1 7.2401 2.0645 0.7902 42 1 5.9305 2.8097 1.7388 43 1 8.0317 3.5501 -0.7185 44 1 7.6872 6.2929 -0.1397 45 1 7.5240 6.0658 -1.8975 46 1 9.5215 7.5500 -2.0281 47 1 9.9020 7.5400 -0.2870 48 1 14.5959 8.1966 -3.1062 49 1 12.9652 5.9530 -2.6726 50 1 11.5494 6.4992 -3.6080 51 1 11.4039 4.0757 -3.3693 52 1 11.6578 4.1916 -1.6105 53 1 3.7729 3.4403 0.5909 54 1 3.6031 3.1891 -1.1629 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035479478.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:06 Heat of formation + Delta-G solvation = -92.569575 kcal Electronic energy + Delta-G solvation = -30164.651776 eV Core-core repulsion = 26135.394061 eV Total energy + Delta-G solvation = -4029.257715 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.35641 -40.19493 -39.35246 -36.52134 -35.94295 -35.76057 -33.42960 -32.97653 -32.38248 -31.80208 -29.24145 -27.46333 -27.06027 -25.23956 -24.84019 -23.95339 -23.27798 -22.25908 -21.64398 -21.11095 -20.54671 -18.90746 -18.26783 -17.52356 -17.28824 -16.93787 -16.59431 -16.34549 -16.20824 -16.12976 -15.53523 -15.50464 -15.27751 -15.10962 -14.93392 -14.87830 -14.58819 -14.38322 -14.25119 -13.83806 -13.54369 -13.45479 -13.22585 -13.00846 -12.81883 -12.70125 -12.58542 -12.53748 -12.44029 -12.16878 -12.08484 -12.05532 -11.93927 -11.88051 -11.60443 -11.42299 -11.33154 -11.28858 -10.82440 -10.74344 -10.53885 -10.11995 -9.32701 -8.76727 -7.92044 -5.39710 1.46945 1.47617 1.56937 1.61097 2.07546 2.47413 2.76933 2.94325 3.22950 3.48214 3.59618 3.74151 3.86891 3.97748 4.02987 4.05210 4.14225 4.19418 4.26270 4.27231 4.37715 4.46950 4.48340 4.51832 4.56789 4.61272 4.62778 4.69045 4.70917 4.74195 4.78902 4.81755 4.89502 4.90363 4.97543 4.98430 5.05291 5.10894 5.16775 5.23764 5.25175 5.31587 5.37930 5.40757 5.45207 5.54781 5.60589 6.06370 6.14413 6.24898 6.32387 6.53553 7.05256 7.21716 7.73223 8.26832 9.13917 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.030577 B = 0.001821 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.505042 B =15368.838417 C =15496.740202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.054 3.946 4 N -0.541 5.541 5 C 0.047 3.953 6 C -0.110 4.110 7 C -0.110 4.110 8 C -0.093 4.093 9 H 0.118 0.882 10 C 0.517 3.483 11 O -0.587 6.587 12 N -0.709 5.709 13 C 0.140 3.860 14 C 0.081 3.919 15 H 0.071 0.929 16 C 0.116 3.884 17 N -0.612 5.612 18 C -0.267 4.267 19 H 0.073 0.927 20 C -0.049 4.049 21 N -0.936 5.936 22 Si 0.972 3.028 23 H -0.281 1.281 24 H -0.296 1.296 25 H -0.268 1.268 26 C 0.142 3.858 27 C 0.054 3.946 28 O -0.389 6.389 29 C 0.083 3.917 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.030 0.970 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.026 0.974 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.414 0.586 44 H 0.086 0.914 45 H 0.059 0.941 46 H 0.016 0.984 47 H 0.071 0.929 48 H 0.252 0.748 49 H 0.068 0.932 50 H -0.003 1.003 51 H 0.109 0.891 52 H 0.053 0.947 53 H 0.024 0.976 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.277 -19.985 8.149 29.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.074 4.074 4 N -0.265 5.265 5 C -0.080 4.080 6 C -0.147 4.147 7 C -0.148 4.148 8 C -0.115 4.115 9 H 0.136 0.864 10 C 0.304 3.696 11 O -0.468 6.468 12 N -0.360 5.360 13 C 0.016 3.984 14 C 0.021 3.979 15 H 0.089 0.911 16 C -0.011 4.011 17 N -0.336 5.336 18 C -0.397 4.397 19 H 0.091 0.909 20 C -0.245 4.245 21 N -0.582 5.582 22 Si 0.800 3.200 23 H -0.208 1.208 24 H -0.223 1.223 25 H -0.193 1.193 26 C 0.017 3.983 27 C -0.023 4.023 28 O -0.309 6.309 29 C -0.046 4.046 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.045 0.955 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.075 0.925 43 H 0.251 0.749 44 H 0.104 0.896 45 H 0.077 0.923 46 H 0.034 0.966 47 H 0.090 0.910 48 H 0.061 0.939 49 H 0.086 0.914 50 H 0.016 0.984 51 H 0.127 0.873 52 H 0.071 0.929 53 H 0.042 0.958 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.643 -19.615 7.527 29.454 hybrid contribution 1.179 1.420 0.723 1.983 sum -19.464 -18.194 8.249 27.891 Atomic orbital electron populations 1.21730 0.94951 1.02299 1.01841 1.21490 0.95893 0.95115 1.02691 1.22188 0.86326 0.98276 1.00613 1.61941 1.07970 1.21023 1.35610 1.22279 0.96234 1.00302 0.89230 1.21570 0.93669 0.95991 1.03501 1.21601 1.01094 0.97415 0.94690 1.21270 0.95903 0.92077 1.02209 0.86386 1.21074 0.81853 0.91700 0.74974 1.90681 1.58350 1.45127 1.52610 1.45832 1.07524 1.10188 1.72484 1.21164 0.90653 0.84837 1.01772 1.22627 0.93499 0.93169 0.88588 0.91074 1.21604 0.85100 0.95025 0.99327 1.44338 1.01129 1.51687 1.36495 1.19569 0.96285 1.29991 0.93864 0.90929 1.25829 1.02173 0.99974 0.96520 1.70191 1.25090 1.52939 1.09941 0.85200 0.79140 0.77479 0.78203 1.20798 1.22305 1.19313 1.21327 0.99390 0.89083 0.88548 1.23158 0.80588 0.96940 1.01630 1.87806 1.23931 1.74291 1.44824 1.21649 0.93236 0.89101 1.00586 0.91704 0.92804 0.92733 0.91442 0.91449 0.95218 0.91217 0.89009 0.95543 0.90214 0.89339 0.89557 0.92478 0.74887 0.89609 0.92250 0.96633 0.91011 0.93928 0.91388 0.98440 0.87324 0.92905 0.95777 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 71.98 0.71 -0.70 16 2 C -0.11 -1.27 5.87 30.59 0.18 -1.09 16 3 C 0.05 0.78 4.96 86.30 0.43 1.21 16 4 N -0.54 -8.79 4.65 -896.39 -4.17 -12.96 16 5 C 0.05 0.61 5.29 86.33 0.46 1.07 16 6 C -0.11 -1.21 6.09 30.64 0.19 -1.02 16 7 C -0.11 -1.55 5.16 30.67 0.16 -1.39 16 8 C -0.09 -1.72 2.69 -11.49 -0.03 -1.75 16 9 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 10 C 0.52 13.16 7.16 87.66 0.63 13.79 16 11 O -0.59 -19.89 15.98 -3.02 -0.05 -19.94 16 12 N -0.71 -16.89 5.41 -463.05 -2.50 -19.40 16 13 C 0.14 4.03 5.35 86.38 0.46 4.49 16 14 C 0.08 2.63 2.81 30.69 0.09 2.72 16 15 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 16 C 0.12 4.75 6.02 86.35 0.52 5.27 16 17 N -0.61 -30.42 3.05 -697.54 -2.13 -32.54 16 18 C -0.27 -14.42 9.65 84.03 0.81 -13.61 16 19 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 20 C -0.05 -2.71 4.95 84.86 0.42 -2.29 16 21 N -0.94 -54.66 11.14 21.65 0.24 -54.42 16 22 Si 0.97 43.83 29.59 68.60 2.03 45.85 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 26 C 0.14 6.77 5.45 86.35 0.47 7.24 16 27 C 0.05 1.96 6.99 72.08 0.50 2.46 16 28 O -0.39 -13.57 10.33 -148.98 -1.54 -15.11 16 29 C 0.08 1.68 4.03 86.33 0.35 2.03 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.07 0.68 6.44 -2.39 -0.02 0.66 16 35 H 0.03 0.45 8.12 -2.39 -0.02 0.43 16 36 H 0.07 1.08 7.98 -2.38 -0.02 1.07 16 37 H 0.09 0.96 6.22 -2.39 -0.01 0.94 16 38 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.09 0.99 7.64 -2.39 -0.02 0.97 16 42 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.41 8.03 7.94 -92.71 -0.74 7.30 16 44 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.07 2.78 7.96 -2.39 -0.02 2.76 16 48 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 49 H 0.07 3.59 6.14 -2.39 -0.01 3.57 16 50 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 51 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 52 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 53 H 0.02 0.57 8.08 -2.39 -0.02 0.55 16 54 H 0.07 1.55 7.99 -2.39 -0.02 1.53 16 Total: -1.00 -67.71 414.83 -1.66 -69.37 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.12 Total: 20.71 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 6.34 Total: 18.44 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -8.56 Total: -119.32 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -1.59 Total: -35.05 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -67.71 -1.66 -69.37 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035479478.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.203 kcal (2) G-P(sol) polarization free energy of solvation -67.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds