Wall clock time and date at job start Wed Apr 1 2020 00:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47159 * 2 1 4 4 N 1.46902 * 109.47391 * 120.00157 * 2 1 3 5 5 C 1.46847 * 110.99788 * 293.43715 * 4 2 1 6 6 C 1.53042 * 109.52344 * 174.15689 * 5 4 2 7 7 C 1.53121 * 109.27559 * 59.18181 * 6 5 4 8 8 C 1.53125 * 109.15960 * 302.34412 * 7 6 5 9 9 C 1.46844 * 111.00154 * 169.22803 * 4 2 1 10 10 H 1.08997 * 109.46591 * 65.82405 * 9 4 2 11 11 C 1.50697 * 109.46000 * 305.85255 * 9 4 2 12 12 O 1.21281 * 120.00713 * 329.70478 * 11 9 4 13 13 N 1.34782 * 119.99872 * 149.70704 * 11 9 4 14 14 C 1.46497 * 120.00273 * 180.02562 * 13 11 9 15 15 C 1.52995 * 109.47200 * 179.97438 * 14 13 11 16 16 H 1.08996 * 109.51512 * 59.99896 * 15 14 13 17 17 C 1.53303 * 109.51322 * 180.10129 * 15 14 13 18 18 N 1.47152 * 108.38389 * 172.22407 * 17 15 14 19 19 C 1.36937 * 120.97852 * 129.44456 * 18 17 15 20 20 H 1.07998 * 120.00009 * 206.36028 * 19 18 17 21 21 C 1.38810 * 120.00052 * 26.35991 * 19 18 17 22 22 N 1.31618 * 120.00413 * 16.42644 * 21 19 18 23 23 Si 1.86808 * 119.99890 * 196.42993 * 21 19 18 24 24 H 1.48496 * 109.47105 * 89.99968 * 23 21 19 25 25 H 1.48503 * 109.47030 * 210.00028 * 23 21 19 26 26 H 1.48495 * 109.47035 * 329.99977 * 23 21 19 27 27 C 1.47146 * 118.03596 * 309.46567 * 18 17 15 28 28 C 1.53288 * 108.38892 * 50.53667 * 27 18 17 29 29 O 1.42957 * 109.26132 * 307.72144 * 28 27 18 30 30 H 1.08998 * 109.47103 * 60.00127 * 1 2 3 31 31 H 1.09000 * 109.46766 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47152 * 299.99824 * 1 2 3 33 33 H 1.09000 * 109.47152 * 240.00176 * 2 1 3 34 34 H 1.09006 * 109.47724 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47384 * 300.00267 * 3 2 1 36 36 H 1.09007 * 109.47255 * 59.99833 * 3 2 1 37 37 H 1.09000 * 109.46269 * 54.14231 * 5 4 2 38 38 H 1.09002 * 109.45944 * 294.17011 * 5 4 2 39 39 H 1.08996 * 109.49967 * 299.24012 * 6 5 4 40 40 H 1.09000 * 109.49947 * 179.12110 * 6 5 4 41 41 H 1.08996 * 109.52171 * 182.43906 * 7 6 5 42 42 H 1.08998 * 109.52618 * 62.25027 * 7 6 5 43 43 H 1.08999 * 109.49989 * 297.71560 * 8 7 6 44 44 H 1.08990 * 109.50121 * 177.59641 * 8 7 6 45 45 H 0.97003 * 119.99430 * 359.97438 * 13 11 9 46 46 H 1.09002 * 109.47002 * 299.99816 * 14 13 11 47 47 H 1.08998 * 109.46928 * 59.99355 * 14 13 11 48 48 H 1.08996 * 109.67752 * 291.94837 * 17 15 14 49 49 H 1.08998 * 109.67982 * 52.45927 * 17 15 14 50 50 H 0.96994 * 120.00469 * 180.02562 * 22 21 19 51 51 H 1.09001 * 109.67891 * 170.26133 * 27 18 17 52 52 H 1.09007 * 109.68230 * 290.80740 * 27 18 17 53 53 H 1.09001 * 109.51479 * 67.61639 * 28 27 18 54 54 H 1.08998 * 109.51756 * 187.72512 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 1.6811 0.0578 2.4154 6 6 2.0755 -0.7599 3.6475 7 6 3.5791 -1.0461 3.6040 8 6 3.9127 -1.7855 2.3053 9 6 3.4649 -0.9380 1.1122 10 1 3.9963 0.0136 1.1229 11 6 3.7733 -1.6708 -0.1680 12 8 2.9529 -2.4237 -0.6487 13 7 4.9609 -1.4895 -0.7789 14 6 5.2606 -2.2014 -2.0238 15 6 6.6620 -1.8200 -2.5047 16 1 7.3945 -2.0930 -1.7452 17 6 6.9756 -2.5625 -3.8088 18 7 8.2418 -2.0406 -4.3471 19 6 9.2532 -2.8870 -4.7153 20 1 10.2773 -2.5443 -4.6983 21 6 8.9624 -4.1855 -5.1105 22 7 7.7316 -4.5121 -5.4435 23 14 10.3179 -5.4696 -5.1697 24 1 10.4086 -6.1545 -3.8553 25 1 10.0100 -6.4660 -6.2270 26 1 11.6125 -4.8090 -5.4741 27 6 8.3890 -0.5823 -4.4774 28 6 8.0067 0.0637 -3.1410 29 8 6.7195 -0.4108 -2.7389 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1301 1.4426 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 0.6086 0.2512 2.4360 38 1 2.2209 1.0048 2.4200 39 1 1.5258 -1.7011 3.6508 40 1 1.8383 -0.1960 4.5496 41 1 3.8569 -1.6650 4.4572 42 1 4.1301 -0.1063 3.6399 43 1 3.3918 -2.7428 2.2876 44 1 4.9879 -1.9543 2.2486 45 1 5.6170 -0.8871 -0.3947 46 1 5.2166 -3.2761 -1.8473 47 1 4.5289 -1.9278 -2.7839 48 1 7.0736 -3.6295 -3.6091 49 1 6.1737 -2.3958 -4.5280 50 1 7.5283 -5.4195 -5.7193 51 1 9.4231 -0.3381 -4.7207 52 1 7.7299 -0.2157 -5.2644 53 1 8.7445 -0.2018 -2.3839 54 1 7.9764 1.1472 -3.2557 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035534278.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:15 Heat of formation + Delta-G solvation = -80.229794 kcal Electronic energy + Delta-G solvation = -31536.498692 eV Core-core repulsion = 27507.776070 eV Total energy + Delta-G solvation = -4028.722622 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.63723 -40.26602 -39.20749 -36.47632 -36.12875 -35.76063 -33.29278 -32.91342 -31.87571 -31.18509 -29.11687 -28.13362 -27.47167 -25.48361 -25.07618 -24.72040 -23.22077 -21.82627 -21.54590 -21.23105 -20.12689 -18.94081 -18.25972 -17.61624 -17.37231 -17.04781 -16.61655 -16.36293 -16.09858 -15.64568 -15.54764 -15.44919 -15.26819 -15.04218 -14.83970 -14.65232 -14.58158 -14.56252 -14.15838 -13.80039 -13.75351 -13.36499 -13.18181 -13.01271 -12.91215 -12.69981 -12.68385 -12.54784 -12.40209 -12.19460 -12.10433 -12.08248 -11.99146 -11.89412 -11.59410 -11.53935 -11.33553 -11.16924 -10.85968 -10.62025 -10.56045 -10.13093 -9.19159 -8.77846 -7.92811 -5.41179 1.45573 1.46826 1.55961 1.58935 2.02382 2.46280 2.75388 2.89767 3.21948 3.47553 3.64072 3.83258 3.89717 4.01249 4.03901 4.05540 4.08498 4.17461 4.24383 4.30126 4.32194 4.36804 4.43590 4.49417 4.57544 4.58575 4.65788 4.68457 4.75070 4.79851 4.80985 4.81376 4.92625 4.95258 4.98839 5.05018 5.05234 5.12221 5.19746 5.20764 5.24423 5.28079 5.36496 5.38526 5.50255 5.50560 5.58222 6.03153 6.20911 6.24153 6.30576 6.57121 7.03406 7.24817 7.72336 8.25942 9.12919 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017353 B = 0.002559 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.156404 B =10941.043957 C =11289.339040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.066 3.934 3 C -0.179 4.179 4 N -0.525 5.525 5 C 0.051 3.949 6 C -0.117 4.117 7 C -0.113 4.113 8 C -0.106 4.106 9 C 0.079 3.921 10 H 0.077 0.923 11 C 0.512 3.488 12 O -0.568 6.568 13 N -0.710 5.710 14 C 0.146 3.854 15 C 0.078 3.922 16 H 0.065 0.935 17 C 0.160 3.840 18 N -0.614 5.614 19 C -0.266 4.266 20 H 0.075 0.925 21 C -0.052 4.052 22 N -0.936 5.936 23 Si 0.971 3.029 24 H -0.283 1.283 25 H -0.297 1.297 26 H -0.266 1.266 27 C 0.101 3.899 28 C 0.057 3.943 29 O -0.389 6.389 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.413 0.587 46 H 0.072 0.928 47 H 0.054 0.946 48 H 0.067 0.933 49 H -0.002 1.002 50 H 0.251 0.749 51 H 0.073 0.927 52 H 0.014 0.986 53 H 0.055 0.945 54 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.017 13.933 20.285 26.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.042 4.042 3 C -0.238 4.238 4 N -0.251 5.251 5 C -0.076 4.076 6 C -0.155 4.155 7 C -0.150 4.150 8 C -0.145 4.145 9 C -0.032 4.032 10 H 0.094 0.906 11 C 0.299 3.701 12 O -0.446 6.446 13 N -0.362 5.362 14 C 0.021 3.979 15 C 0.019 3.981 16 H 0.083 0.917 17 C 0.033 3.967 18 N -0.339 5.339 19 C -0.395 4.395 20 H 0.093 0.907 21 C -0.247 4.247 22 N -0.582 5.582 23 Si 0.799 3.201 24 H -0.210 1.210 25 H -0.224 1.224 26 H -0.190 1.190 27 C -0.024 4.024 28 C -0.020 4.020 29 O -0.309 6.309 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.249 0.751 46 H 0.090 0.910 47 H 0.072 0.928 48 H 0.085 0.915 49 H 0.016 0.984 50 H 0.060 0.940 51 H 0.092 0.908 52 H 0.032 0.968 53 H 0.073 0.927 54 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.020 12.918 19.902 25.756 hybrid contribution 1.416 -0.397 -1.043 1.803 sum -8.603 12.521 18.859 24.217 Atomic orbital electron populations 1.21730 0.93155 1.01735 1.02395 1.21767 0.97030 0.92750 0.92662 1.22423 1.00990 0.97023 1.03334 1.61909 1.11402 1.48769 1.02981 1.22296 1.01752 0.95105 0.88469 1.21634 0.96025 1.00594 0.97229 1.21562 0.96556 1.00841 0.96088 1.21569 1.01280 0.98523 0.93093 1.21567 0.90901 0.98553 0.92223 0.90581 1.21075 0.80935 0.82041 0.86058 1.90690 1.48097 1.38885 1.66959 1.45867 1.18018 1.47359 1.24977 1.21035 0.94547 0.96407 0.85897 1.22729 0.95450 0.82529 0.97407 0.91686 1.21074 0.86763 0.97935 0.90903 1.44353 1.14759 1.01380 1.73400 1.19566 0.87986 0.93616 1.38380 0.90708 1.25871 0.98651 1.01175 0.99005 1.70179 1.20444 1.18928 1.48650 0.85209 0.79127 0.78722 0.77046 1.20951 1.22366 1.19015 1.21833 1.00009 0.84196 0.96357 1.23082 0.84406 0.99370 0.95173 1.87787 1.32741 1.21808 1.88531 0.91799 0.93486 0.90953 0.92782 0.93216 0.91798 0.90470 0.89510 0.93321 0.92264 0.89243 0.90189 0.90656 0.92444 0.90132 0.75072 0.90990 0.92798 0.91517 0.98440 0.93962 0.90850 0.96777 0.92662 0.86070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.14 71.98 0.66 -1.92 16 2 C 0.07 1.50 2.56 44.91 0.11 1.61 16 3 C -0.18 -3.15 8.44 71.98 0.61 -2.55 16 4 N -0.53 -11.32 4.20 -850.39 -3.57 -14.89 16 5 C 0.05 0.74 4.52 86.33 0.39 1.14 16 6 C -0.12 -1.47 6.09 30.65 0.19 -1.29 16 7 C -0.11 -1.40 6.00 30.68 0.18 -1.22 16 8 C -0.11 -1.94 5.36 30.65 0.16 -1.78 16 9 C 0.08 1.70 1.91 44.19 0.08 1.79 16 10 H 0.08 1.36 6.90 -2.39 -0.02 1.35 16 11 C 0.51 15.18 5.72 87.66 0.50 15.68 16 12 O -0.57 -22.05 15.39 -3.03 -0.05 -22.09 16 13 N -0.71 -19.99 5.45 -463.07 -2.52 -22.51 16 14 C 0.15 5.12 5.37 86.38 0.46 5.58 16 15 C 0.08 2.93 2.86 30.69 0.09 3.02 16 16 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 17 C 0.16 7.78 4.73 86.36 0.41 8.19 16 18 N -0.61 -30.71 3.05 -697.56 -2.13 -32.84 16 19 C -0.27 -14.37 9.65 84.03 0.81 -13.56 16 20 H 0.08 3.87 7.88 -2.91 -0.02 3.85 16 21 C -0.05 -2.86 4.96 84.86 0.42 -2.43 16 22 N -0.94 -55.59 11.12 21.65 0.24 -55.35 16 23 Si 0.97 44.33 29.59 68.60 2.03 46.36 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 27 C 0.10 4.07 6.73 86.35 0.58 4.65 16 28 C 0.06 1.79 6.98 72.08 0.50 2.30 16 29 O -0.39 -13.56 10.14 -148.98 -1.51 -15.07 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.09 6.45 -2.39 -0.02 1.08 16 33 H 0.05 1.65 5.78 -2.39 -0.01 1.64 16 34 H 0.05 0.91 6.84 -2.38 -0.02 0.90 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 1.06 6.46 -2.38 -0.02 1.05 16 37 H 0.09 1.17 6.24 -2.39 -0.01 1.15 16 38 H 0.05 0.62 6.57 -2.39 -0.02 0.60 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.41 9.46 8.35 -92.71 -0.77 8.69 16 46 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 47 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 48 H 0.07 3.63 6.13 -2.39 -0.01 3.62 16 49 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 50 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 51 H 0.07 2.74 7.96 -2.39 -0.02 2.72 16 52 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 53 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 54 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -70.31 405.44 -1.24 -71.55 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.10 Total: 25.62 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 6.17 Total: 19.21 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -7.98 Total: -125.59 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -1.56 Total: -37.17 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -70.31 -1.24 -71.55 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035534278.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.677 kcal (2) G-P(sol) polarization free energy of solvation -70.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds