Wall clock time and date at job start Wed Apr 1 2020 00:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47535 * 2 1 4 4 N 1.46904 * 109.47265 * 120.00533 * 2 1 3 5 5 C 1.46843 * 110.99962 * 179.97438 * 4 2 1 6 6 C 1.53045 * 109.52080 * 185.83814 * 5 4 2 7 7 C 1.53117 * 109.27411 * 300.81813 * 6 5 4 8 8 C 1.50703 * 109.52057 * 177.55943 * 7 6 5 9 9 O 1.21286 * 120.00172 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00252 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00211 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47225 * 180.02562 * 11 10 8 13 13 H 1.09005 * 109.51420 * 59.89861 * 12 11 10 14 14 C 1.53293 * 109.51291 * 179.97438 * 12 11 10 15 15 N 1.47153 * 108.38556 * 172.22725 * 14 12 11 16 16 C 1.36941 * 120.98332 * 129.44450 * 15 14 12 17 17 H 1.08000 * 119.99517 * 333.75337 * 16 15 14 18 18 C 1.38811 * 119.99747 * 154.03633 * 16 15 14 19 19 N 1.31610 * 120.00320 * 342.93818 * 18 16 15 20 20 Si 1.86803 * 119.99513 * 162.93545 * 18 16 15 21 21 H 1.48498 * 109.47393 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46872 * 119.99937 * 20 18 16 23 23 H 1.48499 * 109.47206 * 239.99531 * 20 18 16 24 24 C 1.47157 * 118.03463 * 309.71495 * 15 14 12 25 25 C 1.52881 * 108.60432 * 50.22532 * 24 15 14 26 26 O 1.42959 * 109.29983 * 307.93401 * 25 24 15 27 27 C 1.53124 * 109.16308 * 57.65950 * 7 6 5 28 28 C 1.46844 * 110.99484 * 304.20698 * 4 2 1 29 29 H 1.09000 * 109.46940 * 300.00043 * 1 2 3 30 30 H 1.09003 * 109.47100 * 59.99413 * 1 2 3 31 31 H 1.08997 * 109.47735 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46940 * 239.99957 * 2 1 3 33 33 H 1.08999 * 109.46987 * 300.00653 * 3 2 1 34 34 H 1.09000 * 109.47042 * 60.00019 * 3 2 1 35 35 H 1.08997 * 109.47079 * 180.02562 * 3 2 1 36 36 H 1.08998 * 109.46613 * 65.82079 * 5 4 2 37 37 H 1.08999 * 109.45388 * 305.84262 * 5 4 2 38 38 H 1.08997 * 109.49919 * 180.88369 * 6 5 4 39 39 H 1.08996 * 109.53716 * 60.78104 * 6 5 4 40 40 H 1.08997 * 109.53098 * 297.68447 * 7 6 5 41 41 H 0.97001 * 120.00112 * 0.02562 * 10 8 7 42 42 H 1.09003 * 109.47277 * 59.99745 * 11 10 8 43 43 H 1.09002 * 109.46842 * 299.99797 * 11 10 8 44 44 H 1.09002 * 109.68517 * 52.50220 * 14 12 11 45 45 H 1.09002 * 109.68529 * 291.94728 * 14 12 11 46 46 H 0.96999 * 120.00657 * 180.02562 * 19 18 16 47 47 H 1.08998 * 109.68133 * 170.00728 * 24 15 14 48 48 H 1.09002 * 109.67954 * 290.56081 * 24 15 14 49 49 H 1.09007 * 109.57554 * 187.92400 * 25 24 15 50 50 H 1.08994 * 109.36528 * 67.81911 * 25 24 15 51 51 H 1.08998 * 109.50316 * 62.28273 * 27 7 6 52 52 H 1.08994 * 109.50149 * 182.40330 * 27 7 6 53 53 H 1.09003 * 109.46487 * 294.17071 * 28 4 2 54 54 H 1.08999 * 109.46880 * 54.15376 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.4876 -0.7127 1.2330 6 6 3.9605 -1.5639 2.4137 7 6 3.4096 -0.9740 3.7148 8 6 3.8222 -1.8420 4.8756 9 8 4.4915 -2.8348 4.6827 10 7 3.4483 -1.5144 6.1284 11 6 3.8499 -2.3578 7.2569 12 6 3.2988 -1.7675 8.5563 13 1 2.2109 -1.7231 8.5035 14 6 3.7179 -2.6497 9.7378 15 7 3.3395 -1.9661 10.9847 16 6 2.6289 -2.6168 11.9578 17 1 1.9853 -3.4433 11.6949 18 6 2.7312 -2.2103 13.2811 19 7 3.7343 -1.4468 13.6593 20 14 1.4451 -2.7470 14.5250 21 1 0.4290 -3.5953 13.8519 22 1 2.0986 -3.5240 15.6087 23 1 0.7857 -1.5488 15.1036 24 6 3.7421 -0.5606 11.1526 25 6 3.3265 0.2182 9.9044 26 8 3.8234 -0.4507 8.7428 27 6 1.8815 -0.9194 3.6345 28 6 1.4684 -0.0873 2.4184 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 3.1301 1.4423 -0.0005 36 1 3.8623 0.3046 1.3456 37 1 3.8662 -1.1385 0.3037 38 1 5.0500 -1.5658 2.4476 39 1 3.5983 -2.5851 2.2950 40 1 3.8041 0.0324 3.8543 41 1 2.9133 -0.7201 6.2828 42 1 4.9378 -2.4007 7.3095 43 1 3.4529 -3.3635 7.1181 44 1 4.7968 -2.8038 9.7164 45 1 3.2080 -3.6112 9.6771 46 1 3.8060 -1.1630 14.5841 47 1 3.2483 -0.1394 12.0282 48 1 4.8235 -0.5008 11.2760 49 1 3.7391 1.2262 9.9486 50 1 2.2388 0.2709 9.8568 51 1 1.4860 -1.9302 3.5348 52 1 1.4857 -0.4609 4.5407 53 1 1.8523 0.9272 2.5258 54 1 0.3810 -0.0588 2.3501 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035562019.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:14 Heat of formation + Delta-G solvation = -85.582924 kcal Electronic energy + Delta-G solvation = -30490.008953 eV Core-core repulsion = 26461.054202 eV Total energy + Delta-G solvation = -4028.954751 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.36298 -40.27689 -39.64957 -36.54023 -35.92577 -35.76034 -33.39829 -32.56487 -31.81380 -31.25825 -29.27008 -28.07960 -27.43253 -25.74974 -24.92571 -24.06931 -23.40250 -22.20546 -21.56322 -20.87036 -20.11541 -18.92058 -18.27992 -17.52949 -17.23375 -17.00037 -16.70121 -16.29467 -16.12540 -15.89264 -15.55531 -15.49765 -15.22170 -15.03883 -14.93768 -14.83365 -14.54841 -14.36409 -14.21759 -13.64612 -13.53570 -13.23376 -13.14236 -13.02263 -12.88266 -12.74188 -12.69246 -12.51117 -12.33692 -12.18826 -12.17508 -12.06035 -11.92418 -11.88311 -11.65516 -11.54451 -11.35661 -11.21567 -10.82764 -10.72756 -10.54289 -10.09076 -9.13620 -8.77095 -7.92730 -5.40057 1.45346 1.47265 1.57971 1.65140 2.15964 2.47619 2.77226 2.97335 3.22407 3.47721 3.61772 3.77672 3.85040 3.98221 4.02290 4.05528 4.18133 4.24523 4.30129 4.32930 4.41420 4.43428 4.47931 4.51150 4.54755 4.62670 4.67631 4.70841 4.74046 4.76867 4.80289 4.85321 4.89303 4.91126 4.95467 5.04063 5.05976 5.09043 5.20116 5.22413 5.23257 5.32811 5.37908 5.41626 5.47308 5.54358 5.60201 6.22832 6.24305 6.25962 6.31756 6.57094 7.04801 7.25821 7.72776 8.26258 9.13594 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.022768 B = 0.001965 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.506459 B =14246.109974 C =14582.288695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 C -0.184 4.184 4 N -0.545 5.545 5 C 0.061 3.939 6 C -0.092 4.092 7 C -0.099 4.099 8 C 0.515 3.485 9 O -0.586 6.586 10 N -0.710 5.710 11 C 0.140 3.860 12 C 0.081 3.919 13 H 0.071 0.929 14 C 0.116 3.884 15 N -0.613 5.613 16 C -0.265 4.265 17 H 0.073 0.927 18 C -0.052 4.052 19 N -0.936 5.936 20 Si 0.972 3.028 21 H -0.265 1.265 22 H -0.294 1.294 23 H -0.287 1.287 24 C 0.142 3.858 25 C 0.055 3.945 26 O -0.388 6.388 27 C -0.103 4.103 28 C 0.053 3.947 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.111 0.889 41 H 0.414 0.586 42 H 0.058 0.942 43 H 0.085 0.915 44 H 0.016 0.984 45 H 0.071 0.929 46 H 0.252 0.748 47 H 0.068 0.932 48 H -0.003 1.003 49 H 0.110 0.890 50 H 0.052 0.948 51 H 0.062 0.938 52 H 0.087 0.913 53 H 0.046 0.954 54 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.562 7.946 -27.649 29.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.242 4.242 4 N -0.270 5.270 5 C -0.067 4.067 6 C -0.130 4.130 7 C -0.120 4.120 8 C 0.302 3.698 9 O -0.467 6.467 10 N -0.362 5.362 11 C 0.016 3.984 12 C 0.021 3.979 13 H 0.088 0.912 14 C -0.011 4.011 15 N -0.337 5.337 16 C -0.395 4.395 17 H 0.090 0.910 18 C -0.247 4.247 19 N -0.582 5.582 20 Si 0.799 3.201 21 H -0.189 1.189 22 H -0.221 1.221 23 H -0.213 1.213 24 C 0.016 3.984 25 C -0.023 4.023 26 O -0.308 6.308 27 C -0.141 4.141 28 C -0.074 4.074 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.129 0.871 41 H 0.250 0.750 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.034 0.966 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.086 0.914 48 H 0.015 0.985 49 H 0.128 0.872 50 H 0.070 0.930 51 H 0.081 0.919 52 H 0.106 0.894 53 H 0.064 0.936 54 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.099 6.874 -27.754 29.236 hybrid contribution -0.068 0.570 1.685 1.780 sum -6.167 7.444 -26.070 27.804 Atomic orbital electron populations 1.21897 0.93765 1.02206 1.02395 1.21741 0.96153 0.92628 0.92814 1.22444 1.01412 0.97639 1.02739 1.62175 1.07926 1.54324 1.02541 1.22050 0.87621 0.98623 0.98377 1.21333 1.00038 0.99509 0.92163 1.21390 0.98661 0.99694 0.92236 1.21195 0.78478 0.85544 0.84534 1.90679 1.40764 1.29586 1.85634 1.45848 1.55203 1.29530 1.05615 1.21164 0.99876 0.94253 0.83140 1.22626 0.97691 0.84032 0.93520 0.91152 1.21609 0.97289 0.95742 0.86422 1.44338 1.64407 1.08477 1.16488 1.19580 1.17999 1.14909 0.86977 0.90959 1.25840 0.99191 1.00896 0.98767 1.70194 1.30387 1.40975 1.16633 0.85146 0.78834 0.77466 0.78609 1.18904 1.22128 1.21332 1.21242 0.96046 0.84450 0.96648 1.23080 0.98350 0.95954 0.84881 1.87795 1.69918 1.28049 1.45001 1.21577 0.91804 1.01608 0.99101 1.22163 1.00889 0.95767 0.88601 0.92164 0.91228 0.92568 0.90030 0.91314 0.92463 0.92623 0.93619 0.90108 0.91647 0.92394 0.87110 0.74965 0.92361 0.89697 0.96634 0.91035 0.93924 0.91414 0.98481 0.87228 0.92952 0.91919 0.89437 0.93609 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.84 71.98 0.64 -0.74 16 2 C 0.07 0.81 3.02 44.91 0.14 0.95 16 3 C -0.18 -1.69 8.51 71.98 0.61 -1.07 16 4 N -0.54 -7.53 4.68 -871.13 -4.08 -11.61 16 5 C 0.06 0.86 4.89 86.33 0.42 1.29 16 6 C -0.09 -1.73 4.68 30.65 0.14 -1.59 16 7 C -0.10 -1.76 2.59 -11.46 -0.03 -1.79 16 8 C 0.51 13.16 7.15 87.66 0.63 13.79 16 9 O -0.59 -20.06 15.98 -3.05 -0.05 -20.10 16 10 N -0.71 -17.11 5.36 -463.05 -2.48 -19.59 16 11 C 0.14 4.07 5.37 86.38 0.46 4.53 16 12 C 0.08 2.65 2.86 30.69 0.09 2.74 16 13 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 14 C 0.12 4.77 6.03 86.35 0.52 5.29 16 15 N -0.61 -30.53 3.05 -698.32 -2.13 -32.66 16 16 C -0.26 -14.32 9.65 84.03 0.81 -13.51 16 17 H 0.07 3.78 7.88 -2.91 -0.02 3.75 16 18 C -0.05 -2.83 4.94 84.86 0.42 -2.41 16 19 N -0.94 -54.76 11.15 21.65 0.24 -54.52 16 20 Si 0.97 43.94 29.59 68.60 2.03 45.97 16 21 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 23 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 24 C 0.14 6.75 5.42 86.21 0.47 7.21 16 25 C 0.05 1.97 6.97 71.94 0.50 2.47 16 26 O -0.39 -13.43 10.14 -148.98 -1.51 -14.94 16 27 C -0.10 -1.50 5.26 30.65 0.16 -1.34 16 28 C 0.05 0.66 4.67 86.33 0.40 1.06 16 29 H 0.06 0.54 6.22 -2.39 -0.01 0.53 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.55 6.63 -2.39 -0.02 0.53 16 35 H 0.05 0.54 6.54 -2.39 -0.02 0.53 16 36 H 0.05 0.58 6.63 -2.39 -0.02 0.56 16 37 H 0.08 1.07 8.12 -2.39 -0.02 1.05 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.06 1.34 8.04 -2.39 -0.02 1.32 16 40 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.41 8.14 7.85 -92.71 -0.73 7.42 16 42 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.07 2.79 7.96 -2.39 -0.02 2.77 16 46 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 47 H 0.07 3.57 6.15 -2.39 -0.01 3.55 16 48 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 49 H 0.11 3.32 8.14 -2.38 -0.02 3.30 16 50 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 51 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.09 1.02 7.67 -2.39 -0.02 1.00 16 53 H 0.05 0.51 6.71 -2.39 -0.02 0.49 16 54 H 0.09 1.00 5.90 -2.39 -0.01 0.99 16 Total: -1.00 -68.17 406.71 -1.45 -69.62 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.14 Total: 20.94 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: 6.38 Total: 16.87 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -8.45 Total: -118.37 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -1.56 Total: -35.04 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -68.17 -1.45 -69.62 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035562019.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.958 kcal (2) G-P(sol) polarization free energy of solvation -68.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds