Wall clock time and date at job start Wed Apr 1 2020 00:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.46918 * 2 1 4 4 N 1.46908 * 109.47257 * 180.02562 * 3 2 1 5 5 C 1.46849 * 110.99469 * 314.20542 * 4 3 2 6 6 C 1.53040 * 109.52076 * 174.16259 * 5 4 3 7 7 C 1.53112 * 109.27992 * 59.17868 * 6 5 4 8 8 C 1.53119 * 109.16272 * 302.34962 * 7 6 5 9 9 H 1.09007 * 109.49705 * 297.71200 * 8 7 6 10 10 C 1.50700 * 109.50738 * 177.63792 * 8 7 6 11 11 O 1.21285 * 119.99449 * 240.00164 * 10 8 7 12 12 N 1.34772 * 120.00343 * 59.98963 * 10 8 7 13 13 C 1.46501 * 120.00391 * 180.02562 * 12 10 8 14 14 C 1.52993 * 109.47462 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.67966 * 59.71041 * 14 13 12 16 16 C 1.53299 * 109.68393 * 180.23097 * 14 13 12 17 17 O 1.42968 * 109.21780 * 171.98653 * 16 14 13 18 18 C 1.42965 * 114.20180 * 297.47761 * 17 16 14 19 19 C 1.53296 * 109.22404 * 62.56045 * 18 17 16 20 20 N 1.47151 * 109.68023 * 299.19513 * 14 13 12 21 21 C 1.36933 * 120.98523 * 9.76142 * 20 14 13 22 22 H 1.08000 * 119.99671 * 329.57270 * 21 20 14 23 23 C 1.38813 * 120.00605 * 149.56471 * 21 20 14 24 24 N 1.31611 * 120.00600 * 162.99329 * 23 21 20 25 25 Si 1.86803 * 119.99597 * 343.00002 * 23 21 20 26 26 H 1.48499 * 109.47086 * 88.98375 * 25 23 21 27 27 H 1.48498 * 109.47361 * 208.98460 * 25 23 21 28 28 H 1.48501 * 109.47248 * 328.98137 * 25 23 21 29 29 C 1.46840 * 111.00065 * 189.99972 * 4 3 2 30 30 H 1.09006 * 109.47626 * 299.99867 * 1 2 3 31 31 H 1.08998 * 109.47316 * 60.00349 * 1 2 3 32 32 H 1.09006 * 109.47201 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47393 * 240.00273 * 2 1 3 34 34 H 1.08998 * 109.47316 * 119.99651 * 2 1 3 35 35 H 1.08999 * 109.47373 * 60.00076 * 3 2 1 36 36 H 1.09010 * 109.47201 * 299.99750 * 3 2 1 37 37 H 1.08998 * 109.46350 * 54.14694 * 5 4 3 38 38 H 1.08994 * 109.46483 * 294.17974 * 5 4 3 39 39 H 1.09008 * 109.49924 * 299.23772 * 6 5 4 40 40 H 1.08994 * 109.50281 * 179.12421 * 6 5 4 41 41 H 1.09006 * 109.52290 * 62.24933 * 7 6 5 42 42 H 1.09001 * 109.52678 * 182.43968 * 7 6 5 43 43 H 0.97002 * 120.00147 * 0.02562 * 12 10 8 44 44 H 1.09007 * 109.46800 * 300.00483 * 13 12 10 45 45 H 1.08997 * 109.46910 * 59.99996 * 13 12 10 46 46 H 1.09000 * 109.50749 * 291.94908 * 16 14 13 47 47 H 1.08994 * 109.51085 * 52.09862 * 16 14 13 48 48 H 1.09004 * 109.50712 * 302.64274 * 18 17 16 49 49 H 1.08997 * 109.55664 * 182.51701 * 18 17 16 50 50 H 1.08995 * 109.68119 * 187.97944 * 19 18 17 51 51 H 1.09003 * 109.67822 * 67.42351 * 19 18 17 52 52 H 0.96996 * 120.00263 * 179.97438 * 24 23 21 53 53 H 1.09002 * 109.46554 * 65.81744 * 29 4 3 54 54 H 1.09005 * 109.45952 * 305.85026 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0356 0.4866 0.9818 6 6 5.5584 0.4071 0.8526 7 6 6.1591 1.7952 1.0906 8 6 5.5580 2.7820 0.0860 9 1 5.8209 2.4758 -0.9266 10 6 6.1005 4.1629 0.3508 11 8 5.3435 5.0684 0.6301 12 7 7.4267 4.3914 0.2774 13 6 7.9541 5.7336 0.5354 14 6 9.4768 5.7205 0.3873 15 1 9.7447 5.4102 -0.6227 16 6 10.0344 7.1218 0.6619 17 8 11.4621 7.0599 0.7056 18 6 11.9813 6.2375 1.7534 19 6 11.5233 4.7911 1.5337 20 7 10.0616 4.7879 1.3637 21 6 9.2692 3.9416 2.0925 22 1 8.2623 4.2339 2.3516 23 6 9.7598 2.7080 2.4979 24 7 9.1543 2.0422 3.4582 25 14 11.2799 1.9931 1.6807 26 1 12.4933 2.4578 2.3997 27 1 11.2152 0.5102 1.7260 28 1 11.3397 2.4430 0.2668 29 6 4.0352 2.7926 0.2374 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6765 1.9564 -0.8901 37 1 3.6037 -0.4973 0.7987 38 1 3.7731 0.8169 1.9868 39 1 5.8212 0.0635 -0.1480 40 1 5.9505 -0.2909 1.5923 41 1 5.9294 2.1225 2.1047 42 1 7.2400 1.7522 0.9569 43 1 8.0320 3.6672 0.0538 44 1 7.5258 6.4359 -0.1799 45 1 7.6898 6.0395 1.5476 46 1 9.7228 7.7997 -0.1327 47 1 9.6567 7.4829 1.6185 48 1 11.6106 6.5948 2.7142 49 1 13.0704 6.2799 1.7447 50 1 11.7937 4.1851 2.3984 51 1 11.9978 4.3877 0.6391 52 1 9.4969 1.1800 3.7412 53 1 3.7728 3.1122 1.2459 54 1 3.6031 3.4837 -0.4864 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051076287.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:15 Heat of formation + Delta-G solvation = -75.283447 kcal Electronic energy + Delta-G solvation = -31961.543625 eV Core-core repulsion = 27933.035493 eV Total energy + Delta-G solvation = -4028.508132 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.33242 -40.33070 -39.37948 -37.02723 -35.92826 -35.31239 -33.61508 -32.93744 -32.49597 -31.84438 -29.22447 -27.42415 -26.99173 -25.23605 -25.07738 -23.98441 -23.53927 -22.25914 -21.55375 -20.96293 -20.53384 -18.84408 -17.94608 -17.65912 -17.40113 -16.96008 -16.66599 -16.40941 -16.26368 -16.05919 -15.90852 -15.53845 -15.47061 -15.22110 -15.03379 -14.78231 -14.43459 -14.37164 -14.24343 -13.86249 -13.58054 -13.45564 -13.43448 -13.09653 -12.93780 -12.81090 -12.63557 -12.40665 -12.32398 -12.30096 -12.05860 -12.02826 -11.86932 -11.59088 -11.53192 -11.39759 -11.34177 -11.26579 -11.04293 -10.65859 -10.44672 -9.85032 -9.33326 -8.82260 -8.05527 -5.45098 1.32864 1.46050 1.51925 1.71682 2.28969 2.46190 2.84793 2.99769 3.06004 3.27681 3.67831 3.77811 3.89817 3.94854 4.03028 4.08457 4.14467 4.20113 4.24349 4.27745 4.28071 4.38768 4.40827 4.44806 4.48232 4.56661 4.60618 4.61858 4.70158 4.70702 4.74555 4.78094 4.81683 4.85376 4.91339 4.93775 4.96956 4.99937 5.13312 5.20301 5.21836 5.28508 5.30744 5.40614 5.43238 5.61373 5.90780 6.04514 6.12743 6.19664 6.25377 6.69779 6.89344 7.34862 7.63624 8.04508 9.10797 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016525 B = 0.003248 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.020560 B = 8618.880369 C = 9938.789643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.053 3.947 4 N -0.536 5.536 5 C 0.051 3.949 6 C -0.108 4.108 7 C -0.094 4.094 8 C -0.091 4.091 9 H 0.118 0.882 10 C 0.514 3.486 11 O -0.595 6.595 12 N -0.692 5.692 13 C 0.141 3.859 14 C 0.129 3.871 15 H 0.057 0.943 16 C 0.057 3.943 17 O -0.390 6.390 18 C 0.053 3.947 19 C 0.086 3.914 20 N -0.619 5.619 21 C -0.239 4.239 22 H 0.067 0.933 23 C -0.009 4.009 24 N -0.939 5.939 25 Si 0.929 3.071 26 H -0.284 1.284 27 H -0.316 1.316 28 H -0.263 1.263 29 C 0.090 3.910 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.024 0.976 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.018 0.982 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.060 0.940 43 H 0.410 0.590 44 H 0.084 0.916 45 H 0.041 0.959 46 H 0.124 0.876 47 H 0.047 0.953 48 H 0.047 0.953 49 H 0.115 0.885 50 H 0.063 0.937 51 H 0.037 0.963 52 H 0.258 0.742 53 H 0.015 0.985 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.629 -1.265 -9.289 12.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.074 4.074 4 N -0.261 5.261 5 C -0.076 4.076 6 C -0.145 4.145 7 C -0.132 4.132 8 C -0.112 4.112 9 H 0.136 0.864 10 C 0.301 3.699 11 O -0.478 6.478 12 N -0.342 5.342 13 C 0.016 3.984 14 C 0.023 3.977 15 H 0.074 0.926 16 C -0.021 4.021 17 O -0.309 6.309 18 C -0.025 4.025 19 C -0.039 4.039 20 N -0.346 5.346 21 C -0.368 4.368 22 H 0.085 0.915 23 C -0.205 4.205 24 N -0.584 5.584 25 Si 0.759 3.241 26 H -0.211 1.211 27 H -0.245 1.245 28 H -0.188 1.188 29 C -0.039 4.039 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.100 0.900 37 H 0.121 0.879 38 H 0.036 0.964 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.079 0.921 43 H 0.247 0.753 44 H 0.102 0.898 45 H 0.059 0.941 46 H 0.142 0.858 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.133 0.867 50 H 0.081 0.919 51 H 0.055 0.945 52 H 0.068 0.932 53 H 0.033 0.967 54 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.876 -0.800 -9.599 12.442 hybrid contribution 0.822 -0.716 1.363 1.745 sum -7.054 -1.516 -8.236 10.949 Atomic orbital electron populations 1.21717 0.94475 1.02409 1.01981 1.21659 0.96576 0.95070 1.02768 1.22250 0.85891 0.98467 1.00782 1.62037 1.08227 1.06080 1.49725 1.22267 0.95177 0.97576 0.92616 1.21538 0.94548 0.95497 1.02944 1.21316 1.00016 0.95171 0.96741 1.21222 0.96159 0.91254 1.02598 0.86418 1.20866 0.82294 0.90688 0.76014 1.90600 1.58561 1.47344 1.51262 1.45940 1.06867 1.12607 1.68739 1.21106 0.92512 0.84463 1.00274 1.21612 0.91512 0.91553 0.93001 0.92572 1.23005 0.80813 0.95897 1.02430 1.87835 1.20975 1.68527 1.53530 1.23029 0.99613 0.89804 0.90063 1.22098 0.84858 0.97454 0.99507 1.44561 1.01707 1.43605 1.44747 1.18760 0.97835 0.94568 1.25633 0.91548 1.25673 0.99644 0.96866 0.98365 1.69915 1.43371 1.15704 1.29409 0.86251 0.81502 0.75905 0.80432 1.21088 1.24542 1.18793 1.21605 0.92745 0.90293 0.99258 0.93078 0.92140 0.91549 0.90728 0.91726 0.95767 0.90050 0.87867 0.96372 0.89872 0.91246 0.94915 0.92098 0.75312 0.89827 0.94095 0.85849 0.93459 0.93435 0.86724 0.91851 0.94543 0.93238 0.96683 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.33 16 2 C -0.12 -2.08 5.18 30.59 0.16 -1.92 16 3 C 0.05 1.14 5.27 86.30 0.46 1.60 16 4 N -0.54 -13.78 4.81 -896.34 -4.31 -18.09 16 5 C 0.05 1.31 4.85 86.33 0.42 1.73 16 6 C -0.11 -3.05 6.09 30.64 0.19 -2.86 16 7 C -0.09 -3.34 5.16 30.67 0.16 -3.18 16 8 C -0.09 -2.95 2.69 -11.49 -0.03 -2.98 16 9 H 0.12 3.34 8.14 -2.38 -0.02 3.32 16 10 C 0.51 19.67 7.16 87.66 0.63 20.30 16 11 O -0.60 -26.04 15.99 -3.04 -0.05 -26.08 16 12 N -0.69 -25.77 3.67 -463.07 -1.70 -27.47 16 13 C 0.14 4.99 4.44 86.38 0.38 5.37 16 14 C 0.13 4.45 3.21 44.97 0.14 4.59 16 15 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 16 C 0.06 1.70 6.29 72.08 0.45 2.15 16 17 O -0.39 -12.60 10.74 -148.98 -1.60 -14.20 16 18 C 0.05 1.71 6.99 72.08 0.50 2.21 16 19 C 0.09 3.34 4.38 86.35 0.38 3.72 16 20 N -0.62 -25.92 2.78 -673.73 -1.87 -27.79 16 21 C -0.24 -11.77 7.55 84.03 0.63 -11.13 16 22 H 0.07 3.69 5.98 -2.91 -0.02 3.67 16 23 C -0.01 -0.46 5.28 84.86 0.45 -0.01 16 24 N -0.94 -53.12 13.97 21.65 0.30 -52.82 16 25 Si 0.93 42.30 24.28 68.60 1.67 43.97 16 26 H -0.28 -12.58 6.54 99.48 0.65 -11.93 16 27 H -0.32 -15.01 7.11 99.48 0.71 -14.30 16 28 H -0.26 -11.49 6.66 99.48 0.66 -10.82 16 29 C 0.09 2.76 4.00 86.33 0.35 3.11 16 30 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.11 6.21 -2.39 -0.01 1.10 16 35 H 0.02 0.56 8.08 -2.39 -0.02 0.54 16 36 H 0.08 1.62 8.14 -2.38 -0.02 1.61 16 37 H 0.10 2.14 5.81 -2.39 -0.01 2.13 16 38 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 40 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.06 2.42 7.64 -2.39 -0.02 2.40 16 43 H 0.41 15.56 6.80 -92.71 -0.63 14.93 16 44 H 0.08 2.57 8.14 -2.38 -0.02 2.56 16 45 H 0.04 1.69 7.56 -2.39 -0.02 1.67 16 46 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 47 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 49 H 0.11 3.01 8.14 -2.39 -0.02 3.00 16 50 H 0.06 2.71 4.89 -2.39 -0.01 2.69 16 51 H 0.04 1.41 6.83 -2.39 -0.02 1.40 16 52 H 0.26 14.23 8.31 -92.71 -0.77 13.45 16 53 H 0.01 0.54 8.08 -2.39 -0.02 0.52 16 54 H 0.08 2.40 8.10 -2.38 -0.02 2.38 16 Total: -1.00 -62.31 399.56 -1.44 -63.75 By element: Atomic # 1 Polarization: 37.22 SS G_CDS: 0.14 Total: 37.36 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: 5.98 Total: 21.36 kcal Atomic # 7 Polarization: -118.59 SS G_CDS: -7.58 Total: -126.17 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -1.65 Total: -40.28 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.67 Total: 43.97 kcal Total: -62.31 -1.44 -63.75 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051076287.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.529 kcal (2) G-P(sol) polarization free energy of solvation -62.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds