Wall clock time and date at job start Wed Apr 1 2020 00:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47198 * 2 1 4 4 N 1.46897 * 109.46817 * 120.00155 * 2 1 3 5 5 C 1.46855 * 110.99790 * 174.99443 * 4 2 1 6 6 C 1.53041 * 109.52197 * 185.83753 * 5 4 2 7 7 C 1.53120 * 109.27988 * 300.82668 * 6 5 4 8 8 C 1.50704 * 109.51923 * 177.56191 * 7 6 5 9 9 O 1.21284 * 120.00089 * 342.22715 * 8 7 6 10 10 N 1.34777 * 119.99779 * 162.23095 * 8 7 6 11 11 C 1.46495 * 119.99781 * 184.18299 * 10 8 7 12 12 C 1.46497 * 119.99890 * 4.18890 * 10 8 7 13 13 H 1.09001 * 110.89133 * 9.44908 * 12 10 8 14 14 C 1.54910 * 111.03742 * 133.35305 * 12 10 8 15 15 N 1.47422 * 104.83391 * 155.09814 * 14 12 10 16 16 C 1.36935 * 125.65068 * 155.83967 * 15 14 12 17 17 H 1.08000 * 119.99714 * 7.86405 * 16 15 14 18 18 C 1.38811 * 120.00293 * 187.86747 * 16 15 14 19 19 N 1.31622 * 119.99668 * 9.38859 * 18 16 15 20 20 Si 1.86796 * 120.00454 * 189.38880 * 18 16 15 21 21 H 1.48501 * 109.47101 * 94.94572 * 20 18 16 22 22 H 1.48494 * 109.47632 * 214.94874 * 20 18 16 23 23 H 1.48506 * 109.47078 * 334.95208 * 20 18 16 24 24 C 1.47318 * 108.73644 * 335.71170 * 15 14 12 25 25 C 1.54324 * 107.11742 * 1.30559 * 24 15 14 26 26 H 1.09006 * 110.72379 * 263.52192 * 25 24 15 27 27 O 1.42906 * 110.72248 * 140.42509 * 25 24 15 28 28 C 1.53108 * 109.16157 * 57.65403 * 7 6 5 29 29 C 1.46839 * 111.00236 * 299.20811 * 4 2 1 30 30 H 1.09002 * 109.46663 * 300.00106 * 1 2 3 31 31 H 1.08996 * 109.46904 * 59.99657 * 1 2 3 32 32 H 1.08997 * 109.47179 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46663 * 239.99894 * 2 1 3 34 34 H 1.09002 * 109.46941 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47473 * 299.99995 * 3 2 1 36 36 H 1.09007 * 109.46982 * 60.00244 * 3 2 1 37 37 H 1.08996 * 109.45603 * 65.82606 * 5 4 2 38 38 H 1.08997 * 109.45497 * 305.85415 * 5 4 2 39 39 H 1.08999 * 109.50022 * 180.88172 * 6 5 4 40 40 H 1.08996 * 109.49797 * 60.76832 * 6 5 4 41 41 H 1.08999 * 109.51708 * 297.68448 * 7 6 5 42 42 H 1.08997 * 109.47738 * 271.84928 * 11 10 8 43 43 H 1.09004 * 109.47208 * 31.85434 * 11 10 8 44 44 H 1.09000 * 109.47158 * 151.85047 * 11 10 8 45 45 H 1.09005 * 110.36698 * 273.93784 * 14 12 10 46 46 H 1.08998 * 110.36719 * 36.14257 * 14 12 10 47 47 H 0.97004 * 119.99629 * 180.02562 * 19 18 16 48 48 H 1.08996 * 110.06862 * 241.87655 * 24 15 14 49 49 H 1.08998 * 109.85047 * 120.61176 * 24 15 14 50 50 H 0.96705 * 113.99599 * 63.84221 * 27 25 24 51 51 H 1.08998 * 109.50852 * 62.28449 * 28 7 6 52 52 H 1.09000 * 109.50492 * 182.40585 * 28 7 6 53 53 H 1.08999 * 109.46129 * 294.17784 * 29 4 2 54 54 H 1.09000 * 109.46735 * 54.14779 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4828 -0.8166 1.1751 6 6 3.9437 -1.6666 2.3613 7 6 3.4906 -1.0033 3.6649 8 6 3.8896 -1.8664 4.8341 9 8 4.1779 -3.0311 4.6577 10 7 3.9259 -1.3438 6.0759 11 6 4.4013 -2.1559 7.1987 12 6 3.4899 0.0362 6.3029 13 1 3.0144 0.4452 5.4115 14 6 2.5451 0.1266 7.5272 15 7 2.6787 1.5147 8.0054 16 6 1.7445 2.2013 8.7341 17 1 0.8726 1.6892 9.1135 18 6 1.9180 3.5555 8.9850 19 7 2.8754 4.2206 8.3739 20 14 0.7928 4.4339 10.1898 21 1 1.4306 4.4647 11.5305 22 1 0.5553 5.8233 9.7226 23 1 -0.5022 3.7119 10.2743 24 6 3.9850 2.0407 7.5725 25 6 4.6761 0.9265 6.7586 26 1 5.3642 0.3603 7.3865 27 8 5.3596 1.4747 5.6297 28 6 1.9682 -0.8420 3.6439 29 6 1.5644 -0.0159 2.4205 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6768 1.9563 0.8901 37 1 3.9323 0.1741 1.2417 38 1 3.7912 -1.2936 0.2448 39 1 5.0308 -1.7454 2.3518 40 1 3.5055 -2.6618 2.2878 41 1 3.9604 -0.0242 3.7578 42 1 3.5663 -2.7129 7.6236 43 1 5.1616 -2.8532 6.8465 44 1 4.8300 -1.5059 7.9615 45 1 1.5163 -0.0742 7.2282 46 1 2.8582 -0.5747 8.3007 47 1 2.9969 5.1668 8.5495 48 1 4.5919 2.2960 8.4412 49 1 3.8405 2.9214 6.9469 50 1 6.0867 2.0689 5.8606 51 1 1.4988 -1.8243 3.5906 52 1 1.6437 -0.3317 4.5508 53 1 2.0229 0.9711 2.4813 54 1 0.4797 0.0888 2.3949 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047584261.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:10 Heat of formation + Delta-G solvation = -72.221114 kcal Electronic energy + Delta-G solvation = -32368.525363 eV Core-core repulsion = 28340.150024 eV Total energy + Delta-G solvation = -4028.375339 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.73734 -40.16259 -39.39613 -36.69185 -36.22333 -35.97821 -33.68505 -32.14541 -31.42922 -30.29125 -28.95963 -28.42396 -28.07007 -26.32750 -25.39996 -24.22008 -22.48563 -22.27746 -21.70296 -20.42310 -19.81460 -18.99699 -18.73169 -17.72601 -17.36122 -16.89985 -16.61975 -16.48184 -16.00813 -15.74905 -15.71281 -15.35220 -15.07323 -14.86472 -14.58072 -14.44557 -14.34122 -14.23758 -13.88410 -13.73785 -13.52570 -13.25577 -13.16929 -13.00679 -12.94399 -12.88468 -12.78634 -12.70924 -12.59972 -12.36266 -12.14086 -12.04802 -11.94779 -11.86805 -11.71219 -11.64968 -11.57850 -11.25535 -10.92966 -10.78973 -10.68019 -9.72270 -9.19199 -8.93026 -7.84479 -5.26285 1.48577 1.48995 1.52347 1.58152 1.88824 2.48941 2.93499 3.11882 3.30217 3.37089 3.58360 3.72955 3.76076 3.80284 3.95776 4.01497 4.07732 4.19016 4.26046 4.28633 4.35602 4.38516 4.40315 4.44848 4.49705 4.54283 4.58498 4.65446 4.68596 4.76204 4.78989 4.82559 4.85609 4.89237 4.92124 4.98244 5.03465 5.06848 5.16639 5.17509 5.27491 5.30273 5.36605 5.42713 5.45833 5.52667 5.70217 6.15437 6.16557 6.23379 6.29689 6.82354 7.04148 7.08605 7.70505 8.33010 9.21325 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010682 B = 0.003665 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.534398 B = 7638.406054 C = 9128.999870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.076 3.924 3 C -0.186 4.186 4 N -0.537 5.537 5 C 0.060 3.940 6 C -0.088 4.088 7 C -0.104 4.104 8 C 0.525 3.475 9 O -0.573 6.573 10 N -0.599 5.599 11 C 0.081 3.919 12 C 0.141 3.859 13 H 0.109 0.891 14 C 0.130 3.870 15 N -0.615 5.615 16 C -0.244 4.244 17 H 0.085 0.915 18 C -0.056 4.056 19 N -0.943 5.943 20 Si 0.974 3.026 21 H -0.289 1.289 22 H -0.295 1.295 23 H -0.267 1.267 24 C 0.151 3.849 25 C 0.083 3.917 26 H 0.071 0.929 27 O -0.566 6.566 28 C -0.102 4.102 29 C 0.058 3.942 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.037 0.963 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.052 0.948 46 H 0.043 0.957 47 H 0.248 0.752 48 H 0.004 0.996 49 H 0.049 0.951 50 H 0.393 0.607 51 H 0.070 0.930 52 H 0.067 0.933 53 H 0.034 0.966 54 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.253 -8.304 -14.186 16.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 C -0.244 4.244 4 N -0.262 5.262 5 C -0.068 4.068 6 C -0.126 4.126 7 C -0.125 4.125 8 C 0.314 3.686 9 O -0.452 6.452 10 N -0.330 5.330 11 C -0.061 4.061 12 C 0.036 3.964 13 H 0.127 0.873 14 C 0.003 3.997 15 N -0.343 5.343 16 C -0.373 4.373 17 H 0.102 0.898 18 C -0.250 4.250 19 N -0.591 5.591 20 Si 0.802 3.198 21 H -0.216 1.216 22 H -0.222 1.222 23 H -0.192 1.192 24 C 0.025 3.975 25 C 0.022 3.978 26 H 0.089 0.911 27 O -0.373 6.373 28 C -0.140 4.140 29 C -0.070 4.070 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.057 0.943 48 H 0.022 0.978 49 H 0.067 0.933 50 H 0.243 0.757 51 H 0.089 0.911 52 H 0.085 0.915 53 H 0.052 0.948 54 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.738 -9.572 -14.520 17.407 hybrid contribution 0.456 2.072 1.487 2.591 sum 1.194 -7.499 -13.034 15.085 Atomic orbital electron populations 1.21867 0.93774 1.02335 1.02131 1.21770 0.96246 0.92395 0.92813 1.22465 1.01351 0.98067 1.02550 1.62214 1.10761 1.51197 1.02027 1.22076 0.87468 0.98552 0.98691 1.21334 1.00453 0.99327 0.91506 1.21381 0.98381 0.99430 0.93297 1.20941 0.75863 0.87551 0.84218 1.90629 1.50904 1.18414 1.85292 1.47805 1.63955 1.13025 1.08193 1.21710 1.00147 0.95487 0.88710 1.22317 0.93981 0.80132 1.00000 0.87316 1.21920 0.97629 0.86977 0.93124 1.44515 1.16183 1.10262 1.63326 1.19411 1.01775 0.91372 1.24733 0.89768 1.25580 1.00523 0.96891 1.02024 1.70112 1.35678 1.08051 1.45295 0.85133 0.78699 0.77562 0.78385 1.21633 1.22207 1.19172 1.21793 0.85461 0.94753 0.95464 1.23259 0.93245 0.93843 0.87467 0.91087 1.86380 1.51537 1.66950 1.32434 1.21565 0.92500 1.01487 0.98493 1.22056 1.01162 0.94843 0.88913 0.93022 0.90941 0.92129 0.89063 0.92755 0.90893 0.93309 0.94482 0.89060 0.91372 0.91402 0.88950 0.91850 0.90875 0.90229 0.92958 0.93917 0.94262 0.97782 0.93286 0.75710 0.91107 0.91453 0.94781 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.99 71.98 0.65 -1.59 16 2 C 0.08 1.28 2.96 44.92 0.13 1.42 16 3 C -0.19 -3.15 8.50 71.98 0.61 -2.54 16 4 N -0.54 -11.21 4.64 -871.10 -4.04 -15.25 16 5 C 0.06 1.23 5.03 86.33 0.43 1.66 16 6 C -0.09 -2.17 4.87 30.65 0.15 -2.02 16 7 C -0.10 -2.84 1.72 -11.46 -0.02 -2.86 16 8 C 0.52 16.62 6.87 87.66 0.60 17.23 16 9 O -0.57 -20.85 15.62 -3.04 -0.05 -20.90 16 10 N -0.60 -18.20 2.91 -814.84 -2.37 -20.57 16 11 C 0.08 2.17 8.87 127.77 1.13 3.30 16 12 C 0.14 4.69 2.46 46.38 0.11 4.80 16 13 H 0.11 3.75 4.45 -2.39 -0.01 3.74 16 14 C 0.13 4.90 6.74 86.86 0.59 5.48 16 15 N -0.62 -29.33 3.40 -691.25 -2.35 -31.68 16 16 C -0.24 -12.88 10.25 84.03 0.86 -12.02 16 17 H 0.08 4.26 7.85 -2.91 -0.02 4.23 16 18 C -0.06 -3.03 5.43 84.86 0.46 -2.56 16 19 N -0.94 -53.54 10.55 21.65 0.23 -53.32 16 20 Si 0.97 43.66 29.56 68.60 2.03 45.69 16 21 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.30 -13.38 7.11 99.48 0.71 -12.68 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 24 C 0.15 6.84 5.31 86.67 0.46 7.30 16 25 C 0.08 2.86 3.89 31.78 0.12 2.98 16 26 H 0.07 2.27 6.80 -2.38 -0.02 2.25 16 27 O -0.57 -17.86 13.39 -148.98 -1.99 -19.85 16 28 C -0.10 -2.65 5.04 30.65 0.15 -2.50 16 29 C 0.06 1.33 4.63 86.33 0.40 1.73 16 30 H 0.05 0.87 6.30 -2.39 -0.02 0.86 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.38 8.08 -2.39 -0.02 1.36 16 34 H 0.05 0.95 6.65 -2.39 -0.02 0.93 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.05 0.96 6.52 -2.38 -0.02 0.94 16 37 H 0.04 0.78 6.73 -2.39 -0.02 0.76 16 38 H 0.09 1.59 8.08 -2.39 -0.02 1.57 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.07 1.86 7.84 -2.39 -0.02 1.84 16 41 H 0.09 2.70 7.17 -2.39 -0.02 2.69 16 42 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.07 1.94 7.54 -2.38 -0.02 1.92 16 44 H 0.08 1.98 6.56 -2.39 -0.02 1.97 16 45 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 46 H 0.04 1.53 6.70 -2.39 -0.02 1.51 16 47 H 0.25 13.76 8.31 -92.70 -0.77 12.99 16 48 H 0.00 0.20 8.10 -2.39 -0.02 0.18 16 49 H 0.05 2.56 6.65 -2.39 -0.02 2.54 16 50 H 0.39 9.54 9.12 -74.05 -0.68 8.87 16 51 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 52 H 0.07 1.87 6.26 -2.39 -0.01 1.85 16 53 H 0.03 0.84 6.62 -2.39 -0.02 0.83 16 54 H 0.09 1.91 6.03 -2.39 -0.01 1.90 16 Total: -1.00 -64.45 398.27 -1.48 -65.93 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.22 Total: 30.11 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 6.85 Total: 19.83 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -8.54 Total: -120.81 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -2.04 Total: -40.75 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -64.45 -1.48 -65.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047584261.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.291 kcal (2) G-P(sol) polarization free energy of solvation -64.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds