Wall clock time and date at job start Wed Apr 1 2020 00:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47087 * 2 1 4 4 N 1.46896 * 109.47447 * 180.02562 * 3 2 1 5 5 C 1.47841 * 111.00208 * 74.08988 * 4 3 2 6 6 C 1.54903 * 104.79791 * 146.36319 * 5 4 3 7 7 C 1.55141 * 101.65493 * 322.93468 * 6 5 4 8 8 C 1.47439 * 111.00417 * 194.93851 * 4 3 2 9 9 H 1.08997 * 109.89337 * 117.17118 * 8 4 3 10 10 C 1.50706 * 109.88760 * 356.14682 * 8 4 3 11 11 O 1.21286 * 119.99671 * 309.58880 * 10 8 4 12 12 N 1.34770 * 119.99952 * 129.59022 * 10 8 4 13 13 C 1.46503 * 119.99967 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47298 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.47071 * 305.00046 * 14 13 12 16 16 C 1.54800 * 109.46952 * 184.99898 * 14 13 12 17 17 N 1.45128 * 109.53746 * 172.11045 * 16 14 13 18 18 C 1.36934 * 118.76003 * 269.27319 * 17 16 14 19 19 H 1.07998 * 120.00479 * 138.70892 * 18 17 16 20 20 C 1.38813 * 119.99830 * 318.70888 * 18 17 16 21 21 N 1.31616 * 119.99967 * 159.27806 * 20 18 17 22 22 Si 1.86802 * 120.00002 * 339.27590 * 20 18 17 23 23 H 1.48504 * 109.47166 * 95.20107 * 22 20 18 24 24 H 1.48496 * 109.47264 * 215.20324 * 22 20 18 25 25 H 1.48501 * 109.47055 * 335.20226 * 22 20 18 26 26 C 1.47510 * 122.48359 * 89.29096 * 17 16 14 27 27 C 1.53573 * 110.98494 * 318.40468 * 26 17 16 28 28 C 1.51498 * 109.60235 * 319.94122 * 27 26 17 29 29 O 1.38021 * 109.46752 * 64.99269 * 14 13 12 30 30 H 1.08998 * 109.47029 * 59.99987 * 1 2 3 31 31 H 1.08998 * 109.46866 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47054 * 299.99828 * 1 2 3 33 33 H 1.08997 * 109.47456 * 240.00119 * 2 1 3 34 34 H 1.08999 * 109.47358 * 119.99582 * 2 1 3 35 35 H 1.09009 * 109.47033 * 60.00159 * 3 2 1 36 36 H 1.09004 * 109.47293 * 300.00310 * 3 2 1 37 37 H 1.09000 * 110.37868 * 265.19851 * 5 4 3 38 38 H 1.09009 * 110.37075 * 27.42948 * 5 4 3 39 39 H 1.09007 * 110.98886 * 81.02813 * 6 5 4 40 40 H 1.09005 * 110.99088 * 204.80391 * 6 5 4 41 41 H 1.09002 * 110.70579 * 277.26689 * 7 6 5 42 42 H 1.09006 * 110.70446 * 154.03277 * 7 6 5 43 43 H 0.96996 * 120.00300 * 0.02562 * 12 10 8 44 44 H 1.09000 * 109.46826 * 60.00099 * 13 12 10 45 45 H 1.08999 * 109.47041 * 300.00070 * 13 12 10 46 46 H 1.09002 * 109.46106 * 52.09475 * 16 14 13 47 47 H 1.09001 * 109.46508 * 292.13244 * 16 14 13 48 48 H 0.97001 * 120.00146 * 179.97438 * 21 20 18 49 49 H 1.08999 * 109.16640 * 78.77282 * 26 17 16 50 50 H 1.08999 * 109.16742 * 198.03113 * 26 17 16 51 51 H 1.08998 * 109.45853 * 80.02825 * 27 26 17 52 52 H 1.09004 * 109.44895 * 199.96583 * 27 26 17 53 53 H 1.08999 * 109.60941 * 331.69917 * 28 27 26 54 54 H 1.09004 * 109.73802 * 211.30706 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0383 1.0645 -1.3282 6 6 5.3440 1.8836 -1.4815 7 6 4.9554 3.2229 -0.8017 8 6 4.0375 2.7725 0.3542 9 1 4.6078 2.7098 1.2809 10 6 2.9012 3.7491 0.5168 11 8 2.0568 3.8463 -0.3483 12 7 2.8236 4.5143 1.6235 13 6 1.7193 5.4640 1.7813 14 6 1.8663 6.2000 3.1146 15 1 1.9343 5.4741 3.9248 16 6 0.6348 7.1107 3.3397 17 7 0.6796 7.6649 4.6802 18 6 0.0656 6.9824 5.6961 19 1 0.5447 6.9038 6.6609 20 6 -1.1728 6.3914 5.4861 21 7 -1.5806 5.4198 6.2748 22 14 -2.2605 6.9750 4.0840 23 1 -2.0462 6.1082 2.8974 24 1 -3.6844 6.9028 4.4991 25 1 -1.9155 8.3781 3.7409 26 6 1.3613 8.9359 4.9896 27 6 2.6995 9.0382 4.2431 28 6 3.3926 7.6911 4.2553 29 8 3.0107 6.9712 3.0906 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9564 0.8901 36 1 1.6766 1.9564 -0.8900 37 1 4.2542 -0.0034 -1.3606 38 1 3.3272 1.3310 -2.1102 39 1 6.1698 1.4041 -0.9558 40 1 5.5887 2.0353 -2.5329 41 1 4.4137 3.8648 -1.4964 42 1 5.8399 3.7303 -0.4162 43 1 3.4992 4.4368 2.3151 44 1 0.7719 4.9253 1.7667 45 1 1.7402 6.1846 0.9638 46 1 -0.2767 6.5252 3.2191 47 1 0.6445 7.9213 2.6111 48 1 -2.4461 5.0071 6.1283 49 1 0.7214 9.7668 4.6925 50 1 1.5448 8.9916 6.0626 51 1 2.5181 9.3444 3.2129 52 1 3.3337 9.7761 4.7345 53 1 3.0941 7.1342 5.1435 54 1 4.4733 7.8332 4.2592 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073627271.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:01 Heat of formation + Delta-G solvation = -71.307191 kcal Electronic energy + Delta-G solvation = -31730.226734 eV Core-core repulsion = 27701.891026 eV Total energy + Delta-G solvation = -4028.335708 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.85410 -40.65309 -38.82268 -37.06901 -36.07730 -35.47809 -34.24870 -33.40085 -31.75049 -31.10570 -29.89767 -27.62846 -26.98875 -26.45039 -24.60093 -23.19823 -22.86410 -22.59721 -21.75853 -21.30824 -20.91475 -18.96396 -18.41011 -17.89911 -17.57555 -17.49006 -16.68636 -16.49267 -16.44387 -16.28339 -15.95881 -15.63407 -15.37498 -15.13636 -14.71849 -14.52764 -14.48254 -14.27099 -14.08690 -13.96995 -13.84545 -13.46901 -13.26572 -13.21771 -12.94420 -12.90202 -12.63869 -12.43480 -12.32261 -12.24898 -12.08573 -12.07611 -11.83404 -11.77452 -11.75164 -11.61491 -11.57638 -11.34641 -11.05071 -10.75494 -10.39110 -10.20137 -9.35415 -8.77129 -8.27500 -5.70570 1.23324 1.34013 1.43884 1.44487 2.06336 2.33497 2.67468 2.90429 2.97650 3.25747 3.46725 3.68950 3.75342 3.93904 4.00514 4.01507 4.11426 4.13346 4.18881 4.23139 4.33181 4.39207 4.40391 4.41771 4.49975 4.51571 4.59119 4.63245 4.65954 4.71177 4.72758 4.80842 4.85572 4.91398 4.96307 5.00055 5.01249 5.06088 5.09165 5.16755 5.21103 5.22625 5.27575 5.30976 5.33519 5.36118 5.82756 5.89584 5.92880 6.11281 6.45855 6.66901 6.95187 7.12726 7.55619 7.95009 8.91155 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.003412 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.695525 B = 8204.119602 C = 9871.849737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C 0.050 3.950 4 N -0.509 5.509 5 C 0.035 3.965 6 C -0.116 4.116 7 C -0.125 4.125 8 C 0.054 3.946 9 H 0.121 0.879 10 C 0.498 3.502 11 O -0.579 6.579 12 N -0.707 5.707 13 C 0.140 3.860 14 C 0.093 3.907 15 H 0.040 0.960 16 C 0.113 3.887 17 N -0.614 5.614 18 C -0.265 4.265 19 H 0.046 0.954 20 C -0.007 4.007 21 N -0.941 5.941 22 Si 0.932 3.068 23 H -0.277 1.277 24 H -0.305 1.305 25 H -0.262 1.262 26 C 0.137 3.863 27 C -0.155 4.155 28 C 0.082 3.918 29 O -0.388 6.388 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.042 0.958 36 H 0.044 0.956 37 H 0.098 0.902 38 H 0.038 0.962 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.104 0.896 43 H 0.414 0.586 44 H 0.059 0.941 45 H 0.072 0.928 46 H 0.037 0.963 47 H 0.060 0.940 48 H 0.264 0.736 49 H 0.023 0.977 50 H 0.055 0.945 51 H 0.067 0.933 52 H 0.103 0.897 53 H 0.037 0.963 54 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.673 -5.298 -14.500 22.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.078 4.078 4 N -0.234 5.234 5 C -0.092 4.092 6 C -0.154 4.154 7 C -0.163 4.163 8 C -0.057 4.057 9 H 0.139 0.861 10 C 0.285 3.715 11 O -0.459 6.459 12 N -0.358 5.358 13 C 0.015 3.985 14 C 0.031 3.969 15 H 0.058 0.942 16 C -0.014 4.014 17 N -0.338 5.338 18 C -0.395 4.395 19 H 0.063 0.937 20 C -0.205 4.205 21 N -0.584 5.584 22 Si 0.760 3.240 23 H -0.204 1.204 24 H -0.233 1.233 25 H -0.186 1.186 26 C 0.013 3.987 27 C -0.194 4.194 28 C 0.007 3.993 29 O -0.307 6.307 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.116 0.884 38 H 0.056 0.944 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.123 0.877 43 H 0.250 0.750 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.055 0.945 47 H 0.078 0.922 48 H 0.073 0.927 49 H 0.041 0.959 50 H 0.074 0.926 51 H 0.086 0.914 52 H 0.121 0.879 53 H 0.056 0.944 54 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 16.201 -5.617 -14.819 22.663 hybrid contribution -1.812 0.842 0.020 1.998 sum 14.389 -4.775 -14.799 21.186 Atomic orbital electron populations 1.21729 0.95694 1.02313 1.01127 1.21463 0.95396 0.95280 1.02781 1.22549 0.87539 0.97492 1.00214 1.64101 1.07880 1.22238 1.29166 1.23266 0.96139 1.01582 0.88259 1.22711 0.97149 0.93523 1.02029 1.22754 0.99095 0.99030 0.95471 1.22786 0.93304 0.86883 1.02736 0.86128 1.21624 0.87480 0.81316 0.81060 1.90679 1.43273 1.68985 1.42978 1.45988 1.28431 1.39370 1.22033 1.21145 0.89856 0.91030 0.96467 1.22062 0.87442 0.92213 0.95150 0.94248 1.21882 0.96397 0.96118 0.87025 1.44139 1.63276 1.22119 1.04280 1.18699 0.98765 1.28246 0.93816 0.93669 1.26054 0.97987 0.97068 0.99394 1.69954 1.21565 1.24321 1.42537 0.86037 0.77940 0.79951 0.80027 1.20446 1.23280 1.18649 1.21442 0.92632 0.85931 0.98673 1.22459 0.96590 0.98910 1.01439 1.22215 0.99206 0.91022 0.86898 1.86107 1.42154 1.63280 1.39206 0.93250 0.90838 0.94154 0.90920 0.91371 0.93987 0.93803 0.88386 0.94376 0.88648 0.89023 0.92493 0.87725 0.74950 0.92225 0.90978 0.94482 0.92182 0.92716 0.95914 0.92649 0.91400 0.87860 0.94421 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.91 71.98 0.71 -2.67 16 2 C -0.11 -2.47 6.04 30.59 0.18 -2.29 16 3 C 0.05 1.36 3.40 86.30 0.29 1.65 16 4 N -0.51 -11.43 5.13 -864.89 -4.43 -15.87 16 5 C 0.03 0.61 6.03 86.77 0.52 1.14 16 6 C -0.12 -1.52 7.08 31.98 0.23 -1.30 16 7 C -0.12 -2.11 6.46 31.78 0.21 -1.90 16 8 C 0.05 1.16 3.84 44.52 0.17 1.33 16 9 H 0.12 2.13 7.96 -2.39 -0.02 2.11 16 10 C 0.50 14.32 4.88 87.66 0.43 14.75 16 11 O -0.58 -20.75 13.77 -3.05 -0.04 -20.80 16 12 N -0.71 -19.98 5.49 -463.05 -2.54 -22.53 16 13 C 0.14 4.71 5.34 86.38 0.46 5.17 16 14 C 0.09 3.38 2.68 31.21 0.08 3.46 16 15 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 16 C 0.11 4.74 3.89 87.25 0.34 5.08 16 17 N -0.61 -27.88 1.75 -698.15 -1.22 -29.10 16 18 C -0.27 -14.57 9.71 84.03 0.82 -13.76 16 19 H 0.05 2.74 8.06 -2.91 -0.02 2.71 16 20 C -0.01 -0.42 5.27 84.86 0.45 0.03 16 21 N -0.94 -57.78 13.97 21.65 0.30 -57.48 16 22 Si 0.93 46.32 25.10 68.60 1.72 48.04 16 23 H -0.28 -13.37 6.71 99.48 0.67 -12.70 16 24 H -0.30 -15.31 7.11 99.48 0.71 -14.60 16 25 H -0.26 -12.59 7.11 99.48 0.71 -11.89 16 26 C 0.14 5.05 6.31 86.38 0.54 5.60 16 27 C -0.16 -4.31 5.78 30.29 0.18 -4.14 16 28 C 0.08 2.35 6.38 71.49 0.46 2.80 16 29 O -0.39 -12.32 9.38 -117.93 -1.11 -13.42 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.07 1.39 7.67 -2.39 -0.02 1.38 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.04 1.35 6.56 -2.38 -0.02 1.34 16 36 H 0.04 1.39 6.03 -2.38 -0.01 1.37 16 37 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.04 0.77 7.54 -2.38 -0.02 0.76 16 39 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.06 1.21 7.75 -2.39 -0.02 1.19 16 42 H 0.10 1.29 8.14 -2.38 -0.02 1.28 16 43 H 0.41 9.92 8.33 -92.71 -0.77 9.15 16 44 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.04 1.74 3.52 -2.39 -0.01 1.74 16 47 H 0.06 2.34 8.11 -2.39 -0.02 2.32 16 48 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 49 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.05 2.06 7.91 -2.39 -0.02 2.04 16 51 H 0.07 1.90 8.01 -2.39 -0.02 1.88 16 52 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 53 H 0.04 1.29 7.40 -2.39 -0.02 1.27 16 54 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 Total: -1.00 -69.15 405.62 -1.20 -70.35 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.06 Total: 25.84 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 6.07 Total: 14.96 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -7.89 Total: -124.97 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -1.15 Total: -34.22 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.72 Total: 48.04 kcal Total: -69.15 -1.20 -70.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073627271.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.960 kcal (2) G-P(sol) polarization free energy of solvation -69.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds