Wall clock time and date at job start Wed Apr 1 2020 00:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47083 * 2 1 4 4 N 1.46901 * 109.46705 * 119.99551 * 2 1 3 5 5 C 1.46848 * 110.99458 * 294.03390 * 4 2 1 6 6 C 1.53043 * 109.51713 * 174.15030 * 5 4 2 7 7 C 1.53122 * 109.27383 * 59.18580 * 6 5 4 8 8 C 1.53117 * 109.16253 * 302.34541 * 7 6 5 9 9 C 1.46851 * 110.99846 * 169.83231 * 4 2 1 10 10 H 1.09003 * 109.45951 * 65.83789 * 9 4 2 11 11 C 1.50696 * 109.46351 * 305.85745 * 9 4 2 12 12 O 1.21278 * 119.99916 * 329.64410 * 11 9 4 13 13 N 1.34773 * 119.99965 * 149.91982 * 11 9 4 14 14 C 1.46507 * 120.00261 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.47393 * 180.02562 * 14 13 11 16 16 H 1.09005 * 109.67829 * 59.18113 * 15 14 13 17 17 C 1.53290 * 109.67902 * 179.69786 * 15 14 13 18 18 O 1.42968 * 109.22244 * 172.02619 * 17 15 14 19 19 C 1.42964 * 114.16337 * 297.42188 * 18 17 15 20 20 C 1.53297 * 109.22369 * 62.57913 * 19 18 17 21 21 N 1.47151 * 109.68189 * 298.66306 * 15 14 13 22 22 C 1.36939 * 120.98032 * 9.71278 * 21 15 14 23 23 H 1.07993 * 120.00285 * 327.76410 * 22 21 15 24 24 C 1.38814 * 119.99716 * 147.76902 * 22 21 15 25 25 N 1.31618 * 119.99983 * 167.07795 * 24 22 21 26 26 Si 1.86807 * 120.00099 * 347.07514 * 24 22 21 27 27 H 1.48492 * 109.46857 * 87.56198 * 26 24 22 28 28 H 1.48500 * 109.47075 * 207.56272 * 26 24 22 29 29 H 1.48504 * 109.46854 * 327.56050 * 26 24 22 30 30 H 1.08999 * 109.47187 * 300.00258 * 1 2 3 31 31 H 1.08997 * 109.46664 * 60.00182 * 1 2 3 32 32 H 1.09000 * 109.46833 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47227 * 239.99215 * 2 1 3 34 34 H 1.08997 * 109.47222 * 299.99476 * 3 2 1 35 35 H 1.08999 * 109.47320 * 59.99823 * 3 2 1 36 36 H 1.09000 * 109.46580 * 179.97438 * 3 2 1 37 37 H 1.08998 * 109.46076 * 54.14484 * 5 4 2 38 38 H 1.08992 * 109.46491 * 294.16268 * 5 4 2 39 39 H 1.08996 * 109.50192 * 299.24986 * 6 5 4 40 40 H 1.08998 * 109.50536 * 179.13081 * 6 5 4 41 41 H 1.09005 * 109.51845 * 182.44239 * 7 6 5 42 42 H 1.08998 * 109.57302 * 62.28871 * 7 6 5 43 43 H 1.08997 * 109.50346 * 297.71574 * 8 7 6 44 44 H 1.09007 * 109.53581 * 177.61275 * 8 7 6 45 45 H 0.97000 * 120.00543 * 0.02562 * 13 11 9 46 46 H 1.09000 * 109.47005 * 300.00806 * 14 13 11 47 47 H 1.09003 * 109.46694 * 60.00143 * 14 13 11 48 48 H 1.09005 * 109.51619 * 291.95000 * 17 15 14 49 49 H 1.08998 * 109.51447 * 52.05452 * 17 15 14 50 50 H 1.09003 * 109.50609 * 182.50145 * 19 18 17 51 51 H 1.08991 * 109.51306 * 302.60036 * 19 18 17 52 52 H 1.08998 * 109.68214 * 67.42106 * 20 19 18 53 53 H 1.08997 * 109.67897 * 187.93063 * 20 19 18 54 54 H 0.96998 * 120.00043 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.6685 0.0510 2.4163 6 6 2.0635 -0.7677 3.6475 7 6 3.5697 -1.0410 3.6107 8 6 3.9161 -1.7730 2.3112 9 6 3.4673 -0.9252 1.1187 10 1 3.9904 0.0309 1.1356 11 6 3.7885 -1.6508 -0.1624 12 8 2.9774 -2.4098 -0.6491 13 7 4.9792 -1.4605 -0.7643 14 6 5.2917 -2.1663 -2.0095 15 6 6.6947 -1.7761 -2.4787 16 1 7.4237 -2.0339 -1.7103 17 6 7.0296 -2.5179 -3.7777 18 8 8.2575 -2.0109 -4.3061 19 6 8.2132 -0.6279 -4.6653 20 6 7.9389 0.2107 -3.4117 21 7 6.7443 -0.3294 -2.7434 22 6 5.7087 0.4895 -2.3800 23 1 4.6957 0.1155 -2.3889 24 6 5.9611 1.8006 -2.0002 25 7 4.9685 2.6587 -1.8974 26 14 7.7097 2.3471 -1.6349 27 1 8.3617 2.7932 -2.8922 28 1 7.6846 3.4709 -0.6645 29 1 8.4728 1.2115 -1.0574 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.6768 1.9564 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.1300 1.4425 0.0005 37 1 0.5943 0.2351 2.4321 38 1 2.2003 1.0023 2.4268 39 1 1.5219 -1.7135 3.6447 40 1 1.8170 -0.2091 4.5504 41 1 3.8483 -1.6607 4.4632 42 1 4.1133 -0.0972 3.6533 43 1 3.4035 -2.7346 2.2875 44 1 4.9930 -1.9332 2.2590 45 1 5.6297 -0.8568 -0.3727 46 1 5.2526 -3.2419 -1.8372 47 1 4.5638 -1.8942 -2.7739 48 1 7.1341 -3.5833 -3.5721 49 1 6.2296 -2.3636 -4.5017 50 1 9.1693 -0.3335 -5.0983 51 1 7.4186 -0.4661 -5.3936 52 1 8.7935 0.1535 -2.7376 53 1 7.7641 1.2485 -3.6954 54 1 5.1448 3.5748 -1.6317 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051147712.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:33 Heat of formation + Delta-G solvation = -66.372007 kcal Electronic energy + Delta-G solvation = -33189.022506 eV Core-core repulsion = 29160.900803 eV Total energy + Delta-G solvation = -4028.121703 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.55706 -40.40538 -39.14613 -36.97488 -36.08040 -35.26746 -33.60565 -32.84037 -31.91171 -31.15267 -29.23357 -28.07323 -27.30786 -25.36768 -25.17981 -24.73490 -23.58860 -21.61886 -21.53510 -21.28865 -20.08550 -18.78084 -18.00317 -17.67824 -17.44991 -17.04693 -16.74811 -16.35213 -16.11842 -16.02081 -15.60769 -15.45296 -15.32090 -15.16638 -14.80752 -14.64363 -14.56509 -14.42850 -14.11795 -13.83224 -13.73076 -13.47273 -13.38666 -13.10030 -12.86790 -12.84218 -12.67341 -12.36581 -12.33129 -12.31938 -12.05968 -12.03570 -11.94144 -11.59082 -11.55508 -11.50443 -11.34365 -11.15447 -11.04175 -10.59029 -10.42108 -9.83343 -9.20443 -8.80744 -8.06345 -5.49239 1.29788 1.42109 1.48281 1.73440 2.28104 2.42939 2.85014 2.96864 3.05466 3.24658 3.74096 3.85847 3.93543 3.94373 4.06747 4.11907 4.17410 4.21995 4.23104 4.26434 4.33187 4.35258 4.38838 4.40152 4.46344 4.59263 4.61115 4.68367 4.69370 4.72335 4.76518 4.81425 4.86330 4.90269 4.92407 4.95062 4.99745 5.09766 5.17252 5.18547 5.20559 5.24524 5.31180 5.41867 5.50704 5.62479 5.90239 6.05168 6.18574 6.21801 6.23710 6.72914 6.87676 7.40023 7.61183 8.02723 9.08747 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012870 B = 0.004338 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.151518 B = 6452.986090 C = 7111.755713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.076 3.924 3 C -0.161 4.161 4 N -0.510 5.510 5 C 0.046 3.954 6 C -0.111 4.111 7 C -0.115 4.115 8 C -0.100 4.100 9 C 0.075 3.925 10 H 0.046 0.954 11 C 0.517 3.483 12 O -0.575 6.575 13 N -0.696 5.696 14 C 0.144 3.856 15 C 0.130 3.870 16 H 0.056 0.944 17 C 0.057 3.943 18 O -0.390 6.390 19 C 0.053 3.947 20 C 0.083 3.917 21 N -0.619 5.619 22 C -0.235 4.235 23 H 0.064 0.936 24 C -0.015 4.015 25 N -0.936 5.936 26 Si 0.935 3.065 27 H -0.282 1.282 28 H -0.320 1.320 29 H -0.262 1.262 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.043 0.957 35 H 0.065 0.935 36 H 0.038 0.962 37 H 0.090 0.910 38 H 0.030 0.970 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.406 0.594 46 H 0.082 0.918 47 H 0.039 0.961 48 H 0.123 0.877 49 H 0.047 0.953 50 H 0.115 0.885 51 H 0.048 0.952 52 H 0.037 0.963 53 H 0.063 0.937 54 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.547 -7.051 8.073 10.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.033 4.033 3 C -0.220 4.220 4 N -0.235 5.235 5 C -0.081 4.081 6 C -0.149 4.149 7 C -0.153 4.153 8 C -0.138 4.138 9 C -0.037 4.037 10 H 0.064 0.936 11 C 0.304 3.696 12 O -0.455 6.455 13 N -0.346 5.346 14 C 0.020 3.980 15 C 0.024 3.976 16 H 0.074 0.926 17 C -0.021 4.021 18 O -0.308 6.308 19 C -0.025 4.025 20 C -0.041 4.041 21 N -0.346 5.346 22 C -0.364 4.364 23 H 0.081 0.919 24 C -0.212 4.212 25 N -0.581 5.581 26 Si 0.766 3.234 27 H -0.209 1.209 28 H -0.250 1.250 29 H -0.187 1.187 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.108 0.892 38 H 0.048 0.952 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.243 0.757 46 H 0.100 0.900 47 H 0.058 0.942 48 H 0.141 0.859 49 H 0.065 0.935 50 H 0.133 0.867 51 H 0.066 0.934 52 H 0.055 0.945 53 H 0.082 0.918 54 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.224 -8.023 7.753 11.224 hybrid contribution 1.246 2.363 -0.259 2.684 sum 0.022 -5.660 7.494 9.392 Atomic orbital electron populations 1.21698 0.92571 1.02062 1.02137 1.21656 0.97075 0.91804 0.92757 1.22215 1.00872 0.97580 1.01351 1.62066 1.10804 1.48103 1.02559 1.22326 1.01593 0.94951 0.89237 1.21604 0.95852 1.00798 0.96643 1.21576 0.96656 1.00503 0.96523 1.21530 1.01042 0.98639 0.92621 1.21536 0.90647 0.97888 0.93654 0.93621 1.20669 0.81227 0.81771 0.85973 1.90602 1.48549 1.39273 1.67077 1.45976 1.17602 1.46245 1.24794 1.21063 0.95210 0.95846 0.85891 1.21603 0.95017 0.84178 0.96761 0.92629 1.22999 0.86561 0.98822 0.93762 1.87843 1.34841 1.25166 1.82936 1.23027 1.02630 0.81408 0.95449 1.22138 0.89669 0.97877 0.94457 1.44539 1.18365 1.03447 1.68297 1.18677 0.87281 0.92585 1.37879 0.91890 1.25788 0.98915 0.96963 0.99503 1.69892 1.32013 1.04017 1.52172 0.86174 0.83291 0.76877 0.77015 1.20923 1.24958 1.18704 0.91004 0.92354 0.92348 0.93178 0.93775 0.91589 0.94303 0.89159 0.95159 0.91093 0.89236 0.89237 0.92194 0.91171 0.90552 0.75748 0.89991 0.94238 0.85875 0.93458 0.86714 0.93395 0.94477 0.91850 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 9.13 71.98 0.66 -3.06 16 2 C 0.08 2.72 2.56 44.92 0.12 2.83 16 3 C -0.16 -6.12 8.45 71.98 0.61 -5.51 16 4 N -0.51 -16.47 4.20 -850.37 -3.58 -20.04 16 5 C 0.05 1.17 4.54 86.33 0.39 1.56 16 6 C -0.11 -2.23 6.09 30.65 0.19 -2.04 16 7 C -0.12 -2.36 6.00 30.67 0.18 -2.18 16 8 C -0.10 -2.62 5.36 30.65 0.16 -2.46 16 9 C 0.07 2.51 1.90 44.19 0.08 2.59 16 10 H 0.05 1.70 6.88 -2.39 -0.02 1.68 16 11 C 0.52 20.19 5.73 87.66 0.50 20.69 16 12 O -0.57 -25.64 15.39 -3.02 -0.05 -25.68 16 13 N -0.70 -26.43 3.83 -463.06 -1.77 -28.20 16 14 C 0.14 5.18 4.44 86.38 0.38 5.57 16 15 C 0.13 4.52 3.20 44.96 0.14 4.67 16 16 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 17 C 0.06 1.71 6.29 72.08 0.45 2.16 16 18 O -0.39 -12.58 10.74 -148.98 -1.60 -14.18 16 19 C 0.05 1.71 6.99 72.08 0.50 2.21 16 20 C 0.08 3.26 4.35 86.35 0.38 3.63 16 21 N -0.62 -26.06 2.78 -673.72 -1.87 -27.93 16 22 C -0.23 -11.68 7.54 84.03 0.63 -11.04 16 23 H 0.06 3.55 6.08 -2.91 -0.02 3.54 16 24 C -0.02 -0.80 5.34 84.86 0.45 -0.34 16 25 N -0.94 -53.02 13.97 21.65 0.30 -52.71 16 26 Si 0.94 42.93 24.24 68.60 1.66 44.59 16 27 H -0.28 -12.53 6.52 99.48 0.65 -11.89 16 28 H -0.32 -15.39 7.11 99.48 0.71 -14.68 16 29 H -0.26 -11.50 6.48 99.48 0.64 -10.86 16 30 H 0.07 1.75 6.43 -2.39 -0.02 1.74 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.05 2.23 5.79 -2.39 -0.01 2.22 16 34 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.07 2.15 6.46 -2.39 -0.02 2.13 16 36 H 0.04 1.73 6.82 -2.39 -0.02 1.72 16 37 H 0.09 2.05 6.22 -2.39 -0.01 2.04 16 38 H 0.03 0.82 6.58 -2.39 -0.02 0.81 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 45 H 0.41 15.87 7.38 -92.71 -0.68 15.18 16 46 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.04 1.65 7.52 -2.39 -0.02 1.63 16 48 H 0.12 2.87 8.14 -2.38 -0.02 2.85 16 49 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 51 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 52 H 0.04 1.45 6.68 -2.39 -0.02 1.43 16 53 H 0.06 2.71 4.83 -2.39 -0.01 2.70 16 54 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -63.51 391.26 -0.98 -64.49 By element: Atomic # 1 Polarization: 40.30 SS G_CDS: 0.08 Total: 40.38 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 5.84 Total: 19.28 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -6.92 Total: -128.88 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -1.65 Total: -39.86 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.66 Total: 44.59 kcal Total: -63.51 -0.98 -64.49 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051147712.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.885 kcal (2) G-P(sol) polarization free energy of solvation -63.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds