Wall clock time and date at job start Wed Apr 1 2020 00:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47134 * 2 1 4 4 N 1.46901 * 109.47506 * 180.02562 * 3 2 1 5 5 C 1.46849 * 110.99902 * 66.04212 * 4 3 2 6 6 C 1.53033 * 109.52328 * 185.84168 * 5 4 3 7 7 C 1.53120 * 109.27931 * 300.82214 * 6 5 4 8 8 C 1.53122 * 109.16070 * 57.65685 * 7 6 5 9 9 H 1.09000 * 109.50429 * 62.32201 * 8 7 6 10 10 C 1.50699 * 109.50272 * 182.40213 * 8 7 6 11 11 O 1.21282 * 119.99540 * 119.99929 * 10 8 7 12 12 N 1.34767 * 119.99923 * 299.99720 * 10 8 7 13 13 C 1.46501 * 119.99846 * 179.97438 * 12 10 8 14 14 C 1.53005 * 109.47380 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.70444 * 59.96020 * 14 13 12 16 16 C 1.53298 * 109.68281 * 180.49023 * 14 13 12 17 17 O 1.43048 * 109.25311 * 172.02700 * 16 14 13 18 18 C 1.42965 * 114.11469 * 297.46481 * 17 16 14 19 19 C 1.53294 * 109.26352 * 62.54182 * 18 17 16 20 20 N 1.47148 * 109.67988 * 299.42232 * 14 13 12 21 21 C 1.36934 * 120.98751 * 9.71488 * 20 14 13 22 22 H 1.08005 * 119.99871 * 328.79936 * 21 20 14 23 23 C 1.38814 * 120.00224 * 148.79039 * 21 20 14 24 24 N 1.31614 * 120.00115 * 349.17472 * 23 21 20 25 25 Si 1.86797 * 120.00110 * 169.16725 * 23 21 20 26 26 H 1.48497 * 109.46930 * 90.00146 * 25 23 21 27 27 H 1.48496 * 109.47445 * 210.00659 * 25 23 21 28 28 H 1.48503 * 109.47129 * 330.00595 * 25 23 21 29 29 C 1.46845 * 111.00577 * 190.25720 * 4 3 2 30 30 H 1.08993 * 109.47220 * 59.99854 * 1 2 3 31 31 H 1.08998 * 109.47049 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46712 * 299.99817 * 1 2 3 33 33 H 1.09000 * 109.47236 * 240.00145 * 2 1 3 34 34 H 1.09003 * 109.47413 * 119.99593 * 2 1 3 35 35 H 1.08999 * 109.47171 * 60.00464 * 3 2 1 36 36 H 1.09001 * 109.47536 * 300.00187 * 3 2 1 37 37 H 1.09002 * 109.45538 * 65.82652 * 5 4 3 38 38 H 1.08999 * 109.45539 * 305.85590 * 5 4 3 39 39 H 1.09003 * 109.50470 * 180.88716 * 6 5 4 40 40 H 1.08997 * 109.50355 * 60.76519 * 6 5 4 41 41 H 1.08994 * 109.52544 * 297.74983 * 7 6 5 42 42 H 1.09006 * 109.57427 * 177.58906 * 7 6 5 43 43 H 0.97003 * 120.00689 * 0.02562 * 12 10 8 44 44 H 1.09005 * 109.47010 * 60.00118 * 13 12 10 45 45 H 1.08997 * 109.47534 * 300.00341 * 13 12 10 46 46 H 1.09000 * 109.51461 * 291.95535 * 16 14 13 47 47 H 1.09007 * 109.50931 * 52.05764 * 16 14 13 48 48 H 1.09003 * 109.51075 * 302.60023 * 18 17 16 49 49 H 1.08998 * 109.51660 * 182.49665 * 18 17 16 50 50 H 1.09007 * 109.68199 * 67.40042 * 19 18 17 51 51 H 1.08997 * 109.68475 * 187.94966 * 19 18 17 52 52 H 0.96999 * 120.00354 * 179.97438 * 24 23 21 53 53 H 1.09008 * 109.45936 * 54.14199 * 29 4 3 54 54 H 1.09001 * 109.46084 * 294.18209 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0347 0.8861 -1.2538 6 6 5.5576 0.7669 -1.1613 7 6 6.1584 2.1517 -0.9042 8 6 5.5583 2.7293 0.3807 9 1 5.8224 2.0917 1.2243 10 6 6.1001 4.1168 0.6096 11 8 5.3425 5.0625 0.6619 12 7 7.4262 4.3066 0.7562 13 6 7.9529 5.6555 0.9782 14 6 9.4760 5.5931 1.1099 15 1 9.9073 5.1820 0.1972 16 6 10.0312 7.0009 1.3546 17 8 11.4257 6.9114 1.6606 18 6 11.7160 6.1804 2.8545 19 6 11.2470 4.7307 2.6866 20 7 9.8400 4.7449 2.2559 21 6 8.8972 3.9915 2.9029 22 1 7.8755 4.3371 2.9595 23 6 9.2545 2.7834 3.4859 24 7 10.4359 2.2579 3.2399 25 14 8.0589 1.9037 4.6198 26 1 7.2078 0.9833 3.8237 27 1 8.8176 1.1256 5.6318 28 1 7.2005 2.9030 5.3054 29 6 4.0354 2.7915 0.2435 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8899 37 1 3.7715 1.5442 -2.0819 38 1 3.6028 -0.1004 -1.4224 39 1 5.9490 0.3686 -2.0973 40 1 5.8212 0.0981 -0.3420 41 1 5.9280 2.8100 -1.7418 42 1 7.2396 2.0662 -0.7948 43 1 8.0321 3.5503 0.7141 44 1 7.5253 6.0666 1.8928 45 1 7.6874 6.2927 0.1347 46 1 9.8934 7.6073 0.4594 47 1 9.5034 7.4602 2.1905 48 1 11.1949 6.6364 3.6963 49 1 12.7901 6.1966 3.0393 50 1 11.8566 4.2326 1.9326 51 1 11.3348 4.2040 3.6368 52 1 10.6857 1.4140 3.6475 53 1 3.6039 3.1890 1.1622 54 1 3.7722 3.4407 -0.5917 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051076275.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:10 Heat of formation + Delta-G solvation = -82.889001 kcal Electronic energy + Delta-G solvation = -31715.478143 eV Core-core repulsion = 27686.640209 eV Total energy + Delta-G solvation = -4028.837933 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.31914 -40.17296 -39.31597 -36.94622 -35.93007 -35.29184 -33.42503 -32.78878 -32.26057 -31.79055 -29.00445 -27.45318 -26.99594 -25.26896 -24.95902 -23.95843 -23.26618 -22.18089 -21.43373 -21.15444 -20.56094 -18.78072 -17.89533 -17.56845 -17.38172 -16.79669 -16.35854 -16.33777 -16.27834 -16.14003 -15.70581 -15.45320 -15.39042 -15.12201 -14.93309 -14.88348 -14.56144 -14.27614 -14.15294 -13.76717 -13.55029 -13.44083 -13.08797 -12.90035 -12.83411 -12.71432 -12.58268 -12.49161 -12.44734 -12.15795 -12.08064 -12.00318 -11.96623 -11.85412 -11.63472 -11.43061 -11.31237 -11.29691 -10.83406 -10.57029 -10.51583 -9.84491 -9.31591 -8.60881 -7.86656 -5.37216 1.41359 1.47156 1.51950 1.70535 2.26278 2.45967 2.94608 3.04958 3.30144 3.44842 3.63235 3.74757 3.85892 4.00667 4.04168 4.11572 4.17993 4.23879 4.25348 4.33630 4.36613 4.45886 4.47854 4.54670 4.59213 4.60300 4.63867 4.65995 4.66535 4.72286 4.75968 4.78953 4.87773 4.94952 4.96327 5.00513 5.05504 5.11677 5.15807 5.23409 5.29465 5.30765 5.36102 5.42672 5.57858 5.64659 5.70231 6.05723 6.15579 6.29332 6.37818 6.70187 7.11790 7.32696 7.77274 8.33528 9.17722 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014398 B = 0.003221 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.301580 B = 8691.556014 C = 9679.187883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.055 3.945 4 N -0.551 5.551 5 C 0.052 3.948 6 C -0.111 4.111 7 C -0.105 4.105 8 C -0.099 4.099 9 H 0.091 0.909 10 C 0.514 3.486 11 O -0.593 6.593 12 N -0.693 5.693 13 C 0.142 3.858 14 C 0.127 3.873 15 H 0.038 0.962 16 C 0.057 3.943 17 O -0.397 6.397 18 C 0.046 3.954 19 C 0.149 3.851 20 N -0.604 5.604 21 C -0.242 4.242 22 H 0.066 0.934 23 C -0.027 4.027 24 N -0.924 5.924 25 Si 0.939 3.061 26 H -0.278 1.278 27 H -0.294 1.294 28 H -0.285 1.285 29 C 0.091 3.909 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.412 0.588 44 H 0.048 0.952 45 H 0.079 0.921 46 H 0.117 0.883 47 H 0.048 0.952 48 H 0.042 0.958 49 H 0.104 0.896 50 H 0.008 0.992 51 H 0.066 0.934 52 H 0.250 0.750 53 H 0.063 0.937 54 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.010 -2.042 -9.529 14.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.072 4.072 4 N -0.276 5.276 5 C -0.075 4.075 6 C -0.149 4.149 7 C -0.143 4.143 8 C -0.121 4.121 9 H 0.109 0.891 10 C 0.301 3.699 11 O -0.475 6.475 12 N -0.342 5.342 13 C 0.017 3.983 14 C 0.020 3.980 15 H 0.056 0.944 16 C -0.021 4.021 17 O -0.316 6.316 18 C -0.032 4.032 19 C 0.024 3.976 20 N -0.330 5.330 21 C -0.372 4.372 22 H 0.084 0.916 23 C -0.224 4.224 24 N -0.569 5.569 25 Si 0.768 3.232 26 H -0.205 1.205 27 H -0.221 1.221 28 H -0.211 1.211 29 C -0.038 4.038 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.249 0.751 44 H 0.066 0.934 45 H 0.097 0.903 46 H 0.135 0.865 47 H 0.066 0.934 48 H 0.061 0.939 49 H 0.122 0.878 50 H 0.026 0.974 51 H 0.084 0.916 52 H 0.060 0.940 53 H 0.082 0.918 54 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.154 -1.740 -9.161 14.539 hybrid contribution -0.394 -0.507 0.682 0.937 sum -11.548 -2.247 -8.479 14.502 Atomic orbital electron populations 1.21715 0.94537 1.02356 1.01969 1.21508 0.96209 0.95119 1.02531 1.22182 0.85925 0.98324 1.00769 1.61888 1.08376 1.21330 1.35970 1.22233 0.95433 1.00514 0.89302 1.21579 0.94472 0.95767 1.03087 1.21531 1.00327 0.97678 0.94802 1.21242 0.96557 0.92837 1.01432 0.89061 1.20821 0.82231 0.91246 0.75646 1.90606 1.58265 1.44684 1.53938 1.46034 1.07150 1.10828 1.70234 1.21105 0.92558 0.84201 1.00412 1.21543 0.92854 0.92706 0.90855 0.94443 1.23001 0.81893 0.95778 1.01459 1.87826 1.24594 1.74665 1.44516 1.23215 1.00920 0.92723 0.86320 1.21241 0.84342 0.92923 0.99137 1.44268 1.05138 1.51111 1.32495 1.19230 0.91680 0.97844 1.28484 0.91605 1.25538 0.97847 0.96943 1.02035 1.70082 1.21507 1.19175 1.46181 0.85724 0.79125 0.78808 0.79534 1.20482 1.22088 1.21081 1.21571 0.92475 0.89120 1.00620 0.92386 0.91647 0.92807 0.91283 0.92049 0.91422 0.94542 0.94621 0.88802 0.88884 0.91639 0.91431 0.91185 0.75102 0.93382 0.90297 0.86478 0.93367 0.93928 0.87775 0.97429 0.91600 0.94033 0.91846 0.94799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.29 16 2 C -0.12 -1.94 5.87 30.59 0.18 -1.76 16 3 C 0.06 1.14 4.96 86.30 0.43 1.57 16 4 N -0.55 -13.52 4.65 -896.37 -4.17 -17.70 16 5 C 0.05 1.07 5.29 86.32 0.46 1.52 16 6 C -0.11 -2.36 6.09 30.65 0.19 -2.17 16 7 C -0.11 -2.69 5.16 30.68 0.16 -2.53 16 8 C -0.10 -3.09 2.69 -11.49 -0.03 -3.12 16 9 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 10 C 0.51 18.86 7.16 87.66 0.63 19.49 16 11 O -0.59 -24.76 15.98 -3.04 -0.05 -24.81 16 12 N -0.69 -25.59 3.67 -463.06 -1.70 -27.29 16 13 C 0.14 5.09 4.45 86.38 0.38 5.48 16 14 C 0.13 4.76 3.21 44.97 0.14 4.91 16 15 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 16 C 0.06 1.88 6.29 72.08 0.45 2.34 16 17 O -0.40 -14.51 10.75 -148.98 -1.60 -16.12 16 18 C 0.05 1.70 6.98 72.08 0.50 2.20 16 19 C 0.15 6.73 5.38 86.35 0.46 7.20 16 20 N -0.60 -27.40 3.03 -673.71 -2.04 -29.44 16 21 C -0.24 -11.91 7.05 84.03 0.59 -11.32 16 22 H 0.07 3.33 5.81 -2.91 -0.02 3.31 16 23 C -0.03 -1.37 5.06 84.86 0.43 -0.94 16 24 N -0.92 -49.93 11.14 21.65 0.24 -49.69 16 25 Si 0.94 43.00 29.57 68.60 2.03 45.03 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 27 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 28 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 29 C 0.09 2.65 4.03 86.32 0.35 3.00 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 33 H 0.07 1.05 6.44 -2.39 -0.02 1.04 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.47 7.98 -2.39 -0.02 1.45 16 36 H 0.04 0.72 8.12 -2.39 -0.02 0.70 16 37 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.09 1.59 6.22 -2.39 -0.01 1.58 16 39 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.07 1.85 7.64 -2.38 -0.02 1.83 16 43 H 0.41 16.04 6.78 -92.71 -0.63 15.41 16 44 H 0.05 1.91 7.57 -2.38 -0.02 1.90 16 45 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 46 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 47 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 48 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 50 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 51 H 0.07 3.32 6.33 -2.39 -0.02 3.31 16 52 H 0.25 13.35 8.31 -92.71 -0.77 12.58 16 53 H 0.06 2.03 7.99 -2.38 -0.02 2.01 16 54 H 0.03 1.02 8.08 -2.39 -0.02 1.00 16 Total: -1.00 -60.04 407.25 -1.02 -61.06 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: 0.24 Total: 34.39 kcal Atomic # 6 Polarization: 18.52 SS G_CDS: 6.04 Total: 24.56 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -7.67 Total: -124.11 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -1.65 Total: -40.93 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -60.04 -1.02 -61.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051076275.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.826 kcal (2) G-P(sol) polarization free energy of solvation -60.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds