Wall clock time and date at job start Wed Apr 1 2020 00:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47160 * 2 1 4 4 N 1.46904 * 109.47117 * 119.99999 * 2 1 3 5 5 C 1.46846 * 110.99928 * 179.97438 * 4 2 1 6 6 C 1.53036 * 109.52277 * 185.83368 * 5 4 2 7 7 C 1.53117 * 109.28240 * 300.82558 * 6 5 4 8 8 C 1.50699 * 109.52455 * 177.55628 * 7 6 5 9 9 O 1.21281 * 119.99737 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00087 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00377 * 179.72473 * 10 8 7 12 12 C 1.52997 * 109.47431 * 180.27390 * 11 10 8 13 13 H 1.09000 * 109.51200 * 304.99690 * 12 11 10 14 14 C 1.53293 * 109.51141 * 184.89938 * 12 11 10 15 15 N 1.47152 * 108.38424 * 187.77492 * 14 12 11 16 16 C 1.36938 * 120.98336 * 230.55649 * 15 14 12 17 17 H 1.08000 * 120.00018 * 26.23543 * 16 15 14 18 18 C 1.38813 * 120.00295 * 206.23277 * 16 15 14 19 19 N 1.31623 * 119.99605 * 16.91957 * 18 16 15 20 20 Si 1.86790 * 120.00160 * 196.91510 * 18 16 15 21 21 H 1.48504 * 109.47579 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47121 * 120.00175 * 20 18 16 23 23 H 1.48500 * 109.47500 * 240.00288 * 20 18 16 24 24 C 1.47145 * 118.03664 * 50.53448 * 15 14 12 25 25 C 1.53292 * 108.38554 * 309.46654 * 24 15 14 26 26 O 1.42959 * 109.26868 * 52.27759 * 25 24 15 27 27 C 1.53120 * 109.15945 * 57.64948 * 7 6 5 28 28 C 1.46845 * 110.99423 * 304.20694 * 4 2 1 29 29 H 1.08994 * 109.47328 * 300.00442 * 1 2 3 30 30 H 1.09008 * 109.46872 * 60.00290 * 1 2 3 31 31 H 1.08993 * 109.46914 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47178 * 239.99883 * 2 1 3 33 33 H 1.08994 * 109.47361 * 59.99578 * 3 2 1 34 34 H 1.09000 * 109.47217 * 180.02562 * 3 2 1 35 35 H 1.09008 * 109.46991 * 299.99636 * 3 2 1 36 36 H 1.09005 * 109.45923 * 65.82147 * 5 4 2 37 37 H 1.08999 * 109.45566 * 305.84811 * 5 4 2 38 38 H 1.09001 * 109.50252 * 180.87697 * 6 5 4 39 39 H 1.09003 * 109.53036 * 60.78511 * 6 5 4 40 40 H 1.09001 * 109.52095 * 297.68137 * 7 6 5 41 41 H 0.97004 * 120.00142 * 359.97438 * 10 8 7 42 42 H 1.09001 * 109.46623 * 300.27939 * 11 10 8 43 43 H 1.09004 * 109.46571 * 60.27190 * 11 10 8 44 44 H 1.08996 * 109.68215 * 307.49973 * 14 12 11 45 45 H 1.09004 * 109.68146 * 68.01351 * 14 12 11 46 46 H 0.97000 * 119.99843 * 179.97438 * 19 18 16 47 47 H 1.08997 * 109.68136 * 69.18634 * 24 15 14 48 48 H 1.08998 * 109.68213 * 189.70576 * 24 15 14 49 49 H 1.09005 * 109.51673 * 172.22547 * 25 24 15 50 50 H 1.09006 * 109.51585 * 292.37564 * 25 24 15 51 51 H 1.09001 * 109.50283 * 62.29197 * 27 7 6 52 52 H 1.09010 * 109.49899 * 182.40857 * 27 7 6 53 53 H 1.08998 * 109.46840 * 294.17313 * 28 4 2 54 54 H 1.09004 * 109.46339 * 54.15053 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4876 -0.7126 1.2331 6 6 3.9605 -1.5636 2.4138 7 6 3.4096 -0.9737 3.7150 8 6 3.8222 -1.8416 4.8758 9 8 4.4908 -2.8349 4.6828 10 7 3.4482 -1.5139 6.1285 11 6 3.8442 -2.3609 7.2564 12 6 3.2890 -1.7730 8.5552 13 1 3.6145 -0.7375 8.6546 14 6 3.8036 -2.5880 9.7472 15 7 3.1118 -2.1238 10.9602 16 6 3.8139 -1.7839 12.0857 17 1 4.8354 -1.4433 12.0026 18 6 3.2126 -1.8769 13.3334 19 7 2.1157 -2.5887 13.4838 20 14 3.9601 -0.9920 14.7987 21 1 5.1818 -0.2657 14.3681 22 1 2.9765 -0.0238 15.3468 23 1 4.3162 -1.9825 15.8463 24 6 1.6434 -2.0351 10.9278 25 6 1.2340 -1.2471 9.6783 26 8 1.8605 -1.8243 8.5303 27 6 1.8815 -0.9191 3.6346 28 6 1.4684 -0.0871 2.4184 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 3.8623 0.3048 1.3456 37 1 3.8663 -1.1384 0.3038 38 1 5.0500 -1.5656 2.4477 39 1 3.5983 -2.5848 2.2952 40 1 3.8042 0.0328 3.8543 41 1 2.9138 -0.7193 6.2829 42 1 3.4468 -3.3657 7.1132 43 1 4.9319 -2.4050 7.3132 44 1 3.5938 -3.6455 9.5869 45 1 4.8779 -2.4396 9.8570 46 1 1.6957 -2.6540 14.3557 47 1 1.2160 -3.0369 10.8863 48 1 1.2870 -1.5206 11.8202 49 1 0.1511 -1.2875 9.5609 50 1 1.5512 -0.2094 9.7821 51 1 1.4860 -1.9300 3.5349 52 1 1.4856 -0.4605 4.5408 53 1 1.8522 0.9275 2.5257 54 1 0.3809 -0.0586 2.3500 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035562020.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:17 Heat of formation + Delta-G solvation = -85.666831 kcal Electronic energy + Delta-G solvation = -30519.045242 eV Core-core repulsion = 26490.086853 eV Total energy + Delta-G solvation = -4028.958389 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.36329 -40.26583 -39.64850 -36.53643 -35.92625 -35.77168 -33.39283 -32.55427 -31.80841 -31.25618 -29.24676 -28.07780 -27.43355 -25.74545 -24.93165 -24.06721 -23.40364 -22.21675 -21.57999 -20.85847 -20.11184 -18.91796 -18.27171 -17.53144 -17.23992 -16.99804 -16.71063 -16.30861 -16.12038 -15.82766 -15.55252 -15.47341 -15.30161 -15.04657 -14.93922 -14.72488 -14.61018 -14.36279 -14.21747 -13.64625 -13.52591 -13.23270 -13.13902 -13.03008 -12.87558 -12.74362 -12.69211 -12.51488 -12.33702 -12.19044 -12.17580 -12.06006 -11.92374 -11.88231 -11.65391 -11.54299 -11.34917 -11.21280 -10.82675 -10.72991 -10.53978 -10.09870 -9.12883 -8.76966 -7.92589 -5.40076 1.45358 1.47214 1.57932 1.64517 2.16669 2.47528 2.77428 2.97600 3.22486 3.47769 3.61735 3.77294 3.86126 3.98083 4.02228 4.05775 4.18119 4.24532 4.29629 4.32894 4.41242 4.43509 4.48137 4.51934 4.54397 4.61315 4.67178 4.70643 4.74595 4.76574 4.80584 4.85399 4.89519 4.91123 4.95562 5.04316 5.06048 5.09206 5.20907 5.22715 5.23483 5.32968 5.37895 5.41463 5.47502 5.54598 5.60411 6.23518 6.24739 6.26352 6.32206 6.56472 7.04838 7.25526 7.72759 8.26377 9.13598 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024775 B = 0.001970 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.889563 B =14209.747044 C =14691.963682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.075 3.925 3 C -0.183 4.183 4 N -0.547 5.547 5 C 0.061 3.939 6 C -0.092 4.092 7 C -0.098 4.098 8 C 0.515 3.485 9 O -0.586 6.586 10 N -0.711 5.711 11 C 0.140 3.860 12 C 0.081 3.919 13 H 0.071 0.929 14 C 0.116 3.884 15 N -0.613 5.613 16 C -0.265 4.265 17 H 0.073 0.927 18 C -0.052 4.052 19 N -0.936 5.936 20 Si 0.972 3.028 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.294 1.294 24 C 0.142 3.858 25 C 0.055 3.945 26 O -0.389 6.389 27 C -0.103 4.103 28 C 0.055 3.945 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.116 0.884 41 H 0.414 0.586 42 H 0.057 0.943 43 H 0.086 0.914 44 H 0.015 0.985 45 H 0.072 0.928 46 H 0.252 0.748 47 H -0.003 1.003 48 H 0.068 0.932 49 H 0.109 0.891 50 H 0.052 0.948 51 H 0.057 0.943 52 H 0.086 0.914 53 H 0.048 0.952 54 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.098 11.083 -27.179 29.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.242 4.242 4 N -0.272 5.272 5 C -0.066 4.066 6 C -0.131 4.131 7 C -0.119 4.119 8 C 0.302 3.698 9 O -0.466 6.466 10 N -0.363 5.363 11 C 0.016 3.984 12 C 0.022 3.978 13 H 0.089 0.911 14 C -0.011 4.011 15 N -0.337 5.337 16 C -0.395 4.395 17 H 0.091 0.909 18 C -0.247 4.247 19 N -0.582 5.582 20 Si 0.800 3.200 21 H -0.189 1.189 22 H -0.214 1.214 23 H -0.221 1.221 24 C 0.016 3.984 25 C -0.023 4.023 26 O -0.308 6.308 27 C -0.141 4.141 28 C -0.073 4.073 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.134 0.866 41 H 0.250 0.750 42 H 0.076 0.924 43 H 0.104 0.896 44 H 0.033 0.967 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.015 0.985 48 H 0.086 0.914 49 H 0.127 0.873 50 H 0.071 0.929 51 H 0.076 0.924 52 H 0.104 0.896 53 H 0.066 0.934 54 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.959 9.783 -27.322 29.087 hybrid contribution 0.429 0.901 1.748 2.013 sum -1.530 10.684 -25.574 27.758 Atomic orbital electron populations 1.21899 0.93869 1.02146 1.02392 1.21740 0.96086 0.92706 0.92787 1.22442 1.01460 0.97537 1.02748 1.62166 1.08046 1.54409 1.02533 1.22054 0.87524 0.98703 0.98365 1.21339 1.00158 0.99394 0.92180 1.21391 0.98407 0.99880 0.92224 1.21202 0.78483 0.85567 0.84510 1.90678 1.40955 1.29448 1.85563 1.45872 1.55267 1.29324 1.05806 1.21151 0.99553 0.94324 0.83418 1.22618 0.81952 0.99424 0.93844 0.91131 1.21607 0.97099 0.95458 0.86910 1.44354 1.02320 1.76815 1.10217 1.19588 0.98088 1.36910 0.84889 0.90928 1.25852 0.99069 0.99688 1.00128 1.70202 1.23091 1.41550 1.23369 0.85137 0.78076 0.77814 0.78970 1.18897 1.21354 1.22124 1.21325 0.83644 0.96535 0.96862 1.23153 0.97856 0.95951 0.85321 1.87808 1.18686 1.82282 1.42008 1.21569 0.92067 1.01396 0.99102 1.22149 1.00823 0.95785 0.88536 0.92186 0.91191 0.92694 0.90032 0.92441 0.92508 0.91321 0.93403 0.90121 0.91347 0.92702 0.86641 0.74992 0.92410 0.89641 0.96671 0.91005 0.93926 0.98463 0.91379 0.87297 0.92923 0.92427 0.89568 0.93386 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.84 71.98 0.64 -0.82 16 2 C 0.07 0.83 3.03 44.92 0.14 0.96 16 3 C -0.18 -1.66 8.51 71.98 0.61 -1.04 16 4 N -0.55 -7.76 4.68 -871.10 -4.08 -11.84 16 5 C 0.06 0.86 4.89 86.33 0.42 1.28 16 6 C -0.09 -1.72 4.68 30.65 0.14 -1.58 16 7 C -0.10 -1.73 2.59 -11.46 -0.03 -1.76 16 8 C 0.51 13.11 7.15 87.66 0.63 13.74 16 9 O -0.59 -20.04 15.98 -3.03 -0.05 -20.09 16 10 N -0.71 -17.02 5.41 -463.06 -2.51 -19.53 16 11 C 0.14 4.07 5.34 86.38 0.46 4.53 16 12 C 0.08 2.66 2.81 30.69 0.09 2.75 16 13 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 14 C 0.12 4.77 6.02 86.35 0.52 5.29 16 15 N -0.61 -30.53 3.05 -697.57 -2.13 -32.66 16 16 C -0.27 -14.31 9.65 84.03 0.81 -13.50 16 17 H 0.07 3.78 7.88 -2.91 -0.02 3.76 16 18 C -0.05 -2.86 4.94 84.86 0.42 -2.44 16 19 N -0.94 -54.79 11.14 21.65 0.24 -54.55 16 20 Si 0.97 43.92 29.59 68.60 2.03 45.95 16 21 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 22 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 24 C 0.14 6.77 5.45 86.35 0.47 7.24 16 25 C 0.05 1.97 6.98 72.08 0.50 2.47 16 26 O -0.39 -13.53 10.34 -148.98 -1.54 -15.07 16 27 C -0.10 -1.61 5.26 30.65 0.16 -1.45 16 28 C 0.05 0.70 4.68 86.33 0.40 1.10 16 29 H 0.06 0.58 6.22 -2.39 -0.01 0.56 16 30 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 0.54 6.63 -2.39 -0.02 0.52 16 34 H 0.06 0.53 6.54 -2.39 -0.02 0.52 16 35 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.05 0.57 6.63 -2.38 -0.02 0.56 16 37 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.05 1.30 8.04 -2.39 -0.02 1.28 16 40 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.41 8.00 7.96 -92.71 -0.74 7.27 16 42 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 44 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.07 2.80 7.96 -2.39 -0.02 2.78 16 46 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 47 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 48 H 0.07 3.59 6.14 -2.39 -0.01 3.58 16 49 H 0.11 3.33 8.14 -2.38 -0.02 3.31 16 50 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 51 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 52 H 0.09 1.14 7.67 -2.38 -0.02 1.12 16 53 H 0.05 0.53 6.71 -2.39 -0.02 0.51 16 54 H 0.09 1.06 5.90 -2.39 -0.01 1.05 16 Total: -1.00 -68.43 407.02 -1.51 -69.94 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.13 Total: 21.08 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 6.38 Total: 16.77 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -8.47 Total: -118.58 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -1.59 Total: -35.16 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -68.43 -1.51 -69.94 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035562020.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.728 kcal (2) G-P(sol) polarization free energy of solvation -68.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds