Wall clock time and date at job start Wed Apr 1 2020 00:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47002 * 2 1 4 4 N 1.46892 * 109.47356 * 120.00048 * 2 1 3 5 5 C 1.47844 * 111.00027 * 46.57994 * 4 2 1 6 6 C 1.54905 * 104.80122 * 146.36456 * 5 4 2 7 7 C 1.55141 * 101.64826 * 322.92873 * 6 5 4 8 8 C 1.47450 * 111.00021 * 167.41629 * 4 2 1 9 9 H 1.09001 * 109.88088 * 117.17744 * 8 4 2 10 10 C 1.50701 * 109.88769 * 356.15293 * 8 4 2 11 11 O 1.21282 * 119.99737 * 296.33797 * 10 8 4 12 12 N 1.34775 * 119.99681 * 116.33633 * 10 8 4 13 13 C 1.46497 * 119.99565 * 179.97438 * 12 10 8 14 14 C 1.53007 * 109.47200 * 180.02562 * 13 12 10 15 15 H 1.08999 * 108.56812 * 62.05586 * 14 13 12 16 16 C 1.46921 * 108.62098 * 179.97438 * 14 13 12 17 17 N 1.50111 * 106.77675 * 177.91636 * 16 14 13 18 18 C 1.36935 * 120.63366 * 111.32403 * 17 16 14 19 19 H 1.07997 * 120.00024 * 158.25440 * 18 17 16 20 20 C 1.38812 * 119.99904 * 338.24993 * 18 17 16 21 21 N 1.31614 * 120.00016 * 337.82627 * 20 18 17 22 22 Si 1.86803 * 119.99951 * 157.82867 * 20 18 17 23 23 H 1.48497 * 109.46968 * 59.99710 * 22 20 18 24 24 H 1.48496 * 109.46962 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46913 * 300.00265 * 22 20 18 26 26 C 1.43430 * 118.73052 * 291.34615 * 17 16 14 27 27 C 1.55326 * 116.08414 * 89.46205 * 26 17 16 28 28 C 1.55055 * 108.94792 * 319.17574 * 27 26 17 29 29 O 1.39643 * 110.65637 * 322.44380 * 28 27 26 30 30 H 1.08995 * 109.47279 * 57.48374 * 1 2 3 31 31 H 1.09000 * 109.47067 * 177.48859 * 1 2 3 32 32 H 1.08995 * 109.47097 * 297.48422 * 1 2 3 33 33 H 1.09007 * 109.47122 * 240.00420 * 2 1 3 34 34 H 1.09000 * 109.47362 * 175.26288 * 3 2 1 35 35 H 1.09005 * 109.47360 * 295.26456 * 3 2 1 36 36 H 1.08999 * 109.47250 * 55.26311 * 3 2 1 37 37 H 1.09005 * 110.37221 * 265.19696 * 5 4 2 38 38 H 1.09002 * 110.37432 * 27.53238 * 5 4 2 39 39 H 1.08991 * 110.99375 * 81.01947 * 6 5 4 40 40 H 1.09004 * 110.99356 * 204.83979 * 6 5 4 41 41 H 1.09001 * 110.70817 * 277.26676 * 7 6 5 42 42 H 1.09004 * 110.70731 * 154.04062 * 7 6 5 43 43 H 0.96994 * 120.00132 * 359.97438 * 12 10 8 44 44 H 1.08999 * 109.47489 * 60.00027 * 13 12 10 45 45 H 1.09004 * 109.47233 * 299.99795 * 13 12 10 46 46 H 1.09004 * 109.98571 * 58.60215 * 16 14 13 47 47 H 1.08996 * 109.98750 * 297.23744 * 16 14 13 48 48 H 0.97007 * 119.99733 * 180.02562 * 21 20 18 49 49 H 1.08997 * 108.12621 * 211.11591 * 26 17 16 50 50 H 1.08999 * 108.12343 * 327.80663 * 26 17 16 51 51 H 1.09002 * 109.57009 * 79.17210 * 27 26 17 52 52 H 1.09000 * 109.57109 * 199.54652 * 27 26 17 53 53 H 1.08994 * 109.34204 * 202.05436 * 28 27 26 54 54 H 1.09004 * 109.05275 * 82.64544 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.3019 -1.9686 1.4046 6 6 2.3555 -2.9200 2.0245 7 6 3.6418 -2.5003 1.2653 8 6 3.4625 -0.9773 1.0930 9 1 4.0039 -0.4468 1.8763 10 6 3.9708 -0.5511 -0.2602 11 8 3.5532 -1.0913 -1.2625 12 7 4.8894 0.4304 -0.3564 13 6 5.3839 0.8443 -1.6718 14 6 6.4108 1.9658 -1.5009 15 1 7.2529 1.5806 -0.9260 16 6 6.8942 2.3656 -2.8294 17 7 7.8564 3.4981 -2.6176 18 6 9.1942 3.3312 -2.8574 19 1 9.8201 4.1905 -3.0477 20 6 9.7459 2.0574 -2.8559 21 7 9.1389 1.0781 -2.2198 22 14 11.3501 1.7333 -3.7566 23 1 12.4206 2.5887 -3.1845 24 1 11.7232 0.3041 -3.6043 25 1 11.1811 2.0495 -5.1978 26 6 7.3478 4.7583 -2.1587 27 6 7.2803 4.9475 -0.6185 28 6 6.7845 3.6289 0.0295 29 8 5.8080 3.0259 -0.7660 30 1 -0.3633 0.5524 -0.8665 31 1 -0.3633 -1.0267 -0.0450 32 1 -0.3633 0.4743 0.9116 33 1 1.8934 -0.5138 -0.8901 34 1 3.1267 1.4437 0.0849 35 1 1.7476 1.9313 -0.9294 36 1 1.6090 1.9802 0.8445 37 1 0.4669 -1.8281 2.0910 38 1 0.9487 -2.3628 0.4517 39 1 2.4589 -2.7436 3.0951 40 1 2.1064 -3.9621 1.8243 41 1 3.6952 -2.9943 0.2952 42 1 4.5289 -2.7192 1.8597 43 1 5.2231 0.8627 0.4452 44 1 4.5512 1.2029 -2.2768 45 1 5.8536 -0.0054 -2.1673 46 1 6.0584 2.6971 -3.4458 47 1 7.4029 1.5290 -3.3082 48 1 9.5247 0.1881 -2.2184 49 1 7.9766 5.5479 -2.5701 50 1 6.3425 4.8847 -2.5604 51 1 8.2712 5.1940 -0.2371 52 1 6.5845 5.7518 -0.3796 53 1 6.3649 3.8450 1.0119 54 1 7.6284 2.9480 0.1409 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073599826.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:49 Heat of formation + Delta-G solvation = -47.302426 kcal Electronic energy + Delta-G solvation = -32555.266459 eV Core-core repulsion = 28527.971675 eV Total energy + Delta-G solvation = -4027.294784 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.07106 -40.66469 -38.81450 -36.81420 -36.00420 -35.40604 -33.89994 -33.04278 -31.09503 -30.17770 -29.99594 -27.84896 -27.11154 -27.07776 -24.58078 -23.39923 -22.42134 -22.34007 -21.72939 -21.31466 -20.50615 -18.94679 -18.14155 -17.77846 -17.73229 -16.94980 -16.70510 -16.56068 -16.14386 -16.11078 -15.58517 -15.45512 -15.06983 -14.86072 -14.61627 -14.48869 -14.23383 -14.06710 -13.82490 -13.56925 -13.32650 -13.28125 -13.13494 -13.04347 -12.95650 -12.71553 -12.61671 -12.53279 -12.32050 -12.17217 -12.05952 -11.92272 -11.86853 -11.78699 -11.75314 -11.67440 -11.37786 -11.21927 -11.06583 -10.55478 -10.27755 -10.00826 -9.21365 -8.76000 -7.91217 -5.27585 1.47267 1.48323 1.51651 1.56370 2.17730 2.52047 2.93708 3.09987 3.25722 3.47706 3.52096 3.69487 3.81714 4.11930 4.12362 4.15354 4.19224 4.27069 4.36055 4.36931 4.39179 4.51741 4.54483 4.55071 4.70868 4.74690 4.76886 4.77294 4.79195 4.87120 4.90338 4.91720 4.96415 5.02950 5.06178 5.07496 5.08414 5.17893 5.18320 5.24068 5.31575 5.33537 5.37278 5.38949 5.44203 5.50256 5.67546 5.91117 6.02814 6.33712 6.50235 6.52534 7.09286 7.17662 7.82857 8.34852 9.14948 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016248 B = 0.003198 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.826648 B = 8753.356687 C = 9690.220654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.029 3.971 3 C -0.149 4.149 4 N -0.496 5.496 5 C 0.036 3.964 6 C -0.117 4.117 7 C -0.130 4.130 8 C 0.054 3.946 9 H 0.116 0.884 10 C 0.506 3.494 11 O -0.578 6.578 12 N -0.701 5.701 13 C 0.136 3.864 14 C 0.084 3.916 15 H 0.081 0.919 16 C 0.144 3.856 17 N -0.601 5.601 18 C -0.265 4.265 19 H 0.064 0.936 20 C -0.036 4.036 21 N -0.915 5.915 22 Si 0.956 3.044 23 H -0.280 1.280 24 H -0.294 1.294 25 H -0.287 1.287 26 C 0.154 3.846 27 C -0.165 4.165 28 C 0.068 3.932 29 O -0.364 6.364 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.040 0.960 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.096 0.904 43 H 0.410 0.590 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.022 0.978 47 H 0.079 0.921 48 H 0.251 0.749 49 H 0.031 0.969 50 H 0.034 0.966 51 H 0.054 0.946 52 H 0.078 0.922 53 H 0.088 0.912 54 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.240 -4.032 11.200 18.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.079 4.079 3 C -0.207 4.207 4 N -0.222 5.222 5 C -0.092 4.092 6 C -0.155 4.155 7 C -0.169 4.169 8 C -0.057 4.057 9 H 0.133 0.867 10 C 0.294 3.706 11 O -0.458 6.458 12 N -0.352 5.352 13 C 0.010 3.990 14 C 0.025 3.975 15 H 0.099 0.901 16 C 0.019 3.981 17 N -0.323 5.323 18 C -0.395 4.395 19 H 0.082 0.918 20 C -0.232 4.232 21 N -0.561 5.561 22 Si 0.785 3.215 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.214 1.214 26 C 0.026 3.974 27 C -0.205 4.205 28 C -0.010 4.010 29 O -0.282 6.282 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.058 0.942 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.115 0.885 43 H 0.246 0.754 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.040 0.960 47 H 0.097 0.903 48 H 0.060 0.940 49 H 0.049 0.951 50 H 0.053 0.947 51 H 0.072 0.928 52 H 0.096 0.904 53 H 0.105 0.895 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.744 -4.144 10.869 18.780 hybrid contribution 1.780 -0.381 -1.286 2.229 sum -12.964 -4.525 9.583 16.744 Atomic orbital electron populations 1.21848 0.92982 1.02200 1.02503 1.22495 0.97085 0.95560 0.92799 1.22001 1.02255 0.95053 1.01395 1.64268 1.00293 1.21502 1.36157 1.23229 0.97945 0.88050 0.99936 1.22705 0.92412 0.99667 1.00677 1.22784 1.00996 0.91790 1.01336 1.22749 0.91639 0.98532 0.92806 0.86652 1.21393 0.78241 0.78622 0.92375 1.90574 1.58460 1.56650 1.40161 1.46010 1.42164 1.37269 1.09775 1.21321 0.96337 0.96165 0.85137 1.21680 0.93693 0.85716 0.96430 0.90122 1.20694 0.90382 0.92185 0.94851 1.44252 1.03391 1.09322 1.75326 1.19376 0.85461 0.92945 1.41695 0.91813 1.25382 1.00575 0.96927 1.00308 1.70023 1.41755 1.01663 1.42636 0.85523 0.80638 0.76304 0.79012 1.20644 1.22025 1.21359 1.20489 0.96532 0.87541 0.92818 1.23470 1.00251 0.98114 0.98713 1.22373 0.90774 0.94364 0.93442 1.87518 1.33357 1.48780 1.58591 0.92221 0.92077 0.91289 0.92187 0.92032 0.93467 0.91474 0.88192 0.94168 0.88762 0.89218 0.92495 0.88507 0.75403 0.92713 0.92311 0.95980 0.90291 0.93990 0.95097 0.94723 0.92769 0.90385 0.89453 0.94605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.73 71.98 0.63 -2.20 16 2 C 0.03 0.74 2.13 44.92 0.10 0.83 16 3 C -0.15 -3.95 8.97 71.98 0.65 -3.30 16 4 N -0.50 -11.19 5.03 -839.84 -4.22 -15.41 16 5 C 0.04 0.65 5.34 86.77 0.46 1.12 16 6 C -0.12 -1.77 7.08 31.98 0.23 -1.54 16 7 C -0.13 -2.64 6.43 31.77 0.20 -2.44 16 8 C 0.05 1.26 3.58 44.51 0.16 1.42 16 9 H 0.12 2.32 7.94 -2.39 -0.02 2.30 16 10 C 0.51 15.51 3.99 87.66 0.35 15.86 16 11 O -0.58 -21.79 13.85 -3.04 -0.04 -21.84 16 12 N -0.70 -21.66 3.77 -463.05 -1.74 -23.40 16 13 C 0.14 5.00 5.27 86.38 0.45 5.45 16 14 C 0.08 3.36 2.02 28.71 0.06 3.41 16 15 H 0.08 3.68 5.36 -2.39 -0.01 3.67 16 16 C 0.14 6.56 4.72 83.79 0.40 6.96 16 17 N -0.60 -28.78 2.62 -706.01 -1.85 -30.63 16 18 C -0.27 -13.86 9.62 84.03 0.81 -13.05 16 19 H 0.06 3.34 7.89 -2.91 -0.02 3.31 16 20 C -0.04 -1.85 4.87 84.86 0.41 -1.43 16 21 N -0.92 -48.25 9.68 21.65 0.21 -48.04 16 22 Si 0.96 43.08 29.61 68.60 2.03 45.11 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 25 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 26 C 0.15 6.33 5.33 87.75 0.47 6.80 16 27 C -0.16 -5.73 6.74 32.10 0.22 -5.51 16 28 C 0.07 2.36 6.37 72.69 0.46 2.83 16 29 O -0.36 -13.36 9.34 -137.22 -1.28 -14.65 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.15 6.46 -2.39 -0.02 1.13 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 33 H 0.06 1.98 4.76 -3.28 -0.02 1.96 16 34 H 0.06 1.76 4.62 -2.39 -0.01 1.75 16 35 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.04 0.83 6.85 -2.39 -0.02 0.82 16 39 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.06 1.44 7.41 -2.39 -0.02 1.42 16 42 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.41 11.31 8.03 -92.71 -0.74 10.57 16 44 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 46 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 47 H 0.08 4.03 5.92 -2.39 -0.01 4.02 16 48 H 0.25 13.11 8.31 -92.70 -0.77 12.34 16 49 H 0.03 1.26 7.96 -2.39 -0.02 1.24 16 50 H 0.03 1.38 7.98 -2.39 -0.02 1.36 16 51 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 52 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 53 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 54 H 0.04 1.45 6.66 -2.38 -0.02 1.43 16 Total: -1.00 -59.60 396.54 -0.71 -60.31 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: 0.13 Total: 33.35 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 6.05 Total: 15.20 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -7.61 Total: -117.49 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -1.32 Total: -36.48 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -59.60 -0.71 -60.31 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073599826.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.012 kcal (2) G-P(sol) polarization free energy of solvation -59.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds